Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34513 * 125.78982 * 2 1 4 4 C 1.41381 * 106.83865 * 179.74768 * 3 2 1 5 5 C 1.34510 * 106.84247 * 0.37474 * 4 3 2 6 6 C 1.50705 * 125.79105 * 179.88621 * 5 4 3 7 7 H 1.09002 * 109.46969 * 359.71378 * 6 5 4 8 8 C 1.52992 * 109.47187 * 239.71629 * 6 5 4 9 9 C 1.50697 * 109.46961 * 119.71596 * 6 5 4 10 10 O 1.21277 * 120.00082 * 94.81491 * 9 6 5 11 11 N 1.34777 * 119.99920 * 274.81265 * 9 6 5 12 12 C 1.47429 * 125.64956 * 354.89378 * 11 9 6 13 13 C 1.54906 * 104.83316 * 204.09069 * 12 11 9 14 14 C 1.55157 * 101.58076 * 322.99053 * 13 12 11 15 15 O 1.42904 * 110.72090 * 277.13902 * 14 13 12 16 16 C 1.50704 * 110.72264 * 154.04430 * 14 13 12 17 17 H 1.07998 * 119.99876 * 241.45431 * 16 14 13 18 18 C 1.37881 * 119.99673 * 61.44965 * 16 14 13 19 19 N 1.31512 * 120.00461 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99486 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47041 * 90.00322 * 20 18 16 22 22 H 1.48504 * 109.47146 * 210.00005 * 20 18 16 23 23 H 1.48499 * 109.47693 * 330.00306 * 20 18 16 24 24 C 1.47026 * 125.64743 * 174.58476 * 11 9 6 25 25 O 1.34302 * 108.42183 * 359.62272 * 5 4 3 26 26 H 1.09003 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47342 * 300.00310 * 1 2 3 28 28 H 1.08997 * 109.47012 * 60.00259 * 1 2 3 29 29 H 1.07995 * 126.58139 * 0.02562 * 3 2 1 30 30 H 1.08004 * 126.57610 * 180.23155 * 4 3 2 31 31 H 1.09006 * 109.47412 * 64.98877 * 8 6 5 32 32 H 1.09000 * 109.47459 * 184.98828 * 8 6 5 33 33 H 1.09006 * 109.47397 * 304.98906 * 8 6 5 34 34 H 1.08994 * 110.36436 * 322.93228 * 12 11 9 35 35 H 1.09004 * 110.36535 * 85.25094 * 12 11 9 36 36 H 1.09002 * 111.00571 * 81.06000 * 13 12 11 37 37 H 1.08995 * 111.00587 * 204.87971 * 13 12 11 38 38 H 0.96708 * 113.99623 * 298.54436 * 15 14 13 39 39 H 0.96998 * 120.00327 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.87940 * 298.39436 * 24 11 9 41 41 H 1.08992 * 109.88524 * 59.55953 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0060 5 6 3.5814 -0.7122 0.0008 6 6 4.7706 -1.6379 0.0018 7 1 5.6885 -1.0502 0.0023 8 6 4.7308 -2.5206 -1.2472 9 6 4.7297 -2.5068 1.2325 10 8 4.2315 -3.6112 1.1788 11 7 5.2469 -2.0565 2.3927 12 6 5.9730 -0.7863 2.5742 13 6 6.8579 -1.0107 3.8257 14 6 5.9254 -1.8741 4.7158 15 8 5.0081 -1.0488 5.4366 16 6 6.7308 -2.7259 5.6629 17 1 6.6642 -3.8026 5.6104 18 6 7.5528 -2.1306 6.5962 19 7 7.6336 -0.8195 6.6603 20 14 8.5516 -3.1865 7.7696 21 1 9.8733 -3.4865 7.1626 22 1 8.7482 -2.4561 9.0476 23 1 7.8276 -4.4563 8.0315 24 6 5.1748 -2.7476 3.6884 25 8 2.2924 -1.0895 0.0005 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.9666 2.1204 0.0004 30 1 4.5212 1.2433 0.0111 31 1 4.8495 -1.8994 -2.1350 32 1 5.5401 -3.2495 -1.2030 33 1 3.7746 -3.0418 -1.2936 34 1 6.5938 -0.5765 1.7033 35 1 5.2718 0.0302 2.7469 36 1 7.7668 -1.5550 3.5691 37 1 7.0957 -0.0641 4.3109 38 1 5.4323 -0.4243 6.0410 39 1 8.2122 -0.4008 7.3166 40 1 4.1336 -2.8645 3.9887 41 1 5.6534 -3.7241 3.6148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = -95.830700 kcal Electronic energy + Delta-G solvation = -24250.540107 eV Core-core repulsion = 20710.084042 eV Total energy + Delta-G solvation = -3540.456065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.63639 -41.17253 -39.13450 -36.16345 -35.24762 -34.22624 -34.11777 -32.00537 -31.40514 -30.11919 -27.60105 -27.12566 -25.00301 -23.57155 -22.79321 -21.70789 -21.24927 -20.13412 -19.20557 -18.47177 -17.65893 -17.25912 -16.93970 -16.64897 -16.41025 -16.05531 -15.65429 -14.97530 -14.80997 -14.55193 -14.04519 -13.97151 -13.93412 -13.72499 -13.69723 -13.46302 -13.32470 -13.17516 -13.10863 -12.91035 -12.67810 -12.58361 -12.50496 -12.37607 -12.28850 -12.00083 -11.32150 -11.05069 -10.78645 -10.63848 -10.16887 -9.69538 -9.23613 -8.25865 -6.40427 0.64970 1.40249 1.40739 1.44142 1.52922 1.67155 1.95170 2.03627 2.39051 2.99380 3.41884 3.56056 3.82127 3.84390 3.95821 4.02887 4.09276 4.18053 4.24477 4.41034 4.52668 4.53800 4.62087 4.70261 4.73657 4.78780 4.83878 4.87461 4.91507 5.04533 5.13487 5.14295 5.23021 5.26709 5.44469 5.51708 5.64762 5.74691 6.06290 6.21147 6.50979 6.63069 7.01306 7.29520 7.38780 8.80228 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024553 B = 0.004103 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.098279 B = 6822.921771 C = 7206.319088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.030 4.030 3 C -0.220 4.220 4 C -0.187 4.187 5 C -0.031 4.031 6 C -0.016 4.016 7 H 0.150 0.850 8 C -0.128 4.128 9 C 0.520 3.480 10 O -0.585 6.585 11 N -0.607 5.607 12 C 0.103 3.897 13 C -0.123 4.123 14 C 0.237 3.763 15 O -0.594 6.594 16 C -0.566 4.566 17 H 0.049 0.951 18 C 0.041 3.959 19 N -0.903 5.903 20 Si 0.958 3.042 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.279 1.279 24 C 0.128 3.872 25 O -0.198 6.198 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.174 0.826 30 H 0.176 0.824 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.380 0.620 39 H 0.273 0.727 40 H 0.036 0.964 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 7.668 -14.646 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.239 4.239 4 C -0.206 4.206 5 C -0.081 4.081 6 C -0.037 4.037 7 H 0.167 0.833 8 C -0.186 4.186 9 C 0.310 3.690 10 O -0.466 6.466 11 N -0.339 5.339 12 C -0.018 4.018 13 C -0.162 4.162 14 C 0.197 3.803 15 O -0.403 6.403 16 C -0.604 4.604 17 H 0.067 0.933 18 C -0.161 4.161 19 N -0.542 5.542 20 Si 0.784 3.216 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.204 1.204 24 C 0.005 3.995 25 O -0.096 6.096 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.192 0.808 30 H 0.193 0.807 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.218 6.574 -14.988 17.508 hybrid contribution 0.917 -0.376 1.487 1.787 sum -5.301 6.198 -13.501 15.773 Atomic orbital electron populations 1.20488 0.82877 1.04356 1.05258 1.23316 0.95689 0.83939 1.05001 1.21901 0.92274 1.00395 1.09290 1.21947 0.99716 0.92740 1.06222 1.21834 0.82457 0.94393 1.09417 1.19935 0.95289 0.95334 0.93095 0.83280 1.21651 1.02807 0.99214 0.94888 1.20865 0.77086 0.86851 0.84240 1.90636 1.47618 1.22960 1.85377 1.48723 1.54828 1.22640 1.07697 1.22590 0.94616 0.84730 0.99890 1.23076 0.97390 1.01369 0.94373 1.19594 0.85169 0.87570 0.87997 1.86136 1.38595 1.55070 1.60517 1.21703 1.26321 0.93317 1.19050 0.93259 1.25547 0.96464 0.96353 0.97738 1.69738 1.39258 1.09134 1.36074 0.85559 0.78874 0.78718 0.78464 1.19737 1.20228 1.20435 1.21803 0.98979 0.96004 0.82735 1.83991 1.17070 1.36652 1.71911 0.91095 0.88389 0.87149 0.80825 0.80687 0.88445 0.91063 0.93487 0.87619 0.91354 0.92099 0.89920 0.77015 0.91796 0.94532 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.42 71.24 0.74 -0.49 16 2 C -0.03 -0.75 7.32 24.83 0.18 -0.57 16 3 C -0.22 -4.99 10.81 22.19 0.24 -4.75 16 4 C -0.19 -4.47 10.78 22.19 0.24 -4.24 16 5 C -0.03 -0.90 5.81 24.83 0.14 -0.76 16 6 C -0.02 -0.44 2.68 -12.29 -0.03 -0.47 16 7 H 0.15 3.07 6.64 -2.39 -0.02 3.05 16 8 C -0.13 -3.14 8.62 71.98 0.62 -2.52 16 9 C 0.52 20.13 6.93 87.66 0.61 20.74 16 10 O -0.59 -27.19 16.53 -3.02 -0.05 -27.24 16 11 N -0.61 -24.43 3.33 -811.78 -2.70 -27.13 16 12 C 0.10 3.53 6.61 86.85 0.57 4.11 16 13 C -0.12 -5.18 5.47 31.99 0.18 -5.00 16 14 C 0.24 11.62 0.84 -10.35 -0.01 11.62 16 15 O -0.59 -30.50 13.06 -148.98 -1.95 -32.44 16 16 C -0.57 -30.22 8.23 25.60 0.21 -30.01 16 17 H 0.05 2.70 7.58 -2.91 -0.02 2.68 16 18 C 0.04 2.08 5.28 84.66 0.45 2.53 16 19 N -0.90 -45.47 10.67 21.45 0.23 -45.24 16 20 Si 0.96 41.24 29.54 68.60 2.03 43.27 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.13 6.10 6.23 86.73 0.54 6.64 16 25 O -0.20 -6.46 10.65 -2.50 -0.03 -6.48 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.36 8.03 -2.38 -0.02 1.34 16 34 H 0.11 2.68 6.91 -2.39 -0.02 2.66 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 2.61 8.04 -2.39 -0.02 2.59 16 37 H 0.08 3.57 7.53 -2.39 -0.02 3.55 16 38 H 0.38 19.27 7.46 -74.05 -0.55 18.71 16 39 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 40 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 41 H 0.06 2.95 7.67 -2.39 -0.02 2.93 16 Total: -1.00 -67.23 342.34 2.70 -64.53 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.49 Total: 33.91 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.68 Total: -3.18 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -2.47 Total: -72.36 kcal Atomic # 8 Polarization: -64.14 SS G_CDS: -2.02 Total: -66.17 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -67.23 2.70 -64.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.305 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds