Wall clock time and date at job start Tue Mar 31 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99987 * 2 1 4 4 C 1.52995 * 109.47229 * 184.78435 * 3 2 1 5 5 N 1.46495 * 109.47540 * 65.59590 * 4 3 2 6 6 C 1.46504 * 120.00525 * 275.45798 * 5 4 3 7 7 C 1.50697 * 109.46748 * 274.82976 * 6 5 4 8 8 H 1.08005 * 120.00105 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00107 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00300 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99887 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47154 * 90.00080 * 11 9 7 13 13 H 1.48498 * 109.47248 * 210.00629 * 11 9 7 14 14 H 1.48502 * 109.46944 * 330.00593 * 11 9 7 15 15 C 1.34785 * 119.99674 * 95.45309 * 5 4 3 16 16 O 1.21774 * 119.99881 * 4.59005 * 15 5 4 17 17 C 1.41552 * 119.99940 * 184.59288 * 15 5 4 18 18 C 1.50698 * 120.00109 * 265.40886 * 17 15 5 19 19 C 1.35635 * 119.99849 * 85.40348 * 17 15 5 20 20 C 1.41604 * 120.00108 * 6.55843 * 19 17 15 21 21 C 1.37946 * 126.10334 * 175.44381 * 20 19 17 22 22 C 1.40312 * 106.52866 * 179.97438 * 21 20 19 23 23 C 1.35155 * 107.20402 * 0.02562 * 22 21 20 24 24 O 1.34013 * 109.03376 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47141 * 305.01371 * 1 2 3 26 26 H 1.09002 * 109.47355 * 65.00862 * 1 2 3 27 27 H 1.08998 * 109.47334 * 185.01475 * 1 2 3 28 28 H 1.09002 * 109.47058 * 64.78151 * 3 2 1 29 29 H 1.09005 * 109.47263 * 304.78456 * 3 2 1 30 30 H 1.09010 * 109.46955 * 305.60341 * 4 3 2 31 31 H 1.08996 * 109.47546 * 185.60340 * 4 3 2 32 32 H 1.08999 * 109.46628 * 34.82711 * 6 5 4 33 33 H 1.09000 * 109.47082 * 154.82799 * 6 5 4 34 34 H 0.97000 * 119.99661 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.46811 * 264.97872 * 18 17 15 36 36 H 1.09001 * 109.46936 * 24.97112 * 18 17 15 37 37 H 1.08992 * 109.47279 * 144.97774 * 18 17 15 38 38 H 1.08003 * 119.99412 * 186.54921 * 19 17 15 39 39 H 1.08007 * 126.73414 * 359.97438 * 21 20 19 40 40 H 1.08002 * 126.39767 * 180.02562 * 22 21 20 41 41 H 1.08002 * 125.48181 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5308 1.1868 -0.1203 5 7 3.8748 0.6229 -1.4279 6 6 3.8773 -0.8292 -1.6219 7 6 5.2091 -1.3906 -1.1949 8 1 5.9769 -0.7315 -0.8172 9 6 5.4477 -2.7454 -1.2873 10 7 6.6101 -3.2353 -0.9151 11 14 4.1200 -3.8852 -1.9412 12 1 4.2581 -4.0122 -3.4142 13 1 4.2629 -5.2232 -1.3133 14 1 2.7833 -3.3259 -1.6158 15 6 4.1888 1.4403 -2.4527 16 8 4.2683 2.6417 -2.2709 17 6 4.4261 0.9020 -3.7402 18 6 5.8332 0.5847 -4.1766 19 6 3.3870 0.6717 -4.5810 20 6 2.0831 1.0965 -4.2281 21 6 0.9572 1.0080 -5.0202 22 6 -0.1011 1.5443 -4.2710 23 6 0.4078 1.9304 -3.0800 24 8 1.7201 1.6600 -3.0570 25 1 -0.3634 0.5897 0.8417 26 1 -0.3634 0.4342 -0.9314 27 1 -0.3634 -1.0237 0.0898 28 1 1.7580 1.8155 0.9297 29 1 1.6224 1.8759 -0.8441 30 1 3.9078 0.5340 0.6672 31 1 3.9815 2.1742 -0.0205 32 1 3.0850 -1.2772 -1.0222 33 1 3.7083 -1.0554 -2.6747 34 1 6.7778 -4.1885 -0.9798 35 1 6.2375 1.4261 -4.7393 36 1 6.4535 0.4028 -3.2990 37 1 5.8262 -0.3043 -4.8072 38 1 3.5542 0.1644 -5.5197 39 1 0.9012 0.6050 -6.0207 40 1 -1.1301 1.6321 -4.5871 41 1 -0.1532 2.3832 -2.2758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847437110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:54 Heat of formation + Delta-G solvation = -40.383009 kcal Electronic energy + Delta-G solvation = -25407.534984 eV Core-core repulsion = 21869.483312 eV Total energy + Delta-G solvation = -3538.051672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.30170 -39.53657 -37.52886 -34.89731 -34.72627 -32.80188 -32.49574 -30.30148 -29.75932 -27.59992 -26.18326 -26.08080 -23.72927 -22.48469 -21.82428 -21.14899 -20.26913 -18.04816 -17.15523 -16.97659 -16.23256 -15.99443 -15.79120 -15.52291 -15.12551 -14.81592 -14.39786 -14.18246 -13.73761 -13.14160 -12.89819 -12.75546 -12.73139 -12.52939 -12.33318 -12.14791 -11.86462 -11.72702 -11.64411 -11.55696 -11.30403 -10.89071 -10.76519 -10.52341 -10.19049 -10.05722 -9.64809 -9.51795 -9.41604 -9.10222 -8.62390 -7.66812 -7.46692 -6.13444 -4.12859 1.05468 2.45513 3.02563 3.15644 3.24381 3.32967 3.38684 3.41792 4.00095 4.14090 4.36358 4.91294 5.08166 5.11012 5.19272 5.26293 5.32700 5.45593 5.58956 5.62525 5.65834 5.72931 5.79408 5.84047 5.85366 5.98685 6.03011 6.04464 6.26342 6.33051 6.42506 6.58261 6.59565 6.63151 6.83928 6.98577 7.34779 7.40558 7.46466 7.58493 8.18416 8.49450 8.84176 8.94179 9.47623 10.99234 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.007619 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.048925 B = 3674.140205 C = 4134.406603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.046 3.954 4 C 0.120 3.880 5 N -0.568 5.568 6 C 0.209 3.791 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.078 3.922 10 N -0.895 5.895 11 Si 0.866 3.134 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.559 3.441 16 O -0.567 6.567 17 C -0.088 4.088 18 C -0.108 4.108 19 C -0.100 4.100 20 C 0.031 3.969 21 C -0.203 4.203 22 C -0.212 4.212 23 C -0.045 4.045 24 O -0.147 6.147 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 7.236 -4.820 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.031 4.031 4 C -0.003 4.003 5 N -0.297 5.297 6 C 0.088 3.912 7 C -0.572 4.572 8 H 0.094 0.906 9 C -0.125 4.125 10 N -0.533 5.533 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.185 1.185 15 C 0.348 3.652 16 O -0.449 6.449 17 C -0.090 4.090 18 C -0.164 4.164 19 C -0.119 4.119 20 C -0.020 4.020 21 C -0.222 4.222 22 C -0.231 4.231 23 C -0.114 4.114 24 O -0.042 6.042 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.911 7.536 -4.430 14.774 hybrid contribution -1.124 -0.724 -0.412 1.399 sum -13.035 6.811 -4.842 15.484 Atomic orbital electron populations 1.22690 0.82436 1.02241 0.99167 1.88047 1.18461 1.27570 1.95181 1.23105 0.95398 0.85001 0.99616 1.21347 0.91885 1.00592 0.86501 1.47771 1.64495 1.08488 1.08920 1.19875 0.98579 0.75453 0.97245 1.21378 0.98588 0.93339 1.43941 0.90551 1.24800 0.95168 0.97812 0.94731 1.69896 1.22392 1.13444 1.47550 0.86982 0.83442 0.80762 0.79560 1.19998 1.21061 1.18496 1.16894 0.76641 0.86396 0.85303 1.90763 1.54401 1.14882 1.84850 1.21175 0.97590 0.95908 0.94368 1.20760 0.91334 1.01361 1.02976 1.20145 0.87245 1.03237 1.01234 1.19982 0.95482 1.01523 0.84981 1.22049 0.91547 1.07243 1.01388 1.21576 1.00349 1.06085 0.95134 1.23940 0.81893 1.05370 1.00245 1.84251 1.24703 1.60471 1.34725 0.94675 0.94645 0.90129 0.93307 0.92818 0.89325 0.88999 0.93337 0.95540 0.92546 0.90780 0.89797 0.90549 0.82910 0.83426 0.83750 0.79113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.57 9.01 -35.23 -0.32 -6.89 16 3 C 0.05 0.76 6.26 37.15 0.23 0.99 16 4 C 0.12 2.29 5.97 -4.05 -0.02 2.27 16 5 N -0.57 -12.22 2.27 -178.50 -0.41 -12.62 16 6 C 0.21 4.93 4.03 -5.19 -0.02 4.91 16 7 C -0.53 -14.40 9.94 -34.44 -0.34 -14.74 16 8 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 9 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 11 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 15 C 0.56 11.97 4.22 -14.99 -0.06 11.91 16 16 O -0.57 -13.17 16.41 -2.96 -0.05 -13.22 16 17 C -0.09 -1.67 3.86 -104.29 -0.40 -2.07 16 18 C -0.11 -1.82 10.01 36.00 0.36 -1.46 16 19 C -0.10 -1.67 9.01 -39.23 -0.35 -2.02 16 20 C 0.03 0.52 6.71 -38.41 -0.26 0.26 16 21 C -0.20 -2.90 10.90 -38.91 -0.42 -3.33 16 22 C -0.21 -2.76 10.87 -39.90 -0.43 -3.19 16 23 C -0.05 -0.63 10.44 29.64 0.31 -0.32 16 24 O -0.15 -2.60 6.38 -3.37 -0.02 -2.62 16 25 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 26 H 0.03 0.43 7.34 -51.93 -0.38 0.05 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.88 5.29 -51.93 -0.27 0.60 16 30 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 31 H 0.09 1.70 7.21 -51.93 -0.37 1.32 16 32 H 0.05 1.19 5.64 -51.93 -0.29 0.90 16 33 H 0.03 0.62 5.63 -51.93 -0.29 0.33 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.63 8.06 -51.93 -0.42 1.21 16 37 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 38 H 0.15 2.02 8.06 -52.48 -0.42 1.59 16 39 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.19 2.00 7.98 -52.49 -0.42 1.58 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -33.04 341.43 -5.79 -38.83 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.84 Total: 4.13 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.40 Total: -3.22 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.37 Total: -38.15 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.39 Total: -22.73 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.04 -5.79 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847437110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.556 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds