Wall clock time and date at job start Tue Mar 31 2020 06:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50693 * 109.47498 * 2 1 4 4 C 1.38371 * 120.26610 * 270.02504 * 3 2 1 5 5 N 1.31884 * 121.19992 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.80453 * 359.76996 * 5 4 3 7 7 O 1.35415 * 119.80637 * 180.26208 * 6 5 4 8 8 C 1.40339 * 120.39008 * 0.49263 * 6 5 4 9 9 C 1.47381 * 120.60319 * 179.77379 * 8 6 5 10 10 O 1.21511 * 120.00277 * 359.71905 * 9 8 6 11 11 O 1.34757 * 120.00080 * 179.72089 * 9 8 6 12 12 C 1.45202 * 116.99959 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47206 * 299.99992 * 13 12 11 15 15 C 1.53000 * 109.47263 * 59.99967 * 13 12 11 16 16 C 1.50701 * 109.47356 * 179.97438 * 13 12 11 17 17 H 1.08004 * 119.99737 * 1.36219 * 16 13 12 18 18 C 1.37877 * 120.00297 * 181.35954 * 16 13 12 19 19 N 1.31514 * 120.00215 * 193.96607 * 18 16 13 20 20 Si 1.86798 * 119.99754 * 13.96240 * 18 16 13 21 21 H 1.48508 * 109.46935 * 84.55825 * 20 18 16 22 22 H 1.48497 * 109.47167 * 204.55524 * 20 18 16 23 23 H 1.48500 * 109.47371 * 324.55609 * 20 18 16 24 24 C 1.38312 * 120.27037 * 89.99973 * 3 2 1 25 25 H 1.09004 * 109.47210 * 59.99973 * 1 2 3 26 26 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47162 * 300.00063 * 1 2 3 28 28 H 1.08999 * 109.47156 * 239.99509 * 2 1 3 29 29 H 1.09004 * 109.47210 * 120.00027 * 2 1 3 30 30 H 1.08001 * 119.40301 * 359.97370 * 4 3 2 31 31 H 0.96693 * 114.00165 * 270.22671 * 7 6 5 32 32 H 1.09005 * 109.47156 * 60.00164 * 12 11 9 33 33 H 1.08992 * 109.47264 * 299.99827 * 12 11 9 34 34 H 1.09005 * 109.47287 * 69.31300 * 14 13 12 35 35 H 1.09000 * 109.47153 * 189.31413 * 14 13 12 36 36 H 1.09008 * 109.47270 * 309.31509 * 14 13 12 37 37 H 1.09005 * 109.46944 * 59.99682 * 15 13 12 38 38 H 1.08998 * 109.47240 * 180.02562 * 15 13 12 39 39 H 1.09003 * 109.46901 * 300.00273 * 15 13 12 40 40 H 0.96994 * 120.00257 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.82607 * 0.04429 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2644 2.0784 -1.1951 5 7 2.7035 3.3218 -1.2166 6 6 2.9376 3.9975 -0.1043 7 8 3.3831 5.2744 -0.1736 8 6 2.7318 3.3976 1.1476 9 6 2.9959 4.1447 2.3902 10 8 3.4006 5.2892 2.3367 11 8 2.7887 3.5586 3.5858 12 6 3.0695 4.3543 4.7675 13 6 2.7764 3.5270 6.0207 14 6 1.3042 3.1106 6.0243 15 6 3.6598 2.2778 6.0254 16 6 3.0684 4.3526 7.2472 17 1 3.4060 5.3732 7.1433 18 6 2.9043 3.8051 8.5020 19 7 2.8885 4.5832 9.5621 20 14 2.7046 1.9580 8.6961 21 1 4.0436 1.3169 8.7369 22 1 1.9786 1.6686 9.9587 23 1 1.9330 1.4200 7.5470 24 6 2.2648 2.0780 1.1945 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0825 1.5642 -2.1273 31 1 4.3465 5.3542 -0.1960 32 1 2.4397 5.2440 4.7644 33 1 4.1181 4.6513 4.7648 34 1 1.1308 2.3816 5.2326 35 1 1.0544 2.6667 6.9879 36 1 0.6783 3.9868 5.8547 37 1 4.7086 2.5745 6.0229 38 1 3.4507 1.6883 6.9180 39 1 3.4490 1.6805 5.1383 40 1 2.7735 4.1980 10.4448 41 1 2.0914 1.5856 2.1400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850950365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:05 Heat of formation + Delta-G solvation = -85.658928 kcal Electronic energy + Delta-G solvation = -23736.527489 eV Core-core repulsion = 20196.512505 eV Total energy + Delta-G solvation = -3540.014984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07932 -39.60985 -37.63313 -36.73810 -35.06178 -34.54641 -32.68750 -31.73345 -29.43003 -26.70179 -26.31156 -25.15482 -24.68796 -24.29286 -22.51139 -20.63413 -19.19829 -18.99032 -17.72347 -17.21079 -16.36046 -16.11010 -15.86358 -15.79578 -15.24994 -15.00553 -14.29389 -13.97845 -13.67796 -13.41128 -13.35940 -13.17927 -12.90087 -12.49757 -12.31311 -12.13880 -12.02907 -11.95764 -11.70622 -11.69443 -11.35501 -10.59591 -10.39187 -10.32020 -10.27676 -10.14946 -10.10438 -9.79239 -9.68499 -9.15067 -9.08089 -8.69609 -8.50460 -6.19199 -4.17800 0.27706 0.81560 2.60149 2.89056 3.23545 3.27022 3.31464 3.37476 3.55359 4.24825 4.33072 4.37328 4.49980 4.60645 4.93980 4.96202 5.00934 5.12371 5.24963 5.33539 5.48417 5.59760 5.64652 5.73149 5.85980 5.88259 5.91824 6.07663 6.12974 6.22188 6.47257 6.53526 6.64077 6.72011 6.79991 6.95747 7.17256 7.28633 7.39700 7.54709 7.66059 8.04758 8.38187 8.83368 9.43934 10.93547 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.004232 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.260097 B = 6615.116650 C = 7735.276196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.160 4.160 4 C 0.153 3.847 5 N -0.507 5.507 6 C 0.366 3.634 7 O -0.460 6.460 8 C -0.183 4.183 9 C 0.503 3.497 10 O -0.492 6.492 11 O -0.351 6.351 12 C 0.095 3.905 13 C 0.043 3.957 14 C -0.140 4.140 15 C -0.146 4.146 16 C -0.520 4.520 17 H 0.076 0.924 18 C 0.079 3.921 19 N -0.889 5.889 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.304 1.304 23 H -0.247 1.247 24 C -0.003 4.003 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.165 0.835 31 H 0.406 0.594 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -10.534 -20.328 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.162 4.162 4 C -0.005 4.005 5 N -0.225 5.225 6 C 0.187 3.813 7 O -0.268 6.268 8 C -0.188 4.188 9 C 0.346 3.654 10 O -0.381 6.381 11 O -0.267 6.267 12 C 0.022 3.978 13 C 0.042 3.958 14 C -0.197 4.197 15 C -0.202 4.202 16 C -0.557 4.557 17 H 0.094 0.906 18 C -0.124 4.124 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.212 1.212 22 H -0.233 1.233 23 H -0.172 1.172 24 C -0.029 4.029 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.182 0.818 31 H 0.266 0.734 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.097 -9.512 -20.837 23.001 hybrid contribution 0.386 -1.156 1.140 1.669 sum -1.711 -10.668 -19.698 22.466 Atomic orbital electron populations 1.21796 0.94304 1.02173 1.02522 1.20464 0.96424 0.90991 1.03680 1.20924 1.02905 0.98858 0.93540 1.22686 0.91210 0.88633 0.97946 1.67384 1.15399 1.08830 1.30887 1.19181 0.91669 0.84305 0.86149 1.84725 1.28056 1.18732 1.95301 1.20464 1.10209 0.95833 0.92274 1.20582 0.75576 0.84950 0.84314 1.90857 1.41592 1.17668 1.88029 1.86516 1.78550 1.46969 1.14683 1.23460 1.00764 0.93710 0.79825 1.18593 0.92800 0.92963 0.91400 1.22231 0.97779 0.99501 1.00191 1.22293 1.00380 0.98487 0.99083 1.20655 1.47213 0.99895 0.87952 0.90575 1.24909 0.93879 0.98017 0.95606 1.69939 1.48576 1.35241 0.98791 0.87290 0.78237 0.86640 0.76135 1.21229 1.23279 1.17241 1.21885 0.89687 0.91707 0.99583 0.92482 0.91954 0.92207 0.90386 0.90246 0.81818 0.73402 0.91500 0.91625 0.95041 0.92662 0.93740 0.93142 0.94142 0.94217 0.92418 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.57 16 2 C -0.08 -0.48 6.08 -27.89 -0.17 -0.65 16 3 C -0.16 -1.42 5.14 -104.55 -0.54 -1.96 16 4 C 0.15 1.40 10.84 -17.48 -0.19 1.21 16 5 N -0.51 -6.20 10.37 -12.97 -0.13 -6.33 16 6 C 0.37 4.99 7.77 -16.59 -0.13 4.86 16 7 O -0.46 -6.31 11.66 -39.71 -0.46 -6.77 16 8 C -0.18 -2.55 5.90 -104.71 -0.62 -3.17 16 9 C 0.50 8.62 7.90 34.45 0.27 8.90 16 10 O -0.49 -9.54 14.98 -26.57 -0.40 -9.94 16 11 O -0.35 -6.34 8.38 -40.65 -0.34 -6.68 16 12 C 0.09 1.96 4.26 37.16 0.16 2.12 16 13 C 0.04 0.98 0.58 -155.66 -0.09 0.89 16 14 C -0.14 -2.97 7.58 37.16 0.28 -2.69 16 15 C -0.15 -3.05 7.55 37.16 0.28 -2.77 16 16 C -0.52 -14.04 8.62 -34.44 -0.30 -14.34 16 17 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 18 C 0.08 2.20 5.32 -17.82 -0.09 2.10 16 19 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 20 Si 0.88 21.11 22.79 -169.99 -3.87 17.23 16 21 H -0.28 -6.73 7.10 56.52 0.40 -6.33 16 22 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 23 H -0.25 -5.40 4.65 56.52 0.26 -5.14 16 24 C 0.00 -0.04 9.40 -38.88 -0.37 -0.40 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.41 3.79 9.06 45.56 0.41 4.21 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.03 0.58 7.94 -51.93 -0.41 0.17 16 35 H 0.05 1.22 4.30 -51.93 -0.22 1.00 16 36 H 0.04 0.92 8.12 -51.92 -0.42 0.50 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 39 H 0.04 0.72 7.68 -51.93 -0.40 0.32 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.16 1.64 7.70 -52.48 -0.40 1.24 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -32.48 334.27 -5.59 -38.06 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.06 Total: 1.58 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.13 Total: -6.49 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.64 Total: -32.05 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -1.20 Total: -23.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -3.87 Total: 17.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.48 -5.59 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850950365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.595 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds