Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39916 * 120.46433 * 2 1 4 4 N 1.31705 * 119.83498 * 179.97438 * 3 2 1 5 5 C 1.33480 * 120.82616 * 359.71331 * 4 3 2 6 6 S 1.71201 * 119.51237 * 180.30133 * 5 4 3 7 7 N 1.34619 * 120.97049 * 0.57089 * 5 4 3 8 8 C 1.46495 * 119.93755 * 179.71363 * 7 5 4 9 9 N 1.46895 * 109.47020 * 284.72594 * 8 7 5 10 10 C 1.46850 * 110.99906 * 294.20464 * 9 8 7 11 11 C 1.53031 * 109.52355 * 174.15930 * 10 9 8 12 12 C 1.53126 * 109.27828 * 59.18476 * 11 10 9 13 13 C 1.53115 * 109.16077 * 302.34522 * 12 11 10 14 14 H 1.08996 * 109.53617 * 297.69185 * 13 12 11 15 15 C 1.50701 * 109.50482 * 177.59274 * 13 12 11 16 16 H 1.08000 * 119.99661 * 245.54953 * 15 13 12 17 17 C 1.37873 * 120.00106 * 65.54828 * 15 13 12 18 18 N 1.31515 * 119.99746 * 5.14716 * 17 15 13 19 19 Si 1.86798 * 120.00199 * 185.14886 * 17 15 13 20 20 H 1.48498 * 109.47325 * 84.99548 * 19 17 15 21 21 H 1.48505 * 109.46745 * 324.99831 * 19 17 15 22 22 H 1.48501 * 109.47161 * 204.99866 * 19 17 15 23 23 C 1.46856 * 111.00101 * 170.00421 * 9 8 7 24 24 C 1.35941 * 120.11965 * 359.43429 * 7 5 4 25 25 H 1.09003 * 109.47300 * 270.02172 * 1 2 3 26 26 H 1.09000 * 109.47456 * 30.02869 * 1 2 3 27 27 H 1.09010 * 109.47128 * 150.02498 * 1 2 3 28 28 H 1.07999 * 120.08772 * 359.95226 * 3 2 1 29 29 H 1.08993 * 109.47004 * 164.72230 * 8 7 5 30 30 H 1.09005 * 109.47250 * 44.72735 * 8 7 5 31 31 H 1.08997 * 109.46656 * 294.17982 * 10 9 8 32 32 H 1.09001 * 109.45837 * 54.14893 * 10 9 8 33 33 H 1.09003 * 109.50464 * 179.12259 * 11 10 9 34 34 H 1.09003 * 109.50882 * 299.24662 * 11 10 9 35 35 H 1.08993 * 109.52361 * 182.43934 * 12 11 10 36 36 H 1.09003 * 109.51764 * 62.24629 * 12 11 10 37 37 H 0.96997 * 120.00093 * 180.02562 * 18 17 15 38 38 H 1.08994 * 109.46080 * 65.81784 * 23 9 8 39 39 H 1.09001 * 109.45468 * 305.85002 * 23 9 8 40 40 H 1.08003 * 120.40748 * 180.29806 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.2060 0.0000 4 7 3.5333 1.1915 0.0005 5 6 4.2047 0.0379 0.0068 6 16 5.9166 0.0584 0.0151 7 7 3.5555 -1.1414 0.0012 8 6 4.3151 -2.3941 0.0019 9 7 4.8761 -2.6273 -1.3355 10 6 3.8112 -2.8589 -2.3198 11 6 4.4209 -2.9527 -3.7203 12 6 5.4326 -4.1016 -3.7554 13 6 6.5039 -3.8605 -2.6883 14 1 7.0411 -2.9391 -2.9128 15 6 7.4709 -5.0163 -2.6761 16 1 7.5328 -5.6594 -1.8106 17 6 8.2765 -5.2528 -3.7697 18 7 8.2748 -4.4127 -4.7815 19 14 9.3702 -6.7665 -3.8143 20 1 8.5904 -7.9261 -4.3166 21 1 9.8662 -7.0592 -2.4454 22 1 10.5236 -6.5175 -4.7160 23 6 5.8339 -3.7404 -1.3177 24 6 2.1965 -1.1720 0.0007 25 1 -0.3634 0.0004 1.0277 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3634 -0.8903 -0.5135 28 1 1.6854 2.1465 -0.0008 29 1 3.6546 -3.2193 0.2679 30 1 5.1245 -2.3278 0.7290 31 1 3.2958 -3.7902 -2.0849 32 1 3.1009 -2.0328 -2.2875 33 1 3.6320 -3.1402 -4.4488 34 1 4.9247 -2.0166 -3.9613 35 1 5.9010 -4.1445 -4.7386 36 1 4.9219 -5.0429 -3.5526 37 1 8.8413 -4.5792 -5.5511 38 1 5.3090 -4.6675 -1.0875 39 1 6.5926 -3.5544 -0.5576 40 1 1.6709 -2.1156 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = 41.868798 kcal Electronic energy + Delta-G solvation = -21654.644739 eV Core-core repulsion = 18595.205394 eV Total energy + Delta-G solvation = -3059.439344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.86392 -39.88605 -37.17146 -35.11973 -35.07553 -33.24457 -31.73778 -28.95486 -28.28110 -26.95770 -25.77486 -24.67470 -23.62037 -22.96432 -20.47936 -19.56866 -19.48299 -18.55221 -17.75920 -17.49612 -16.53337 -16.13678 -16.01584 -15.65653 -15.19275 -14.96579 -14.83372 -14.41385 -14.10273 -13.86594 -13.82050 -13.56048 -13.24916 -12.98799 -12.82081 -12.71977 -12.60233 -12.42219 -12.27851 -11.95384 -11.79655 -11.43976 -11.13158 -11.08311 -10.89659 -10.72811 -10.42425 -9.31180 -8.80701 -8.55012 -8.10981 -6.22889 -0.86885 -0.24443 0.82697 1.34547 1.40170 1.42022 1.51398 2.05594 2.42358 2.87703 2.94552 3.19218 3.39063 3.39923 3.70104 3.85401 3.95027 4.11288 4.14834 4.24604 4.36719 4.48562 4.53460 4.62279 4.78252 4.86901 4.93095 4.96095 4.99531 5.09063 5.11726 5.18236 5.32517 5.41008 5.48188 5.62360 5.85761 6.08107 6.11303 6.14072 6.40338 6.40929 6.91697 7.45032 8.97291 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.004082 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.071220 B = 6857.333202 C = 7311.692090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.186 4.186 3 C 0.222 3.778 4 N -0.521 5.521 5 C 0.467 3.533 6 S -0.689 6.689 7 N -0.432 5.432 8 C 0.258 3.742 9 N -0.557 5.557 10 C 0.068 3.932 11 C -0.109 4.109 12 C -0.095 4.095 13 C 0.054 3.946 14 H -0.019 1.019 15 C -0.533 4.533 16 H 0.058 0.942 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.956 3.044 20 H -0.268 1.268 21 H -0.268 1.268 22 H -0.289 1.289 23 C 0.100 3.900 24 C 0.154 3.846 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.223 0.777 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.045 0.955 37 H 0.259 0.741 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.236 4.045 10.663 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.197 4.197 3 C 0.041 3.959 4 N -0.237 5.237 5 C 0.111 3.889 6 S -0.545 6.545 7 N -0.115 5.115 8 C 0.047 3.953 9 N -0.283 5.283 10 C -0.059 4.059 11 C -0.147 4.147 12 C -0.133 4.133 13 C 0.035 3.965 14 H 0.000 1.000 15 C -0.572 4.572 16 H 0.076 0.924 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.781 3.219 20 H -0.193 1.193 21 H -0.193 1.193 22 H -0.215 1.215 23 C -0.027 4.027 24 C 0.013 3.987 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.239 0.761 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -24.854 5.008 10.363 27.390 hybrid contribution 0.084 -1.609 -0.321 1.642 sum -24.770 3.400 10.042 26.944 Atomic orbital electron populations 1.20765 0.83913 1.05717 1.04753 1.21140 1.01392 0.90972 1.06227 1.24959 0.88642 1.01755 0.80576 1.70091 1.11201 1.23593 1.18819 1.23130 0.97369 0.82668 0.85750 1.93447 0.94679 1.94706 1.71710 1.46237 1.07777 1.09061 1.48443 1.22760 0.97056 0.81716 0.93796 1.61472 1.16767 1.45107 1.04936 1.22075 0.92062 1.00071 0.91719 1.21528 0.98404 0.98112 0.96627 1.21374 0.95570 0.95897 1.00455 1.18541 0.92733 0.94383 0.90848 1.00026 1.21498 1.21190 1.13172 1.01338 0.92399 1.25783 0.98156 0.99207 0.95597 1.70124 1.40607 1.37198 1.08133 0.85606 0.78253 0.79968 0.78049 1.19310 1.19254 1.21533 1.21778 0.92941 0.88890 0.99054 1.23908 0.81010 1.04364 0.89417 0.88659 0.88863 0.88969 0.76086 0.85828 0.88142 0.92063 0.91088 0.90308 0.95465 0.94422 0.93656 0.93234 0.93684 0.93272 0.74999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.23 10.04 71.24 0.71 0.95 16 2 C -0.19 -1.23 5.87 -19.98 -0.12 -1.35 16 3 C 0.22 2.90 11.00 85.12 0.94 3.84 16 4 N -0.52 -14.59 10.39 -197.56 -2.05 -16.64 16 5 C 0.47 15.55 7.62 179.51 1.37 16.92 16 6 S -0.69 -32.93 28.71 -56.49 -1.62 -34.56 16 7 N -0.43 -9.83 2.31 -538.69 -1.24 -11.07 16 8 C 0.26 6.56 4.64 170.81 0.79 7.35 16 9 N -0.56 -19.43 4.36 -908.73 -3.96 -23.39 16 10 C 0.07 1.95 5.31 86.32 0.46 2.40 16 11 C -0.11 -4.09 6.09 30.65 0.19 -3.90 16 12 C -0.09 -4.44 5.09 30.68 0.16 -4.28 16 13 C 0.05 2.84 2.13 -11.49 -0.02 2.81 16 14 H -0.02 -1.20 8.12 -2.39 -0.02 -1.22 16 15 C -0.53 -30.23 8.49 25.60 0.22 -30.01 16 16 H 0.06 3.15 7.75 -2.91 -0.02 3.12 16 17 C 0.01 0.64 5.28 84.65 0.45 1.09 16 18 N -0.92 -56.65 11.98 21.45 0.26 -56.40 16 19 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 C 0.10 4.18 4.68 86.32 0.40 4.58 16 24 C 0.15 1.47 8.99 83.53 0.75 2.22 16 25 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.09 -0.38 8.10 -2.39 -0.02 -0.40 16 27 H 0.09 -0.43 8.09 -2.38 -0.02 -0.45 16 28 H 0.22 0.83 8.06 -2.91 -0.02 0.80 16 29 H 0.12 1.78 7.83 -2.39 -0.02 1.76 16 30 H 0.10 3.14 7.11 -2.38 -0.02 3.13 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.69 6.67 -2.39 -0.02 1.67 16 33 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.04 2.04 6.80 -2.39 -0.02 2.03 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 2.22 8.02 -2.39 -0.02 2.20 16 40 H 0.23 -0.25 7.94 -2.91 -0.02 -0.27 16 Total: -1.00 -93.91 335.48 0.72 -93.19 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.02 Total: -0.77 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 6.29 Total: 2.63 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -7.00 Total: -107.50 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -32.93 SS G_CDS: -1.62 Total: -34.56 kcal Total: -93.91 0.72 -93.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.062 kcal (2) G-P(sol) polarization free energy of solvation -93.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds