Wall clock time and date at job start Tue Mar 31 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99987 * 2 1 4 4 C 1.52995 * 109.47229 * 184.78435 * 3 2 1 5 5 N 1.46495 * 109.47540 * 65.59590 * 4 3 2 6 6 C 1.46504 * 120.00525 * 275.45798 * 5 4 3 7 7 C 1.50697 * 109.46748 * 274.82976 * 6 5 4 8 8 H 1.08005 * 120.00105 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00107 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00300 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99887 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47154 * 90.00080 * 11 9 7 13 13 H 1.48498 * 109.47248 * 210.00629 * 11 9 7 14 14 H 1.48502 * 109.46944 * 330.00593 * 11 9 7 15 15 C 1.34785 * 119.99674 * 95.45309 * 5 4 3 16 16 O 1.21774 * 119.99881 * 4.59005 * 15 5 4 17 17 C 1.41552 * 119.99940 * 184.59288 * 15 5 4 18 18 C 1.50698 * 120.00109 * 265.40886 * 17 15 5 19 19 C 1.35635 * 119.99849 * 85.40348 * 17 15 5 20 20 C 1.41604 * 120.00108 * 6.55843 * 19 17 15 21 21 C 1.37946 * 126.10334 * 175.44381 * 20 19 17 22 22 C 1.40312 * 106.52866 * 179.97438 * 21 20 19 23 23 C 1.35155 * 107.20402 * 0.02562 * 22 21 20 24 24 O 1.34013 * 109.03376 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47141 * 305.01371 * 1 2 3 26 26 H 1.09002 * 109.47355 * 65.00862 * 1 2 3 27 27 H 1.08998 * 109.47334 * 185.01475 * 1 2 3 28 28 H 1.09002 * 109.47058 * 64.78151 * 3 2 1 29 29 H 1.09005 * 109.47263 * 304.78456 * 3 2 1 30 30 H 1.09010 * 109.46955 * 305.60341 * 4 3 2 31 31 H 1.08996 * 109.47546 * 185.60340 * 4 3 2 32 32 H 1.08999 * 109.46628 * 34.82711 * 6 5 4 33 33 H 1.09000 * 109.47082 * 154.82799 * 6 5 4 34 34 H 0.97000 * 119.99661 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.46811 * 264.97872 * 18 17 15 36 36 H 1.09001 * 109.46936 * 24.97112 * 18 17 15 37 37 H 1.08992 * 109.47279 * 144.97774 * 18 17 15 38 38 H 1.08003 * 119.99412 * 186.54921 * 19 17 15 39 39 H 1.08007 * 126.73414 * 359.97438 * 21 20 19 40 40 H 1.08002 * 126.39767 * 180.02562 * 22 21 20 41 41 H 1.08002 * 125.48181 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5308 1.1868 -0.1203 5 7 3.8748 0.6229 -1.4279 6 6 3.8773 -0.8292 -1.6219 7 6 5.2091 -1.3906 -1.1949 8 1 5.9769 -0.7315 -0.8172 9 6 5.4477 -2.7454 -1.2873 10 7 6.6101 -3.2353 -0.9151 11 14 4.1200 -3.8852 -1.9412 12 1 4.2581 -4.0122 -3.4142 13 1 4.2629 -5.2232 -1.3133 14 1 2.7833 -3.3259 -1.6158 15 6 4.1888 1.4403 -2.4527 16 8 4.2683 2.6417 -2.2709 17 6 4.4261 0.9020 -3.7402 18 6 5.8332 0.5847 -4.1766 19 6 3.3870 0.6717 -4.5810 20 6 2.0831 1.0965 -4.2281 21 6 0.9572 1.0080 -5.0202 22 6 -0.1011 1.5443 -4.2710 23 6 0.4078 1.9304 -3.0800 24 8 1.7201 1.6600 -3.0570 25 1 -0.3634 0.5897 0.8417 26 1 -0.3634 0.4342 -0.9314 27 1 -0.3634 -1.0237 0.0898 28 1 1.7580 1.8155 0.9297 29 1 1.6224 1.8759 -0.8441 30 1 3.9078 0.5340 0.6672 31 1 3.9815 2.1742 -0.0205 32 1 3.0850 -1.2772 -1.0222 33 1 3.7083 -1.0554 -2.6747 34 1 6.7778 -4.1885 -0.9798 35 1 6.2375 1.4261 -4.7393 36 1 6.4535 0.4028 -3.2990 37 1 5.8262 -0.3043 -4.8072 38 1 3.5542 0.1644 -5.5197 39 1 0.9012 0.6050 -6.0207 40 1 -1.1301 1.6321 -4.5871 41 1 -0.1532 2.3832 -2.2758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847437110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:54 Heat of formation + Delta-G solvation = -61.501609 kcal Electronic energy + Delta-G solvation = -25408.450756 eV Core-core repulsion = 21869.483312 eV Total energy + Delta-G solvation = -3538.967444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.43001 -41.10075 -38.79963 -36.62139 -36.06397 -34.55388 -33.90389 -31.64529 -31.15315 -29.42607 -27.38548 -27.22157 -25.16759 -24.32310 -23.10412 -22.33447 -21.52964 -19.44060 -19.05065 -18.56119 -17.67037 -17.36622 -16.99505 -16.80865 -16.59666 -16.17414 -15.96600 -15.62092 -15.22951 -14.53155 -14.47156 -14.14322 -13.98793 -13.79688 -13.74225 -13.42470 -13.35189 -13.27452 -13.14762 -12.83009 -12.63621 -12.60507 -12.48454 -12.05678 -11.93618 -11.68565 -11.30634 -10.86736 -10.77067 -10.65234 -10.46716 -9.38978 -8.66572 -8.27989 -6.32767 -0.18145 1.36843 1.38020 1.40388 1.51342 1.58889 1.97917 2.23105 2.35690 2.47338 2.92620 3.07214 3.73868 3.85847 4.06268 4.10761 4.12416 4.28503 4.37536 4.44184 4.51942 4.55278 4.57965 4.64322 4.72758 4.78017 4.78679 4.83054 4.90717 4.96373 5.06811 5.07980 5.17533 5.30489 5.41992 5.49907 5.70373 5.72681 6.18834 6.25469 6.30754 6.64319 6.70599 7.21969 7.34928 8.88329 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.007619 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.048925 B = 3674.140205 C = 4134.406603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.058 3.942 4 C 0.112 3.888 5 N -0.574 5.574 6 C 0.232 3.768 7 C -0.533 4.533 8 H 0.030 0.970 9 C 0.025 3.975 10 N -0.941 5.941 11 Si 0.933 3.067 12 H -0.256 1.256 13 H -0.283 1.283 14 H -0.251 1.251 15 C 0.563 3.437 16 O -0.596 6.596 17 C -0.150 4.150 18 C -0.096 4.096 19 C -0.066 4.066 20 C -0.028 4.028 21 C -0.179 4.179 22 C -0.214 4.214 23 C -0.047 4.047 24 O -0.176 6.176 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.268 0.732 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.188 0.812 39 H 0.176 0.824 40 H 0.178 0.822 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.038 6.899 -6.662 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.019 4.019 4 C -0.011 4.011 5 N -0.302 5.302 6 C 0.110 3.890 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.174 4.174 10 N -0.581 5.581 11 Si 0.756 3.244 12 H -0.180 1.180 13 H -0.209 1.209 14 H -0.175 1.175 15 C 0.354 3.646 16 O -0.481 6.481 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.085 4.085 20 C -0.077 4.077 21 C -0.198 4.198 22 C -0.232 4.232 23 C -0.116 4.116 24 O -0.072 6.072 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.205 0.795 39 H 0.194 0.806 40 H 0.196 0.804 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.589 7.215 -6.274 18.288 hybrid contribution -0.122 -0.514 0.184 0.560 sum -15.711 6.700 -6.090 18.134 Atomic orbital electron populations 1.22896 0.80083 1.03310 1.00710 1.87982 1.21104 1.28065 1.95479 1.22943 0.92856 0.85036 1.01100 1.21478 0.94570 0.99819 0.85280 1.47784 1.64825 1.07722 1.09891 1.19460 0.95859 0.76588 0.97072 1.21481 0.99173 0.93063 1.43413 0.95197 1.25634 0.97422 0.99415 0.94908 1.70043 1.24747 1.14016 1.49260 0.85919 0.80518 0.78182 0.79786 1.18047 1.20869 1.17452 1.17251 0.75376 0.85914 0.86098 1.90709 1.55684 1.16086 1.85572 1.21149 0.98971 1.00837 0.94288 1.20650 0.90135 1.02893 1.01574 1.20637 0.86677 0.99884 1.01287 1.20335 0.96505 1.04774 0.86086 1.22544 0.90715 1.04526 1.01977 1.22021 1.01664 1.05152 0.94385 1.24734 0.81004 1.04233 1.01618 1.84234 1.26382 1.61059 1.35501 0.92316 0.93672 0.89536 0.90391 0.92654 0.90926 0.89275 0.93936 0.94833 0.92327 0.88996 0.93787 0.88868 0.79478 0.80621 0.80414 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.71 9.01 -148.98 -1.34 -15.05 16 3 C 0.06 1.83 6.26 71.98 0.45 2.28 16 4 C 0.11 4.40 5.97 86.38 0.52 4.91 16 5 N -0.57 -25.41 2.27 -836.83 -1.90 -27.31 16 6 C 0.23 11.07 4.03 85.63 0.35 11.41 16 7 C -0.53 -29.93 9.94 25.60 0.25 -29.68 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.02 1.41 5.47 84.65 0.46 1.87 16 10 N -0.94 -57.04 13.96 21.45 0.30 -56.74 16 11 Si 0.93 42.32 27.47 68.60 1.88 44.21 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 15 C 0.56 24.82 4.22 85.06 0.36 25.18 16 16 O -0.60 -28.72 16.41 3.15 0.05 -28.66 16 17 C -0.15 -5.73 3.86 -19.65 -0.08 -5.81 16 18 C -0.10 -3.32 10.01 71.24 0.71 -2.61 16 19 C -0.07 -2.11 9.01 22.50 0.20 -1.90 16 20 C -0.03 -0.88 6.71 23.03 0.15 -0.72 16 21 C -0.18 -4.37 10.90 22.71 0.25 -4.12 16 22 C -0.21 -4.59 10.87 22.06 0.24 -4.35 16 23 C -0.05 -1.17 10.44 67.11 0.70 -0.47 16 24 O -0.18 -5.92 6.38 1.70 0.01 -5.90 16 25 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.04 0.95 7.34 -2.39 -0.02 0.93 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.74 5.29 -2.38 -0.01 1.73 16 30 H 0.07 3.01 8.11 -2.38 -0.02 2.99 16 31 H 0.09 3.47 7.21 -2.39 -0.02 3.46 16 32 H 0.04 2.09 5.64 -2.39 -0.01 2.07 16 33 H 0.03 1.56 5.63 -2.39 -0.01 1.55 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.04 1.82 8.06 -2.39 -0.02 1.80 16 37 H 0.09 2.79 8.11 -2.39 -0.02 2.77 16 38 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.18 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.22 3.77 7.98 -2.91 -0.02 3.75 16 Total: -1.00 -74.91 341.43 5.79 -69.12 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.97 Total: 22.48 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.82 Total: -2.15 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.60 Total: -84.05 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -1.28 Total: -49.62 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.21 kcal Total: -74.91 5.79 -69.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847437110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.622 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds