Wall clock time and date at job start Tue Mar 31 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99628 * 2 1 4 4 C 1.53000 * 109.46869 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47288 * 67.75248 * 4 3 2 6 6 C 1.46499 * 120.00254 * 285.44687 * 5 4 3 7 7 C 1.50705 * 109.47105 * 269.99780 * 6 5 4 8 8 H 1.08002 * 120.00028 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00200 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99858 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00212 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.46929 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47445 * 120.00327 * 11 9 7 14 14 H 1.48507 * 109.47139 * 240.00648 * 11 9 7 15 15 C 1.34775 * 120.00125 * 105.44622 * 5 4 3 16 16 O 1.21777 * 120.00380 * 186.76819 * 15 5 4 17 17 C 1.41550 * 119.99998 * 6.76313 * 15 5 4 18 18 C 1.50699 * 120.00243 * 330.56695 * 17 15 5 19 19 C 1.35624 * 120.00087 * 150.56468 * 17 15 5 20 20 C 1.41610 * 120.00368 * 183.17901 * 19 17 15 21 21 C 1.37946 * 126.10679 * 179.33368 * 20 19 17 22 22 C 1.40321 * 106.52785 * 179.75142 * 21 20 19 23 23 C 1.35151 * 107.20471 * 0.40801 * 22 21 20 24 24 O 1.34014 * 109.03439 * 359.58576 * 23 22 21 25 25 H 1.08998 * 109.47381 * 59.99828 * 1 2 3 26 26 H 1.09002 * 109.46983 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46616 * 299.99761 * 1 2 3 28 28 H 1.08991 * 109.47374 * 60.00550 * 3 2 1 29 29 H 1.09003 * 109.47435 * 300.00280 * 3 2 1 30 30 H 1.08998 * 109.47220 * 307.75631 * 4 3 2 31 31 H 1.08997 * 109.47577 * 187.75157 * 4 3 2 32 32 H 1.09003 * 109.47454 * 29.99386 * 6 5 4 33 33 H 1.08997 * 109.47861 * 150.00051 * 6 5 4 34 34 H 0.96999 * 119.99912 * 179.97438 * 10 9 7 35 35 H 1.08991 * 109.47558 * 216.63009 * 18 17 15 36 36 H 1.09005 * 109.46903 * 336.63700 * 18 17 15 37 37 H 1.08998 * 109.46964 * 96.62642 * 18 17 15 38 38 H 1.08002 * 119.99771 * 3.18085 * 19 17 15 39 39 H 1.07999 * 126.73707 * 359.97438 * 21 20 19 40 40 H 1.08002 * 126.39702 * 180.25925 * 22 21 20 41 41 H 1.07995 * 125.48498 * 179.85016 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9805 0.6251 -1.2793 6 6 3.7928 -0.8005 -1.5600 7 6 5.0019 -1.5682 -1.0910 8 1 5.8277 -1.0463 -0.6304 9 6 5.0540 -2.9368 -1.2500 10 7 4.0486 -3.5722 -1.8114 11 14 6.5523 -3.8884 -0.6681 12 1 7.5366 -2.9477 -0.0750 13 1 6.1405 -4.8831 0.3548 14 1 7.1710 -4.5910 -1.8209 15 6 4.5625 1.4217 -2.1975 16 8 4.8203 0.9867 -3.3053 17 6 4.8740 2.7641 -1.8742 18 6 4.0391 3.5094 -0.8650 19 6 5.9240 3.3796 -2.4726 20 6 6.2771 4.6995 -2.1003 21 6 7.3236 5.4367 -2.6145 22 6 7.2937 6.6797 -1.9640 23 6 6.2610 6.6502 -1.0926 24 8 5.6500 5.4606 -1.1792 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.6887 1.8463 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8483 0.5286 0.8116 31 1 3.9781 2.1710 0.1380 32 1 2.9079 -1.1608 -1.0354 33 1 3.6638 -0.9458 -2.6325 34 1 4.0854 -4.5350 -1.9236 35 1 3.9415 4.5506 -1.1720 36 1 3.0505 3.0542 -0.8042 37 1 4.5214 3.4622 0.1114 38 1 6.4909 2.8631 -3.2331 39 1 8.0256 5.1207 -3.3719 40 1 7.9711 7.5049 -2.1273 41 1 5.9719 7.4571 -0.4357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847437111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:56 Heat of formation + Delta-G solvation = -33.509633 kcal Electronic energy + Delta-G solvation = -23916.165373 eV Core-core repulsion = 20378.411753 eV Total energy + Delta-G solvation = -3537.753620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.46695 -41.33919 -38.83372 -36.71528 -36.33456 -34.71368 -34.02969 -31.81009 -30.55117 -29.03929 -27.97606 -26.87145 -25.63161 -24.20327 -23.10905 -22.65729 -21.24866 -19.67647 -18.64213 -17.98697 -17.71652 -17.51595 -17.07267 -16.96657 -16.64223 -16.31278 -16.14213 -15.67531 -15.18972 -14.76340 -14.63510 -14.25846 -13.90456 -13.68899 -13.56934 -13.48661 -13.27859 -13.06216 -13.00651 -12.87593 -12.73352 -12.56930 -12.19812 -12.03268 -11.73655 -11.63065 -11.28296 -10.68165 -10.65083 -10.57220 -10.47411 -9.44133 -8.74264 -8.17954 -6.32843 -0.45036 1.27190 1.35135 1.37689 1.49726 1.80034 2.08094 2.19494 2.41138 2.55853 2.94751 3.11698 3.70102 3.89007 3.99457 4.09549 4.16335 4.21140 4.26732 4.38637 4.42613 4.53710 4.59128 4.61034 4.63994 4.78062 4.86443 4.88123 5.00542 5.07017 5.09814 5.20509 5.27164 5.35541 5.49921 5.59501 5.64014 5.90774 6.12114 6.18266 6.36573 6.74993 6.81047 7.27816 7.43856 8.89225 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.004777 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.495523 B = 5860.334473 C = 7287.551320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.045 3.955 4 C 0.055 3.945 5 N -0.586 5.586 6 C 0.260 3.740 7 C -0.543 4.543 8 H 0.049 0.951 9 C 0.006 3.994 10 N -0.928 5.928 11 Si 0.969 3.031 12 H -0.267 1.267 13 H -0.269 1.269 14 H -0.280 1.280 15 C 0.533 3.467 16 O -0.607 6.607 17 C -0.178 4.178 18 C -0.122 4.122 19 C -0.014 4.014 20 C -0.024 4.024 21 C -0.172 4.172 22 C -0.229 4.229 23 C -0.018 4.018 24 O -0.164 6.164 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.165 0.835 32 H 0.047 0.953 33 H -0.014 1.014 34 H 0.266 0.734 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 23.515 7.278 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.031 4.031 4 C -0.066 4.066 5 N -0.314 5.314 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.068 0.932 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.793 3.207 12 H -0.191 1.191 13 H -0.194 1.194 14 H -0.206 1.206 15 C 0.325 3.675 16 O -0.491 6.491 17 C -0.181 4.181 18 C -0.177 4.177 19 C -0.034 4.034 20 C -0.072 4.072 21 C -0.192 4.192 22 C -0.247 4.247 23 C -0.087 4.087 24 O -0.060 6.060 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.181 0.819 32 H 0.065 0.935 33 H 0.004 0.996 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.193 0.807 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.531 22.807 6.867 23.824 hybrid contribution 0.560 -1.108 -0.474 1.329 sum 0.029 21.699 6.393 22.621 Atomic orbital electron populations 1.22854 0.80266 1.02969 1.00806 1.88101 1.21042 1.28805 1.95437 1.23177 0.93349 0.84965 1.01644 1.23245 0.93979 1.04033 0.85312 1.48076 1.56916 1.09872 1.16575 1.18866 0.96746 0.76051 0.94461 1.21757 1.03642 0.92921 1.39806 0.93226 1.25870 0.99624 0.98539 0.95210 1.70091 1.32886 1.09223 1.44570 0.85356 0.78847 0.78363 0.78133 1.19141 1.19364 1.20555 1.17589 0.78215 0.87287 0.84365 1.90759 1.56530 1.77969 1.23881 1.21054 1.00538 0.93411 1.03051 1.21531 0.99023 1.00336 0.96770 1.20394 0.96229 0.90054 0.96712 1.19563 0.97725 0.93014 0.96923 1.22659 0.98864 0.94917 1.02734 1.22103 1.02661 0.99310 1.00643 1.25270 0.94247 0.87452 1.01714 1.84320 1.48850 1.24186 1.48688 0.94005 0.90343 0.91575 0.88372 0.93226 0.91589 0.81905 0.93539 0.99610 0.92554 0.88694 0.89842 0.87639 0.84307 0.82158 0.80713 0.73716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -15.49 8.42 -148.98 -1.25 -16.74 16 3 C 0.05 1.33 5.27 71.98 0.38 1.71 16 4 C 0.06 1.89 5.35 86.38 0.46 2.35 16 5 N -0.59 -27.48 2.50 -836.83 -2.09 -29.57 16 6 C 0.26 15.33 5.10 85.63 0.44 15.77 16 7 C -0.54 -33.56 9.39 25.60 0.24 -33.32 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.37 5.46 84.65 0.46 0.83 16 10 N -0.93 -59.26 13.29 21.45 0.28 -58.98 16 11 Si 0.97 47.20 29.54 68.60 2.03 49.23 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 15 C 0.53 24.82 7.21 85.06 0.61 25.43 16 16 O -0.61 -34.43 16.01 -4.60 -0.07 -34.50 16 17 C -0.18 -6.02 5.61 -19.65 -0.11 -6.13 16 18 C -0.12 -2.81 6.60 71.24 0.47 -2.34 16 19 C -0.01 -0.43 9.38 22.50 0.21 -0.22 16 20 C -0.02 -0.58 6.68 23.03 0.15 -0.42 16 21 C -0.17 -3.50 10.90 22.71 0.25 -3.26 16 22 C -0.23 -3.33 10.87 22.07 0.24 -3.09 16 23 C -0.02 -0.23 12.06 67.11 0.81 0.58 16 24 O -0.16 -3.22 7.15 -6.15 -0.04 -3.26 16 25 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.42 7.13 -2.39 -0.02 1.40 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.16 4.22 2.63 -29.99 -0.08 4.14 16 32 H 0.05 2.83 5.87 -2.39 -0.01 2.82 16 33 H -0.01 -0.97 7.34 -2.39 -0.02 -0.99 16 34 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.09 1.90 5.76 -2.39 -0.01 1.89 16 36 H 0.08 1.87 4.07 -2.38 -0.01 1.86 16 37 H 0.11 1.99 6.80 -2.39 -0.02 1.97 16 38 H 0.14 4.67 7.72 -2.91 -0.02 4.65 16 39 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -86.14 337.43 5.68 -80.45 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.97 Total: 13.48 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 5.86 Total: -0.12 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -1.80 Total: -88.55 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -1.37 Total: -54.50 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -86.14 5.68 -80.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847437111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.945 kcal (2) G-P(sol) polarization free energy of solvation -86.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds