Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34519 * 125.78985 * 2 1 4 4 C 1.41381 * 106.84289 * 179.77177 * 3 2 1 5 5 C 1.34515 * 106.84057 * 0.22811 * 4 3 2 6 6 C 1.50694 * 125.79058 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46889 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47466 * 240.00027 * 6 5 4 9 9 C 1.50700 * 109.47239 * 119.99734 * 6 5 4 10 10 O 1.21277 * 120.00175 * 17.89593 * 9 6 5 11 11 N 1.34778 * 120.00096 * 197.89729 * 9 6 5 12 12 C 1.47021 * 125.64839 * 185.53193 * 11 9 6 13 13 C 1.54327 * 107.27119 * 181.01963 * 12 11 9 14 14 C 1.55150 * 102.94079 * 22.19635 * 13 12 11 15 15 O 1.42905 * 111.00854 * 82.56929 * 14 13 12 16 16 C 1.50699 * 111.00409 * 206.38549 * 14 13 12 17 17 H 1.07997 * 120.00010 * 24.70672 * 16 14 13 18 18 C 1.37880 * 120.00009 * 204.71527 * 16 14 13 19 19 N 1.31515 * 120.00134 * 169.87681 * 18 16 14 20 20 Si 1.86800 * 119.99968 * 349.86619 * 18 16 14 21 21 H 1.48507 * 109.46772 * 89.03039 * 20 18 16 22 22 H 1.48500 * 109.47378 * 209.02800 * 20 18 16 23 23 H 1.48494 * 109.47498 * 329.03123 * 20 18 16 24 24 C 1.47419 * 125.64786 * 5.22402 * 11 9 6 25 25 O 1.34303 * 125.79124 * 180.16166 * 2 1 3 26 26 H 1.09007 * 109.47487 * 90.00012 * 1 2 3 27 27 H 1.08998 * 109.47174 * 209.99964 * 1 2 3 28 28 H 1.09000 * 109.47458 * 330.00134 * 1 2 3 29 29 H 1.08004 * 126.57614 * 0.03440 * 3 2 1 30 30 H 1.08001 * 126.57811 * 180.19182 * 4 3 2 31 31 H 1.08994 * 109.47779 * 185.50141 * 8 6 5 32 32 H 1.09007 * 109.46839 * 305.50122 * 8 6 5 33 33 H 1.08996 * 109.47210 * 65.49732 * 8 6 5 34 34 H 1.08998 * 109.88645 * 300.43796 * 12 11 9 35 35 H 1.09001 * 109.88223 * 61.44960 * 12 11 9 36 36 H 1.09005 * 110.71469 * 140.55826 * 13 12 11 37 37 H 1.08995 * 110.71816 * 263.83162 * 13 12 11 38 38 H 0.96701 * 113.99582 * 55.95393 * 15 14 13 39 39 H 0.97001 * 119.99957 * 179.97438 * 19 18 16 40 40 H 1.09000 * 110.36687 * 274.74657 * 24 11 9 41 41 H 1.09002 * 110.36752 * 37.07048 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0054 5 6 3.5814 -0.7121 0.0032 6 6 4.7705 -1.6377 0.0067 7 1 5.6884 -1.0499 0.0109 8 6 4.7351 -2.5184 -1.2439 9 6 4.7256 -2.5086 1.2358 10 8 3.6895 -2.6325 1.8537 11 7 5.8370 -3.1499 1.6483 12 6 5.9084 -4.1151 2.7550 13 6 7.3796 -4.5653 2.8762 14 6 8.1551 -3.4041 2.1998 15 8 8.3551 -2.3221 3.1117 16 6 9.4691 -3.8856 1.6409 17 1 9.5950 -4.9250 1.3762 18 6 10.5108 -2.9990 1.4676 19 7 11.7119 -3.4455 1.1715 20 14 10.2161 -1.1638 1.6531 21 1 10.4180 -0.7709 3.0709 22 1 11.1705 -0.4196 0.7925 23 1 8.8255 -0.8418 1.2434 24 6 7.1811 -3.0045 1.0604 25 8 2.2924 -1.0894 -0.0031 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9664 2.1205 0.0005 30 1 4.5211 1.2435 0.0097 31 1 5.5386 -3.2531 -1.1938 32 1 3.7755 -3.0325 -1.2992 33 1 4.8658 -1.8969 -2.1297 34 1 5.5885 -3.6401 3.6825 35 1 5.2721 -4.9736 2.5398 36 1 7.6678 -4.6635 3.9228 37 1 7.5419 -5.5008 2.3409 38 1 8.8051 -2.5749 3.9293 39 1 12.4447 -2.8217 1.0492 40 1 7.2965 -3.6733 0.2076 41 1 7.3537 -1.9712 0.7594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = -91.853546 kcal Electronic energy + Delta-G solvation = -24285.439580 eV Core-core repulsion = 20745.155978 eV Total energy + Delta-G solvation = -3540.283602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.60199 -41.24286 -39.26938 -36.28966 -35.39365 -34.43426 -34.09477 -32.35446 -31.50838 -30.13972 -27.46353 -26.96050 -25.50816 -23.54152 -22.75402 -21.66942 -21.28507 -20.20765 -19.42430 -18.36352 -17.75256 -17.14803 -17.02601 -16.80486 -16.40142 -16.19484 -15.49434 -15.13811 -15.05122 -14.62964 -14.31708 -14.17859 -13.97677 -13.85991 -13.73514 -13.72885 -13.62044 -13.34824 -13.13378 -12.92422 -12.65126 -12.47487 -12.43915 -12.35663 -12.08448 -11.97345 -11.30215 -11.02507 -10.80089 -10.60637 -10.33670 -9.66084 -9.24778 -8.32984 -6.45209 0.69311 1.45050 1.50745 1.54437 1.60524 1.72177 1.93789 2.05484 2.45300 2.98328 3.37858 3.43014 3.46435 3.86986 3.94083 3.95908 4.10133 4.13875 4.17208 4.22361 4.48547 4.54373 4.60814 4.65507 4.69721 4.70218 4.81599 4.82697 4.86932 4.95915 5.02443 5.09908 5.14709 5.21598 5.29092 5.31983 5.52609 5.63387 6.09894 6.24011 6.44877 6.62854 6.99373 7.02283 7.34011 8.79515 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.004484 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.056839 B = 6242.855038 C = 6774.156771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.029 4.029 3 C -0.222 4.222 4 C -0.212 4.212 5 C -0.014 4.014 6 C -0.026 4.026 7 H 0.130 0.870 8 C -0.135 4.135 9 C 0.526 3.474 10 O -0.578 6.578 11 N -0.610 5.610 12 C 0.113 3.887 13 C -0.137 4.137 14 C 0.214 3.786 15 O -0.566 6.566 16 C -0.543 4.543 17 H 0.053 0.947 18 C 0.033 3.967 19 N -0.931 5.931 20 Si 0.995 3.005 21 H -0.287 1.287 22 H -0.334 1.334 23 H -0.259 1.259 24 C 0.107 3.893 25 O -0.180 6.180 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.173 0.827 30 H 0.162 0.838 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.385 0.615 39 H 0.267 0.733 40 H 0.092 0.908 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.953 6.249 -3.050 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 C -0.241 4.241 4 C -0.231 4.231 5 C -0.064 4.064 6 C -0.047 4.047 7 H 0.148 0.852 8 C -0.193 4.193 9 C 0.315 3.685 10 O -0.458 6.458 11 N -0.342 5.342 12 C -0.009 4.009 13 C -0.175 4.175 14 C 0.174 3.826 15 O -0.376 6.376 16 C -0.581 4.581 17 H 0.071 0.929 18 C -0.168 4.168 19 N -0.568 5.568 20 Si 0.829 3.171 21 H -0.214 1.214 22 H -0.266 1.266 23 H -0.184 1.184 24 C -0.015 4.015 25 O -0.077 6.077 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.191 0.809 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.798 6.239 -3.242 19.137 hybrid contribution 1.004 0.399 0.598 1.235 sum -16.794 6.639 -2.644 18.251 Atomic orbital electron populations 1.20472 0.82503 1.04926 1.04765 1.23339 0.95805 0.83927 1.04816 1.21853 0.91919 1.00486 1.09862 1.21891 0.99707 0.93281 1.08209 1.21760 0.82863 0.94083 1.07731 1.19932 0.94641 0.95322 0.94850 0.85223 1.21747 1.03183 0.99592 0.94761 1.20502 0.82001 0.80058 0.85941 1.90658 1.31661 1.65221 1.58302 1.48658 1.08645 1.42906 1.33964 1.21942 0.97968 0.91505 0.89502 1.23193 0.92147 0.99551 1.02648 1.20141 0.91954 0.83773 0.86776 1.86057 1.80824 1.37986 1.32728 1.21339 0.95793 0.96274 1.44661 0.92873 1.25771 0.94147 1.03947 0.92918 1.70083 1.01404 1.37145 1.48185 0.84946 0.76564 0.78912 0.76672 1.21397 1.26594 1.18424 1.23011 0.79085 1.02179 0.97214 1.83981 1.16493 1.36077 1.71155 0.88348 0.90874 0.87238 0.80944 0.82082 0.90357 0.92341 0.88725 0.92246 0.91283 0.88885 0.90015 0.76532 0.92405 0.89005 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.42 71.23 0.74 -0.37 16 2 C -0.03 -0.74 7.32 24.83 0.18 -0.56 16 3 C -0.22 -5.42 10.81 22.19 0.24 -5.18 16 4 C -0.21 -5.87 10.78 22.19 0.24 -5.63 16 5 C -0.01 -0.44 5.38 24.83 0.13 -0.31 16 6 C -0.03 -0.80 2.55 -12.29 -0.03 -0.83 16 7 H 0.13 3.60 6.92 -2.39 -0.02 3.59 16 8 C -0.14 -3.37 9.16 71.98 0.66 -2.71 16 9 C 0.53 19.29 7.01 87.66 0.61 19.90 16 10 O -0.58 -24.95 16.07 8.79 0.14 -24.81 16 11 N -0.61 -21.63 3.32 -811.35 -2.70 -24.33 16 12 C 0.11 3.74 6.87 86.73 0.60 4.34 16 13 C -0.14 -4.56 6.11 31.78 0.19 -4.37 16 14 C 0.21 8.51 0.70 -10.07 -0.01 8.50 16 15 O -0.57 -22.24 8.78 -148.98 -1.31 -23.55 16 16 C -0.54 -26.68 8.86 25.60 0.23 -26.45 16 17 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 18 C 0.03 1.73 5.45 84.66 0.46 2.19 16 19 N -0.93 -53.40 13.96 21.45 0.30 -53.10 16 20 Si 1.00 45.08 24.98 68.60 1.71 46.80 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.33 -15.69 7.11 99.48 0.71 -14.98 16 23 H -0.26 -11.08 5.30 99.48 0.53 -10.55 16 24 C 0.11 3.92 5.21 86.93 0.45 4.38 16 25 O -0.18 -5.93 10.09 9.25 0.09 -5.83 16 26 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 31 H 0.08 1.87 7.39 -2.39 -0.02 1.86 16 32 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.09 2.75 8.12 -2.38 -0.02 2.74 16 37 H 0.08 2.70 7.98 -2.39 -0.02 2.69 16 38 H 0.38 12.96 9.06 -74.06 -0.67 12.29 16 39 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.09 3.21 7.67 -2.39 -0.02 3.19 16 41 H 0.07 2.73 5.24 -2.39 -0.01 2.72 16 Total: -1.00 -69.10 335.15 3.14 -65.96 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.19 Total: 25.95 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.70 Total: -7.09 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.40 Total: -77.43 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -1.07 Total: -54.19 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.71 Total: 46.80 kcal Total: -69.10 3.14 -65.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.892 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds