Wall clock time and date at job start Tue Mar 31 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39923 * 120.46277 * 2 1 4 4 N 1.31706 * 119.82855 * 180.02562 * 3 2 1 5 5 C 1.33472 * 120.83181 * 359.97438 * 4 3 2 6 6 S 1.71207 * 119.51410 * 179.97438 * 5 4 3 7 7 N 1.34613 * 120.97273 * 0.02562 * 5 4 3 8 8 C 1.46498 * 119.94152 * 179.72086 * 7 5 4 9 9 N 1.46901 * 109.46959 * 74.25062 * 8 7 5 10 10 C 1.46853 * 110.99980 * 75.52729 * 9 8 7 11 11 C 1.53039 * 109.52419 * 185.83818 * 10 9 8 12 12 C 1.53123 * 109.27520 * 300.82002 * 11 10 9 13 13 C 1.53111 * 109.16353 * 57.65545 * 12 11 10 14 14 H 1.09001 * 109.50774 * 62.32492 * 13 12 11 15 15 C 1.50701 * 109.50502 * 182.40482 * 13 12 11 16 16 H 1.07998 * 120.00301 * 119.99574 * 15 13 12 17 17 C 1.37878 * 119.99617 * 299.99808 * 15 13 12 18 18 N 1.31512 * 120.00297 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99759 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47141 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46658 * 120.00315 * 19 17 15 22 22 H 1.48502 * 109.47252 * 239.99967 * 19 17 15 23 23 C 1.46850 * 111.00026 * 199.73155 * 9 8 7 24 24 C 1.35938 * 120.12212 * 359.97438 * 7 5 4 25 25 H 1.09000 * 109.47446 * 90.00422 * 1 2 3 26 26 H 1.09001 * 109.46887 * 210.00371 * 1 2 3 27 27 H 1.09004 * 109.47046 * 330.00013 * 1 2 3 28 28 H 1.07997 * 120.08744 * 0.04129 * 3 2 1 29 29 H 1.09000 * 109.47364 * 194.25212 * 8 7 5 30 30 H 1.09004 * 109.46718 * 314.25778 * 8 7 5 31 31 H 1.09000 * 109.45676 * 305.85238 * 10 9 8 32 32 H 1.08999 * 109.46408 * 65.81955 * 10 9 8 33 33 H 1.08996 * 109.50090 * 60.75497 * 11 10 9 34 34 H 1.08996 * 109.50228 * 180.87884 * 11 10 9 35 35 H 1.08999 * 109.51728 * 177.56400 * 12 11 10 36 36 H 1.08999 * 109.51953 * 297.68450 * 12 11 10 37 37 H 0.96998 * 120.00193 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46115 * 294.18296 * 23 9 8 39 39 H 1.09005 * 109.46206 * 54.14527 * 23 9 8 40 40 H 1.08003 * 120.41451 * 179.97438 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.2061 0.0000 4 7 3.5334 1.1915 -0.0005 5 6 4.2047 0.0379 -0.0005 6 16 5.9166 0.0583 -0.0019 7 7 3.5556 -1.1414 -0.0005 8 6 4.3151 -2.3941 -0.0067 9 7 4.8961 -2.6210 1.3233 10 6 3.8728 -3.0735 2.2744 11 6 4.4799 -3.1594 3.6766 12 6 5.6561 -4.1396 3.6589 13 6 6.6849 -3.6717 2.6259 14 1 7.0723 -2.6947 2.9148 15 6 7.8183 -4.6628 2.5599 16 1 8.0404 -5.1681 1.6317 17 6 8.5716 -4.9244 3.6847 18 7 8.3008 -4.3095 4.8152 19 14 9.9760 -6.1534 3.6031 20 1 10.0730 -6.7037 2.2272 21 1 11.2489 -5.4744 3.9551 22 1 9.7230 -7.2587 4.5621 23 6 6.0138 -3.5710 1.2542 24 6 2.1965 -1.1720 0.0000 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6854 2.1465 0.0007 29 1 3.6507 -3.2206 -0.2588 30 1 5.1136 -2.3311 -0.7460 31 1 3.0441 -2.3655 2.2802 32 1 3.5084 -4.0564 1.9756 33 1 4.8321 -2.1740 3.9815 34 1 3.7243 -3.5102 4.3794 35 1 6.1187 -4.1712 4.6453 36 1 5.2976 -5.1340 3.3927 37 1 8.8310 -4.4933 5.6064 38 1 5.6394 -4.5515 0.9601 39 1 6.7402 -3.2243 0.5191 40 1 1.6709 -2.1155 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853525559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:25 Heat of formation + Delta-G solvation = 66.755655 kcal Electronic energy + Delta-G solvation = -21649.511342 eV Core-core repulsion = 18591.151173 eV Total energy + Delta-G solvation = -3058.360169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.79837 -38.43643 -35.94327 -34.29261 -33.33648 -31.56552 -29.92969 -28.30432 -27.09226 -25.02433 -24.78402 -23.61590 -22.09598 -21.38905 -18.82142 -18.51186 -18.46793 -16.90431 -16.57613 -15.93271 -15.15757 -14.92432 -14.48454 -14.33857 -14.27714 -13.77032 -13.46140 -13.32686 -13.03359 -12.70805 -12.52813 -12.39936 -12.03323 -11.78107 -11.28709 -10.95960 -10.94136 -10.75480 -10.65939 -10.27864 -10.19238 -10.17980 -9.88785 -9.52858 -9.15436 -8.71916 -8.30945 -8.01096 -7.35494 -6.98276 -5.95037 -4.01097 0.06920 0.62781 1.96049 2.60068 2.98071 3.32496 3.40822 3.44023 3.80633 4.00086 4.08329 4.28632 4.41728 4.49770 4.64774 4.80467 5.10786 5.21217 5.26369 5.34462 5.40308 5.41769 5.50008 5.56628 5.82124 5.92489 6.07455 6.15094 6.26213 6.42749 6.56347 6.65573 6.89742 7.13435 7.24773 7.38270 7.44522 7.59820 7.77701 8.10395 8.17959 8.47347 9.02823 9.63120 11.11224 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.004127 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.519680 B = 6783.653475 C = 7287.028510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.225 4.225 3 C 0.222 3.778 4 N -0.480 5.480 5 C 0.439 3.561 6 S -0.510 6.510 7 N -0.442 5.442 8 C 0.253 3.747 9 N -0.528 5.528 10 C 0.059 3.941 11 C -0.115 4.115 12 C -0.110 4.110 13 C 0.057 3.943 14 H 0.039 0.961 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.081 3.919 24 C 0.163 3.837 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.178 0.822 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.259 0.741 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.173 4.831 -9.522 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.238 4.238 3 C 0.032 3.968 4 N -0.194 5.194 5 C 0.090 3.910 6 S -0.363 6.363 7 N -0.129 5.129 8 C 0.041 3.959 9 N -0.253 5.253 10 C -0.069 4.069 11 C -0.152 4.152 12 C -0.148 4.148 13 C 0.038 3.962 14 H 0.057 0.943 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.045 4.045 24 C 0.019 3.981 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.195 0.805 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -18.719 5.776 -9.166 21.629 hybrid contribution -1.128 -2.048 -0.127 2.341 sum -19.847 3.729 -9.294 22.230 Atomic orbital electron populations 1.20543 0.88021 1.03748 1.02873 1.20503 0.99046 0.92599 1.11661 1.24050 0.90616 0.98524 0.83590 1.70216 1.08215 1.24300 1.16676 1.24140 0.99898 0.80991 0.85956 1.93155 0.87628 1.93614 1.61859 1.46407 1.05701 1.10604 1.50208 1.22705 0.96116 0.80571 0.96557 1.61669 1.09698 1.49739 1.04205 1.22165 0.93112 0.96555 0.95026 1.21643 0.98824 1.01748 0.93023 1.21674 0.93742 0.94760 1.04654 1.18658 0.92236 0.97680 0.87613 0.94266 1.21134 1.14175 1.23805 0.96057 0.92706 1.24923 0.97235 0.96140 0.95506 1.69896 1.39822 1.42351 1.00561 0.86564 0.82502 0.81125 0.77954 1.19833 1.21002 1.21176 1.22284 0.89724 0.89727 1.02784 1.22823 0.83672 1.01137 0.90468 0.90773 0.91078 0.90514 0.80489 0.91313 0.85857 0.93560 0.95351 0.92024 0.93405 0.88900 0.95097 0.93114 0.95950 0.90947 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.28 10.04 36.01 0.36 0.08 16 2 C -0.22 -1.53 5.87 -104.80 -0.62 -2.14 16 3 C 0.22 1.98 11.00 -16.97 -0.19 1.79 16 4 N -0.48 -7.04 10.39 -13.80 -0.14 -7.19 16 5 C 0.44 7.31 7.61 -88.22 -0.67 6.64 16 6 S -0.51 -11.07 28.67 -107.50 -3.08 -14.15 16 7 N -0.44 -5.70 2.58 -121.61 -0.31 -6.01 16 8 C 0.25 3.47 4.69 -63.32 -0.30 3.18 16 9 N -0.53 -9.36 4.23 -238.56 -1.01 -10.37 16 10 C 0.06 0.95 5.34 -3.83 -0.02 0.93 16 11 C -0.11 -2.19 6.09 -26.65 -0.16 -2.35 16 12 C -0.11 -2.56 5.02 -26.61 -0.13 -2.69 16 13 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 14 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 15 C -0.51 -14.11 8.56 -34.44 -0.29 -14.40 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.68 11.35 55.43 0.63 -25.05 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.08 1.67 4.65 -3.83 -0.02 1.65 16 24 C 0.16 1.32 9.30 -16.54 -0.15 1.16 16 25 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.17 8.09 -51.93 -0.42 -0.25 16 27 H 0.08 0.16 8.10 -51.93 -0.42 -0.26 16 28 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.07 0.69 7.70 -51.93 -0.40 0.29 16 30 H 0.12 1.86 6.98 -51.93 -0.36 1.50 16 31 H 0.05 0.65 7.15 -51.93 -0.37 0.28 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 40 H 0.18 0.76 7.93 -52.48 -0.42 0.34 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -35.54 334.95 -12.43 -47.97 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -6.04 Total: -3.49 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.49 Total: -3.26 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.84 Total: -48.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -3.08 Total: -14.15 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.54 -12.43 -47.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.725 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds