Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34513 * 125.78982 * 2 1 4 4 C 1.41381 * 106.83865 * 179.74768 * 3 2 1 5 5 C 1.34510 * 106.84247 * 0.37474 * 4 3 2 6 6 C 1.50705 * 125.79105 * 179.88621 * 5 4 3 7 7 H 1.09002 * 109.46969 * 359.71378 * 6 5 4 8 8 C 1.52992 * 109.47187 * 239.71629 * 6 5 4 9 9 C 1.50697 * 109.46961 * 119.71596 * 6 5 4 10 10 O 1.21277 * 120.00082 * 94.81491 * 9 6 5 11 11 N 1.34777 * 119.99920 * 274.81265 * 9 6 5 12 12 C 1.47429 * 125.64956 * 354.89378 * 11 9 6 13 13 C 1.54906 * 104.83316 * 204.09069 * 12 11 9 14 14 C 1.55157 * 101.58076 * 322.99053 * 13 12 11 15 15 O 1.42904 * 110.72090 * 277.13902 * 14 13 12 16 16 C 1.50704 * 110.72264 * 154.04430 * 14 13 12 17 17 H 1.07998 * 119.99876 * 241.45431 * 16 14 13 18 18 C 1.37881 * 119.99673 * 61.44965 * 16 14 13 19 19 N 1.31512 * 120.00461 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99486 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47041 * 90.00322 * 20 18 16 22 22 H 1.48504 * 109.47146 * 210.00005 * 20 18 16 23 23 H 1.48499 * 109.47693 * 330.00306 * 20 18 16 24 24 C 1.47026 * 125.64743 * 174.58476 * 11 9 6 25 25 O 1.34302 * 108.42183 * 359.62272 * 5 4 3 26 26 H 1.09003 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47342 * 300.00310 * 1 2 3 28 28 H 1.08997 * 109.47012 * 60.00259 * 1 2 3 29 29 H 1.07995 * 126.58139 * 0.02562 * 3 2 1 30 30 H 1.08004 * 126.57610 * 180.23155 * 4 3 2 31 31 H 1.09006 * 109.47412 * 64.98877 * 8 6 5 32 32 H 1.09000 * 109.47459 * 184.98828 * 8 6 5 33 33 H 1.09006 * 109.47397 * 304.98906 * 8 6 5 34 34 H 1.08994 * 110.36436 * 322.93228 * 12 11 9 35 35 H 1.09004 * 110.36535 * 85.25094 * 12 11 9 36 36 H 1.09002 * 111.00571 * 81.06000 * 13 12 11 37 37 H 1.08995 * 111.00587 * 204.87971 * 13 12 11 38 38 H 0.96708 * 113.99623 * 298.54436 * 15 14 13 39 39 H 0.96998 * 120.00327 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.87940 * 298.39436 * 24 11 9 41 41 H 1.08992 * 109.88524 * 59.55953 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0060 5 6 3.5814 -0.7122 0.0008 6 6 4.7706 -1.6379 0.0018 7 1 5.6885 -1.0502 0.0023 8 6 4.7308 -2.5206 -1.2472 9 6 4.7297 -2.5068 1.2325 10 8 4.2315 -3.6112 1.1788 11 7 5.2469 -2.0565 2.3927 12 6 5.9730 -0.7863 2.5742 13 6 6.8579 -1.0107 3.8257 14 6 5.9254 -1.8741 4.7158 15 8 5.0081 -1.0488 5.4366 16 6 6.7308 -2.7259 5.6629 17 1 6.6642 -3.8026 5.6104 18 6 7.5528 -2.1306 6.5962 19 7 7.6336 -0.8195 6.6603 20 14 8.5516 -3.1865 7.7696 21 1 9.8733 -3.4865 7.1626 22 1 8.7482 -2.4561 9.0476 23 1 7.8276 -4.4563 8.0315 24 6 5.1748 -2.7476 3.6884 25 8 2.2924 -1.0895 0.0005 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.9666 2.1204 0.0004 30 1 4.5212 1.2433 0.0111 31 1 4.8495 -1.8994 -2.1350 32 1 5.5401 -3.2495 -1.2030 33 1 3.7746 -3.0418 -1.2936 34 1 6.5938 -0.5765 1.7033 35 1 5.2718 0.0302 2.7469 36 1 7.7668 -1.5550 3.5691 37 1 7.0957 -0.0641 4.3109 38 1 5.4323 -0.4243 6.0410 39 1 8.2122 -0.4008 7.3166 40 1 4.1336 -2.8645 3.9887 41 1 5.6534 -3.7241 3.6148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = -75.891022 kcal Electronic energy + Delta-G solvation = -24249.675457 eV Core-core repulsion = 20710.084042 eV Total energy + Delta-G solvation = -3539.591415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.59743 -39.58654 -37.39979 -34.37984 -34.02708 -33.12567 -32.23279 -31.07646 -29.70119 -28.38141 -26.51577 -25.46957 -23.58055 -22.10187 -21.76751 -20.38889 -19.64346 -18.71673 -17.35306 -16.97616 -16.34762 -16.11998 -15.26770 -14.98316 -14.90147 -14.42647 -14.22609 -13.60602 -13.42683 -13.17340 -13.09517 -12.99895 -12.75809 -12.37904 -12.29952 -12.06397 -11.95633 -11.69987 -11.51245 -11.42439 -11.34932 -11.23266 -10.88799 -10.64936 -10.50029 -10.13266 -9.85556 -9.52535 -9.34412 -8.69454 -8.25563 -8.20184 -8.03094 -6.30430 -4.37926 1.70450 2.58662 2.78501 3.13756 3.18928 3.26555 3.30962 3.49032 4.25677 4.57589 4.77465 4.83050 4.97976 5.00991 5.03481 5.18810 5.31181 5.33395 5.52024 5.58000 5.66288 5.72903 5.76612 5.86849 5.92172 5.96033 6.01874 6.12579 6.20960 6.23722 6.43619 6.55414 6.67297 6.88587 6.93873 7.21957 7.27246 7.32889 7.71426 8.00497 8.06588 8.55956 8.65047 9.28647 9.37780 10.77160 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024553 B = 0.004103 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.098279 B = 6822.921771 C = 7206.319088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.212 4.212 4 C -0.197 4.197 5 C 0.003 3.997 6 C -0.026 4.026 7 H 0.117 0.883 8 C -0.132 4.132 9 C 0.526 3.474 10 O -0.544 6.544 11 N -0.604 5.604 12 C 0.094 3.906 13 C -0.134 4.134 14 C 0.248 3.752 15 O -0.585 6.585 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.122 3.878 25 O -0.164 6.164 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.382 0.618 39 H 0.268 0.732 40 H 0.060 0.940 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 5.667 -13.412 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.231 4.231 4 C -0.216 4.216 5 C -0.048 4.048 6 C -0.047 4.047 7 H 0.135 0.865 8 C -0.190 4.190 9 C 0.313 3.687 10 O -0.423 6.423 11 N -0.336 5.336 12 C -0.029 4.029 13 C -0.173 4.173 14 C 0.207 3.793 15 O -0.394 6.394 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.001 3.999 25 O -0.061 6.061 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.232 0.768 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.879 4.544 -13.736 16.021 hybrid contribution 1.205 0.236 1.078 1.634 sum -5.674 4.780 -12.658 14.672 Atomic orbital electron populations 1.20292 0.85259 1.04028 1.03370 1.22460 0.94062 0.84240 1.05810 1.21493 0.92586 0.99301 1.09746 1.21541 0.98391 0.93341 1.08375 1.21675 0.82698 0.93604 1.06830 1.19871 0.93720 0.95619 0.95525 0.86523 1.21644 1.04033 0.98984 0.94315 1.19868 0.78591 0.86841 0.83388 1.90664 1.46149 1.20835 1.84607 1.48640 1.54255 1.22191 1.08484 1.22556 0.94842 0.85822 0.99631 1.23302 0.97801 1.02646 0.93517 1.19469 0.84817 0.87156 0.87814 1.86150 1.37972 1.54983 1.60302 1.21514 1.24860 0.93621 1.17312 0.91753 1.24976 0.95930 0.95214 0.96830 1.69692 1.39352 1.08550 1.35950 0.86413 0.80127 0.80416 0.80022 1.20463 1.21002 1.19670 1.22086 1.00785 0.96152 0.80891 1.84007 1.16095 1.34892 1.71077 0.90611 0.89668 0.89826 0.83496 0.83298 0.91689 0.91243 0.91144 0.92194 0.91807 0.91391 0.89272 0.76805 0.92211 0.92194 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.42 36.01 0.38 -0.30 16 2 C -0.02 -0.21 7.32 -35.62 -0.26 -0.47 16 3 C -0.21 -2.70 10.81 -39.70 -0.43 -3.13 16 4 C -0.20 -2.66 10.78 -39.70 -0.43 -3.09 16 5 C 0.00 0.04 5.81 -35.62 -0.21 -0.17 16 6 C -0.03 -0.39 2.68 -92.93 -0.25 -0.64 16 7 H 0.12 1.44 6.64 -51.93 -0.34 1.09 16 8 C -0.13 -1.72 8.62 37.15 0.32 -1.40 16 9 C 0.53 10.24 6.93 -10.99 -0.08 10.16 16 10 O -0.54 -12.28 16.53 5.56 0.09 -12.19 16 11 N -0.60 -12.23 3.33 -170.52 -0.57 -12.80 16 12 C 0.09 1.71 6.61 -2.53 -0.02 1.69 16 13 C -0.13 -2.86 5.47 -24.58 -0.13 -3.00 16 14 C 0.25 5.98 0.84 -89.93 -0.08 5.91 16 15 O -0.59 -14.77 13.06 -35.23 -0.46 -15.23 16 16 C -0.53 -13.99 8.23 -34.44 -0.28 -14.28 16 17 H 0.06 1.70 7.58 -52.49 -0.40 1.30 16 18 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 19 N -0.90 -22.78 10.67 55.43 0.59 -22.19 16 20 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.12 2.82 6.23 -3.06 -0.02 2.81 16 25 O -0.16 -2.71 10.65 5.70 0.06 -2.65 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 34 H 0.06 0.89 6.91 -51.93 -0.36 0.53 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.48 8.04 -51.93 -0.42 1.07 16 37 H 0.09 1.97 7.53 -51.93 -0.39 1.58 16 38 H 0.38 9.56 7.46 45.56 0.34 9.90 16 39 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 40 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 41 H 0.07 1.71 7.67 -51.93 -0.40 1.31 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -30.23 342.34 -7.05 -37.28 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.32 Total: 11.57 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.58 Total: -4.11 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.02 Total: -34.99 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.31 Total: -30.07 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.23 -7.05 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.611 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds