Wall clock time and date at job start Tue Mar 31 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39916 * 120.46433 * 2 1 4 4 N 1.31705 * 119.83498 * 179.97438 * 3 2 1 5 5 C 1.33480 * 120.82616 * 359.71331 * 4 3 2 6 6 S 1.71201 * 119.51237 * 180.30133 * 5 4 3 7 7 N 1.34619 * 120.97049 * 0.57089 * 5 4 3 8 8 C 1.46495 * 119.93755 * 179.71363 * 7 5 4 9 9 N 1.46895 * 109.47020 * 284.72594 * 8 7 5 10 10 C 1.46850 * 110.99906 * 294.20464 * 9 8 7 11 11 C 1.53031 * 109.52355 * 174.15930 * 10 9 8 12 12 C 1.53126 * 109.27828 * 59.18476 * 11 10 9 13 13 C 1.53115 * 109.16077 * 302.34522 * 12 11 10 14 14 H 1.08996 * 109.53617 * 297.69185 * 13 12 11 15 15 C 1.50701 * 109.50482 * 177.59274 * 13 12 11 16 16 H 1.08000 * 119.99661 * 245.54953 * 15 13 12 17 17 C 1.37873 * 120.00106 * 65.54828 * 15 13 12 18 18 N 1.31515 * 119.99746 * 5.14716 * 17 15 13 19 19 Si 1.86798 * 120.00199 * 185.14886 * 17 15 13 20 20 H 1.48498 * 109.47325 * 84.99548 * 19 17 15 21 21 H 1.48505 * 109.46745 * 324.99831 * 19 17 15 22 22 H 1.48501 * 109.47161 * 204.99866 * 19 17 15 23 23 C 1.46856 * 111.00101 * 170.00421 * 9 8 7 24 24 C 1.35941 * 120.11965 * 359.43429 * 7 5 4 25 25 H 1.09003 * 109.47300 * 270.02172 * 1 2 3 26 26 H 1.09000 * 109.47456 * 30.02869 * 1 2 3 27 27 H 1.09010 * 109.47128 * 150.02498 * 1 2 3 28 28 H 1.07999 * 120.08772 * 359.95226 * 3 2 1 29 29 H 1.08993 * 109.47004 * 164.72230 * 8 7 5 30 30 H 1.09005 * 109.47250 * 44.72735 * 8 7 5 31 31 H 1.08997 * 109.46656 * 294.17982 * 10 9 8 32 32 H 1.09001 * 109.45837 * 54.14893 * 10 9 8 33 33 H 1.09003 * 109.50464 * 179.12259 * 11 10 9 34 34 H 1.09003 * 109.50882 * 299.24662 * 11 10 9 35 35 H 1.08993 * 109.52361 * 182.43934 * 12 11 10 36 36 H 1.09003 * 109.51764 * 62.24629 * 12 11 10 37 37 H 0.96997 * 120.00093 * 180.02562 * 18 17 15 38 38 H 1.08994 * 109.46080 * 65.81784 * 23 9 8 39 39 H 1.09001 * 109.45468 * 305.85002 * 23 9 8 40 40 H 1.08003 * 120.40748 * 180.29806 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.2060 0.0000 4 7 3.5333 1.1915 0.0005 5 6 4.2047 0.0379 0.0068 6 16 5.9166 0.0584 0.0151 7 7 3.5555 -1.1414 0.0012 8 6 4.3151 -2.3941 0.0019 9 7 4.8761 -2.6273 -1.3355 10 6 3.8112 -2.8589 -2.3198 11 6 4.4209 -2.9527 -3.7203 12 6 5.4326 -4.1016 -3.7554 13 6 6.5039 -3.8605 -2.6883 14 1 7.0411 -2.9391 -2.9128 15 6 7.4709 -5.0163 -2.6761 16 1 7.5328 -5.6594 -1.8106 17 6 8.2765 -5.2528 -3.7697 18 7 8.2748 -4.4127 -4.7815 19 14 9.3702 -6.7665 -3.8143 20 1 8.5904 -7.9261 -4.3166 21 1 9.8662 -7.0592 -2.4454 22 1 10.5236 -6.5175 -4.7160 23 6 5.8339 -3.7404 -1.3177 24 6 2.1965 -1.1720 0.0007 25 1 -0.3634 0.0004 1.0277 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3634 -0.8903 -0.5135 28 1 1.6854 2.1465 -0.0008 29 1 3.6546 -3.2193 0.2679 30 1 5.1245 -2.3278 0.7290 31 1 3.2958 -3.7902 -2.0849 32 1 3.1009 -2.0328 -2.2875 33 1 3.6320 -3.1402 -4.4488 34 1 4.9247 -2.0166 -3.9613 35 1 5.9010 -4.1445 -4.7386 36 1 4.9219 -5.0429 -3.5526 37 1 8.8413 -4.5792 -5.5511 38 1 5.3090 -4.6675 -1.0875 39 1 6.5926 -3.5544 -0.5576 40 1 1.6709 -2.1156 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853525558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:24 Heat of formation + Delta-G solvation = 66.424614 kcal Electronic energy + Delta-G solvation = -21653.579918 eV Core-core repulsion = 18595.205394 eV Total energy + Delta-G solvation = -3058.374524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84641 -38.45848 -35.96323 -34.31467 -33.30131 -31.63510 -29.94805 -28.33039 -27.13437 -25.01231 -24.81449 -23.65811 -22.12962 -21.40267 -18.85601 -18.52040 -18.48657 -16.92703 -16.61931 -15.97957 -15.18097 -14.90933 -14.49686 -14.35587 -14.27534 -13.79539 -13.49756 -13.35109 -13.06641 -12.73577 -12.50844 -12.39491 -12.10018 -11.80612 -11.35011 -10.97385 -10.93289 -10.78677 -10.72874 -10.31010 -10.23572 -10.20259 -9.95787 -9.51850 -9.16097 -8.77554 -8.31656 -8.00758 -7.37352 -7.00911 -5.97735 -4.01886 0.03993 0.60377 1.93013 2.57156 2.95387 3.32398 3.39504 3.41721 3.78571 3.98250 4.06754 4.26215 4.39884 4.48737 4.64327 4.79417 5.09724 5.19909 5.26701 5.32948 5.39275 5.40008 5.48540 5.53320 5.79028 5.90262 6.03655 6.12150 6.22418 6.38512 6.52206 6.60138 6.84835 7.09734 7.18782 7.34959 7.41448 7.55134 7.74538 8.01367 8.13403 8.44760 9.02575 9.61833 11.10918 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.004082 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.071220 B = 6857.333202 C = 7311.692090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.224 4.224 3 C 0.222 3.778 4 N -0.479 5.479 5 C 0.438 3.562 6 S -0.508 6.508 7 N -0.444 5.444 8 C 0.255 3.745 9 N -0.528 5.528 10 C 0.059 3.941 11 C -0.114 4.114 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.045 0.955 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.275 1.275 22 H -0.287 1.287 23 C 0.080 3.920 24 C 0.162 3.838 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.179 0.821 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.260 0.740 38 H 0.022 0.978 39 H 0.071 0.929 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.028 5.589 9.499 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.237 4.237 3 C 0.033 3.967 4 N -0.194 5.194 5 C 0.090 3.910 6 S -0.360 6.360 7 N -0.131 5.131 8 C 0.043 3.957 9 N -0.253 5.253 10 C -0.069 4.069 11 C -0.152 4.152 12 C -0.143 4.143 13 C 0.037 3.963 14 H 0.064 0.936 15 C -0.556 4.556 16 H 0.072 0.928 17 C -0.137 4.137 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.200 1.200 22 H -0.213 1.213 23 C -0.046 4.046 24 C 0.019 3.981 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.196 0.804 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.484 6.541 9.182 21.651 hybrid contribution -1.395 -2.183 0.011 2.591 sum -19.878 4.358 9.193 22.331 Atomic orbital electron populations 1.20548 0.87977 1.03780 1.02907 1.20507 0.99078 0.92566 1.11567 1.24058 0.90611 0.98545 0.83519 1.70226 1.08219 1.24237 1.16675 1.24162 0.99898 0.80982 0.85988 1.93152 0.87589 1.93582 1.61725 1.46315 1.05732 1.10580 1.50476 1.22755 0.96087 0.80260 0.96616 1.61846 1.15575 1.45740 1.02148 1.22122 0.92626 0.97459 0.94646 1.21627 0.98809 1.01769 0.93007 1.21618 0.95367 0.93705 1.03653 1.18664 0.92267 0.98164 0.87163 0.93641 1.21052 1.20551 1.12593 1.01367 0.92796 1.24925 0.96538 0.96297 0.95904 1.69950 1.39608 1.35300 1.07484 0.86662 0.80230 0.83442 0.77963 1.20757 1.19959 1.21283 1.22291 0.92494 0.86926 1.02920 1.22829 0.83617 1.01190 0.90461 0.90742 0.90485 0.91048 0.80444 0.91661 0.85669 0.95492 0.93588 0.93396 0.91809 0.90299 0.94915 0.92998 0.95973 0.91033 0.80523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.28 10.04 36.00 0.36 0.09 16 2 C -0.22 -1.50 5.87 -104.81 -0.62 -2.11 16 3 C 0.22 1.95 11.00 -16.98 -0.19 1.76 16 4 N -0.48 -6.95 10.39 -13.80 -0.14 -7.09 16 5 C 0.44 7.23 7.62 -88.21 -0.67 6.56 16 6 S -0.51 -10.93 28.71 -107.50 -3.09 -14.02 16 7 N -0.44 -5.68 2.31 -121.62 -0.28 -5.96 16 8 C 0.26 3.51 4.64 -63.33 -0.29 3.21 16 9 N -0.53 -9.34 4.36 -238.58 -1.04 -10.38 16 10 C 0.06 0.95 5.31 -3.84 -0.02 0.93 16 11 C -0.11 -2.18 6.09 -26.65 -0.16 -2.34 16 12 C -0.11 -2.41 5.09 -26.61 -0.14 -2.54 16 13 C 0.06 1.40 2.13 -91.69 -0.20 1.21 16 14 H 0.05 1.33 8.12 -51.93 -0.42 0.90 16 15 C -0.52 -14.09 8.49 -34.44 -0.29 -14.38 16 16 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 17 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 18 N -0.89 -25.75 11.98 55.43 0.66 -25.08 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 C 0.08 1.63 4.68 -3.83 -0.02 1.61 16 24 C 0.16 1.31 8.99 -16.54 -0.15 1.16 16 25 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.08 0.16 8.10 -51.93 -0.42 -0.26 16 27 H 0.07 0.16 8.09 -51.92 -0.42 -0.26 16 28 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 30 H 0.13 1.90 7.11 -51.93 -0.37 1.53 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.66 6.67 -51.93 -0.35 0.32 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 2.04 6.80 -51.93 -0.35 1.69 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.51 8.02 -51.93 -0.42 1.09 16 40 H 0.18 0.77 7.94 -52.48 -0.42 0.35 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -35.46 335.48 -12.40 -47.85 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.07 Total: -3.60 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.47 Total: -3.12 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.80 Total: -48.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -10.93 SS G_CDS: -3.09 Total: -14.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.46 -12.40 -47.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.275 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds