Wall clock time and date at job start Tue Mar 31 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50693 * 109.47498 * 2 1 4 4 C 1.38371 * 120.26610 * 270.02504 * 3 2 1 5 5 N 1.31884 * 121.19992 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.80453 * 359.76996 * 5 4 3 7 7 O 1.35415 * 119.80637 * 180.26208 * 6 5 4 8 8 C 1.40339 * 120.39008 * 0.49263 * 6 5 4 9 9 C 1.47381 * 120.60319 * 179.77379 * 8 6 5 10 10 O 1.21511 * 120.00277 * 359.71905 * 9 8 6 11 11 O 1.34757 * 120.00080 * 179.72089 * 9 8 6 12 12 C 1.45202 * 116.99959 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47206 * 299.99992 * 13 12 11 15 15 C 1.53000 * 109.47263 * 59.99967 * 13 12 11 16 16 C 1.50701 * 109.47356 * 179.97438 * 13 12 11 17 17 H 1.08004 * 119.99737 * 1.36219 * 16 13 12 18 18 C 1.37877 * 120.00297 * 181.35954 * 16 13 12 19 19 N 1.31514 * 120.00215 * 193.96607 * 18 16 13 20 20 Si 1.86798 * 119.99754 * 13.96240 * 18 16 13 21 21 H 1.48508 * 109.46935 * 84.55825 * 20 18 16 22 22 H 1.48497 * 109.47167 * 204.55524 * 20 18 16 23 23 H 1.48500 * 109.47371 * 324.55609 * 20 18 16 24 24 C 1.38312 * 120.27037 * 89.99973 * 3 2 1 25 25 H 1.09004 * 109.47210 * 59.99973 * 1 2 3 26 26 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47162 * 300.00063 * 1 2 3 28 28 H 1.08999 * 109.47156 * 239.99509 * 2 1 3 29 29 H 1.09004 * 109.47210 * 120.00027 * 2 1 3 30 30 H 1.08001 * 119.40301 * 359.97370 * 4 3 2 31 31 H 0.96693 * 114.00165 * 270.22671 * 7 6 5 32 32 H 1.09005 * 109.47156 * 60.00164 * 12 11 9 33 33 H 1.08992 * 109.47264 * 299.99827 * 12 11 9 34 34 H 1.09005 * 109.47287 * 69.31300 * 14 13 12 35 35 H 1.09000 * 109.47153 * 189.31413 * 14 13 12 36 36 H 1.09008 * 109.47270 * 309.31509 * 14 13 12 37 37 H 1.09005 * 109.46944 * 59.99682 * 15 13 12 38 38 H 1.08998 * 109.47240 * 180.02562 * 15 13 12 39 39 H 1.09003 * 109.46901 * 300.00273 * 15 13 12 40 40 H 0.96994 * 120.00257 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.82607 * 0.04429 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2644 2.0784 -1.1951 5 7 2.7035 3.3218 -1.2166 6 6 2.9376 3.9975 -0.1043 7 8 3.3831 5.2744 -0.1736 8 6 2.7318 3.3976 1.1476 9 6 2.9959 4.1447 2.3902 10 8 3.4006 5.2892 2.3367 11 8 2.7887 3.5586 3.5858 12 6 3.0695 4.3543 4.7675 13 6 2.7764 3.5270 6.0207 14 6 1.3042 3.1106 6.0243 15 6 3.6598 2.2778 6.0254 16 6 3.0684 4.3526 7.2472 17 1 3.4060 5.3732 7.1433 18 6 2.9043 3.8051 8.5020 19 7 2.8885 4.5832 9.5621 20 14 2.7046 1.9580 8.6961 21 1 4.0436 1.3169 8.7369 22 1 1.9786 1.6686 9.9587 23 1 1.9330 1.4200 7.5470 24 6 2.2648 2.0780 1.1945 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0825 1.5642 -2.1273 31 1 4.3465 5.3542 -0.1960 32 1 2.4397 5.2440 4.7644 33 1 4.1181 4.6513 4.7648 34 1 1.1308 2.3816 5.2326 35 1 1.0544 2.6667 6.9879 36 1 0.6783 3.9868 5.8547 37 1 4.7086 2.5745 6.0229 38 1 3.4507 1.6883 6.9180 39 1 3.4490 1.6805 5.1383 40 1 2.7735 4.1980 10.4448 41 1 2.0914 1.5856 2.1400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850950365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:04 Heat of formation + Delta-G solvation = -109.123103 kcal Electronic energy + Delta-G solvation = -23737.544972 eV Core-core repulsion = 20196.512505 eV Total energy + Delta-G solvation = -3541.032467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10750 -40.89588 -38.70597 -38.23323 -36.67850 -35.22393 -33.94176 -33.49439 -30.14313 -28.25851 -27.98363 -27.06242 -25.88790 -25.01846 -23.45785 -21.70521 -20.99159 -19.94366 -18.94867 -18.31247 -17.96215 -17.56121 -17.22743 -17.15335 -16.91650 -15.78823 -15.26322 -15.06093 -14.81587 -14.76061 -14.58851 -14.37033 -14.18541 -13.95885 -13.78566 -13.70546 -13.33648 -13.03521 -12.87081 -12.44529 -12.41684 -12.22970 -12.00975 -11.88042 -11.81162 -11.61318 -11.49200 -11.09681 -11.05996 -10.63715 -10.61880 -10.41246 -9.90004 -8.33994 -6.37230 -0.66526 -0.02243 1.36816 1.37719 1.41512 1.50818 1.54765 2.32953 2.37801 2.63522 3.02028 3.36918 3.63566 3.66125 3.83285 4.01294 4.10910 4.11509 4.20667 4.38000 4.47963 4.55463 4.58173 4.71649 4.78961 4.82101 4.86761 4.92191 4.93179 5.08724 5.14273 5.19899 5.34163 5.36050 5.41732 5.44288 5.51249 5.65281 5.72303 6.24055 6.43085 6.63490 6.67022 6.70713 7.28163 8.82766 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.004232 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.260097 B = 6615.116650 C = 7735.276196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.146 4.146 4 C 0.162 3.838 5 N -0.522 5.522 6 C 0.355 3.645 7 O -0.480 6.480 8 C -0.205 4.205 9 C 0.503 3.497 10 O -0.524 6.524 11 O -0.342 6.342 12 C 0.107 3.893 13 C 0.039 3.961 14 C -0.138 4.138 15 C -0.144 4.144 16 C -0.525 4.525 17 H 0.030 0.970 18 C 0.023 3.977 19 N -0.942 5.942 20 Si 0.942 3.058 21 H -0.278 1.278 22 H -0.311 1.311 23 H -0.207 1.207 24 C -0.004 4.004 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.205 0.795 31 H 0.419 0.581 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.267 0.733 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -14.518 -22.989 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.148 4.148 4 C 0.005 3.995 5 N -0.241 5.241 6 C 0.177 3.823 7 O -0.291 6.291 8 C -0.210 4.210 9 C 0.348 3.652 10 O -0.415 6.415 11 O -0.258 6.258 12 C 0.033 3.967 13 C 0.038 3.962 14 C -0.195 4.195 15 C -0.200 4.200 16 C -0.563 4.563 17 H 0.049 0.951 18 C -0.175 4.175 19 N -0.581 5.581 20 Si 0.771 3.229 21 H -0.205 1.205 22 H -0.240 1.240 23 H -0.131 1.131 24 C -0.029 4.029 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.222 0.778 31 H 0.281 0.719 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.957 -13.505 -23.538 27.298 hybrid contribution 0.652 0.144 1.819 1.938 sum -2.304 -13.362 -21.719 25.604 Atomic orbital electron populations 1.21808 0.94233 1.02904 1.01945 1.20565 0.96250 0.89023 1.05378 1.21233 1.01144 1.00015 0.92386 1.23437 0.88762 0.87529 0.99772 1.67478 1.16313 1.10219 1.30092 1.19289 0.92182 0.84342 0.86530 1.84668 1.29450 1.19551 1.95382 1.20299 1.13173 0.97039 0.90453 1.21197 0.74470 0.84879 0.84650 1.90841 1.43216 1.19181 1.88265 1.86483 1.78782 1.46166 1.14399 1.23017 0.99784 0.93122 0.80747 1.18531 0.94365 0.93364 0.89913 1.22169 0.96252 1.00164 1.00908 1.22233 0.99774 0.97589 1.00440 1.20925 1.46337 0.98682 0.90347 0.95126 1.25784 0.93597 1.03124 0.95019 1.70089 1.50816 1.37673 0.99492 0.86345 0.78964 0.80554 0.77019 1.20483 1.24015 1.13094 1.22063 0.89224 0.90537 1.01081 0.92235 0.90625 0.93679 0.87744 0.89613 0.77850 0.71918 0.93244 0.92595 0.91680 0.93400 0.94334 0.93408 0.94524 0.90764 0.92409 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 71.98 0.71 -0.56 16 2 C -0.07 -0.56 6.08 29.84 0.18 -0.38 16 3 C -0.15 -2.02 5.14 -19.82 -0.10 -2.12 16 4 C 0.16 2.34 10.84 84.72 0.92 3.26 16 5 N -0.52 -11.64 10.37 -307.95 -3.19 -14.83 16 6 C 0.36 9.38 7.77 85.14 0.66 10.05 16 7 O -0.48 -13.32 11.66 -66.28 -0.77 -14.10 16 8 C -0.20 -5.48 5.90 -19.92 -0.12 -5.60 16 9 C 0.50 17.18 7.90 70.23 0.55 17.74 16 10 O -0.52 -20.90 14.98 26.77 0.40 -20.50 16 11 O -0.34 -11.99 8.38 -56.67 -0.48 -12.47 16 12 C 0.11 4.45 4.26 71.98 0.31 4.76 16 13 C 0.04 1.73 0.58 -52.93 -0.03 1.70 16 14 C -0.14 -5.56 7.58 71.98 0.55 -5.02 16 15 C -0.14 -5.63 7.55 71.98 0.54 -5.09 16 16 C -0.53 -29.26 8.62 25.60 0.22 -29.04 16 17 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 18 C 0.02 1.30 5.32 84.65 0.45 1.75 16 19 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 20 Si 0.94 42.71 22.79 68.60 1.56 44.28 16 21 H -0.28 -12.23 7.10 99.48 0.71 -11.53 16 22 H -0.31 -14.37 7.11 99.48 0.71 -13.67 16 23 H -0.21 -8.08 4.65 99.48 0.46 -7.62 16 24 C 0.00 -0.08 9.40 22.73 0.21 0.14 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.10 0.31 8.09 -2.39 -0.02 0.30 16 29 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 30 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.42 8.13 9.06 -74.06 -0.67 7.46 16 32 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.06 2.18 7.94 -2.38 -0.02 2.16 16 35 H 0.05 1.99 4.30 -2.39 -0.01 1.98 16 36 H 0.04 1.56 8.12 -2.38 -0.02 1.54 16 37 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.04 1.47 2.25 -2.39 -0.01 1.46 16 39 H 0.07 2.39 7.68 -2.39 -0.02 2.38 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.16 2.90 7.70 -2.91 -0.02 2.88 16 Total: -1.00 -73.39 334.27 3.02 -70.38 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.14 Total: 13.54 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.06 Total: -8.41 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -2.89 Total: -72.73 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.85 Total: -47.06 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.56 Total: 44.28 kcal Total: -73.39 3.02 -70.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850950365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.747 kcal (2) G-P(sol) polarization free energy of solvation -73.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds