Wall clock time and date at job start Tue Mar 31 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39923 * 120.46277 * 2 1 4 4 N 1.31706 * 119.82855 * 180.02562 * 3 2 1 5 5 C 1.33472 * 120.83181 * 359.97438 * 4 3 2 6 6 S 1.71207 * 119.51410 * 179.97438 * 5 4 3 7 7 N 1.34613 * 120.97273 * 0.02562 * 5 4 3 8 8 C 1.46498 * 119.94152 * 179.72086 * 7 5 4 9 9 N 1.46901 * 109.46959 * 74.25062 * 8 7 5 10 10 C 1.46853 * 110.99980 * 75.52729 * 9 8 7 11 11 C 1.53039 * 109.52419 * 185.83818 * 10 9 8 12 12 C 1.53123 * 109.27520 * 300.82002 * 11 10 9 13 13 C 1.53111 * 109.16353 * 57.65545 * 12 11 10 14 14 H 1.09001 * 109.50774 * 62.32492 * 13 12 11 15 15 C 1.50701 * 109.50502 * 182.40482 * 13 12 11 16 16 H 1.07998 * 120.00301 * 119.99574 * 15 13 12 17 17 C 1.37878 * 119.99617 * 299.99808 * 15 13 12 18 18 N 1.31512 * 120.00297 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99759 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47141 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46658 * 120.00315 * 19 17 15 22 22 H 1.48502 * 109.47252 * 239.99967 * 19 17 15 23 23 C 1.46850 * 111.00026 * 199.73155 * 9 8 7 24 24 C 1.35938 * 120.12212 * 359.97438 * 7 5 4 25 25 H 1.09000 * 109.47446 * 90.00422 * 1 2 3 26 26 H 1.09001 * 109.46887 * 210.00371 * 1 2 3 27 27 H 1.09004 * 109.47046 * 330.00013 * 1 2 3 28 28 H 1.07997 * 120.08744 * 0.04129 * 3 2 1 29 29 H 1.09000 * 109.47364 * 194.25212 * 8 7 5 30 30 H 1.09004 * 109.46718 * 314.25778 * 8 7 5 31 31 H 1.09000 * 109.45676 * 305.85238 * 10 9 8 32 32 H 1.08999 * 109.46408 * 65.81955 * 10 9 8 33 33 H 1.08996 * 109.50090 * 60.75497 * 11 10 9 34 34 H 1.08996 * 109.50228 * 180.87884 * 11 10 9 35 35 H 1.08999 * 109.51728 * 177.56400 * 12 11 10 36 36 H 1.08999 * 109.51953 * 297.68450 * 12 11 10 37 37 H 0.96998 * 120.00193 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46115 * 294.18296 * 23 9 8 39 39 H 1.09005 * 109.46206 * 54.14527 * 23 9 8 40 40 H 1.08003 * 120.41451 * 179.97438 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.2061 0.0000 4 7 3.5334 1.1915 -0.0005 5 6 4.2047 0.0379 -0.0005 6 16 5.9166 0.0583 -0.0019 7 7 3.5556 -1.1414 -0.0005 8 6 4.3151 -2.3941 -0.0067 9 7 4.8961 -2.6210 1.3233 10 6 3.8728 -3.0735 2.2744 11 6 4.4799 -3.1594 3.6766 12 6 5.6561 -4.1396 3.6589 13 6 6.6849 -3.6717 2.6259 14 1 7.0723 -2.6947 2.9148 15 6 7.8183 -4.6628 2.5599 16 1 8.0404 -5.1681 1.6317 17 6 8.5716 -4.9244 3.6847 18 7 8.3008 -4.3095 4.8152 19 14 9.9760 -6.1534 3.6031 20 1 10.0730 -6.7037 2.2272 21 1 11.2489 -5.4744 3.9551 22 1 9.7230 -7.2587 4.5621 23 6 6.0138 -3.5710 1.2542 24 6 2.1965 -1.1720 0.0000 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6854 2.1465 0.0007 29 1 3.6507 -3.2206 -0.2588 30 1 5.1136 -2.3311 -0.7460 31 1 3.0441 -2.3655 2.2802 32 1 3.5084 -4.0564 1.9756 33 1 4.8321 -2.1740 3.9815 34 1 3.7243 -3.5102 4.3794 35 1 6.1187 -4.1712 4.6453 36 1 5.2976 -5.1340 3.3927 37 1 8.8310 -4.4933 5.6064 38 1 5.6394 -4.5515 0.9601 39 1 6.7402 -3.2243 0.5191 40 1 1.6709 -2.1155 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:25 Heat of formation + Delta-G solvation = 42.102114 kcal Electronic energy + Delta-G solvation = -21650.580400 eV Core-core repulsion = 18591.151173 eV Total energy + Delta-G solvation = -3059.429227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.82096 -39.87667 -37.15819 -35.15810 -35.06345 -33.18230 -31.73276 -28.93620 -28.24490 -26.97676 -25.75622 -24.64413 -23.59586 -22.95892 -20.46271 -19.56837 -19.46714 -18.55026 -17.73372 -17.43232 -16.56183 -16.12286 -16.01455 -15.68641 -15.16335 -14.95613 -14.76388 -14.45477 -14.09735 -13.85921 -13.82059 -13.51312 -13.20856 -12.97203 -12.88409 -12.68404 -12.51873 -12.39924 -12.26668 -11.89061 -11.78044 -11.46414 -11.11893 -11.06584 -10.91196 -10.69543 -10.40676 -9.34254 -8.79958 -8.53521 -8.08857 -6.23358 -0.84784 -0.22743 0.85033 1.36746 1.38432 1.41196 1.52196 2.07261 2.41787 2.89251 2.96137 3.18505 3.40522 3.41766 3.70150 3.86755 3.97804 4.14040 4.15764 4.25365 4.38645 4.51440 4.55435 4.64666 4.80772 4.91339 4.94580 4.99109 5.00177 5.09966 5.13678 5.20546 5.33827 5.46970 5.49430 5.62152 5.87149 6.10993 6.15759 6.19404 6.41021 6.42806 6.90141 7.44741 8.96231 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.004127 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.519680 B = 6783.653475 C = 7287.028510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.187 4.187 3 C 0.221 3.779 4 N -0.522 5.522 5 C 0.467 3.533 6 S -0.691 6.691 7 N -0.431 5.431 8 C 0.256 3.744 9 N -0.555 5.555 10 C 0.067 3.933 11 C -0.109 4.109 12 C -0.100 4.100 13 C 0.056 3.944 14 H -0.023 1.023 15 C -0.533 4.533 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.103 3.897 24 C 0.155 3.845 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.222 0.778 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.038 0.962 37 H 0.259 0.741 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.207 3.327 -10.657 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.199 4.199 3 C 0.040 3.960 4 N -0.238 5.238 5 C 0.111 3.889 6 S -0.548 6.548 7 N -0.113 5.113 8 C 0.044 3.956 9 N -0.281 5.281 10 C -0.060 4.060 11 C -0.147 4.147 12 C -0.139 4.139 13 C 0.037 3.963 14 H -0.005 1.005 15 C -0.572 4.572 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.558 5.558 19 Si 0.782 3.218 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.024 4.024 24 C 0.014 3.986 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.238 0.762 29 H 0.147 0.853 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -24.916 4.285 -10.315 27.305 hybrid contribution 0.292 -1.487 0.205 1.529 sum -24.624 2.798 -10.110 26.766 Atomic orbital electron populations 1.20758 0.83939 1.05685 1.04726 1.21140 1.01377 0.91015 1.06335 1.24946 0.88651 1.01750 0.80698 1.70077 1.11209 1.23694 1.18843 1.23107 0.97367 0.82711 0.85763 1.93451 0.94736 1.94738 1.71842 1.46332 1.07776 1.09090 1.48149 1.22749 0.97127 0.81998 0.93734 1.61301 1.10155 1.49534 1.07072 1.22143 0.92771 0.99078 0.92049 1.21538 0.97938 0.98613 0.96594 1.21420 0.94671 0.96200 1.01565 1.18531 0.92911 0.93830 0.91068 1.00498 1.21545 1.15391 1.24187 0.96037 0.92731 1.25759 0.99763 0.98011 0.95179 1.70067 1.40846 1.43700 1.01143 0.85537 0.78971 0.78892 0.78430 1.18868 1.21301 1.20053 1.21740 0.90537 0.91192 0.98932 1.23915 0.81044 1.04336 0.89326 0.88680 0.88953 0.88938 0.76176 0.85338 0.88264 0.90332 0.92285 0.95345 0.90368 0.92886 0.94340 0.93198 0.94047 0.93522 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.22 10.04 71.24 0.71 0.93 16 2 C -0.19 -1.28 5.87 -19.98 -0.12 -1.40 16 3 C 0.22 2.97 11.00 85.12 0.94 3.91 16 4 N -0.52 -14.86 10.39 -197.56 -2.05 -16.91 16 5 C 0.47 15.73 7.61 179.51 1.37 17.10 16 6 S -0.69 -33.33 28.67 -56.49 -1.62 -34.95 16 7 N -0.43 -9.86 2.58 -538.67 -1.39 -11.25 16 8 C 0.26 6.46 4.69 170.81 0.80 7.27 16 9 N -0.56 -19.40 4.23 -908.68 -3.85 -23.25 16 10 C 0.07 1.90 5.34 86.33 0.46 2.36 16 11 C -0.11 -4.10 6.09 30.65 0.19 -3.91 16 12 C -0.10 -4.79 5.02 30.67 0.15 -4.64 16 13 C 0.06 2.97 2.26 -11.49 -0.03 2.94 16 14 H -0.02 -1.51 8.14 -2.39 -0.02 -1.53 16 15 C -0.53 -30.74 8.56 25.60 0.22 -30.52 16 16 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 17 C 0.01 0.65 5.30 84.66 0.45 1.10 16 18 N -0.92 -55.95 11.35 21.45 0.24 -55.71 16 19 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 20 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 C 0.10 4.40 4.65 86.33 0.40 4.81 16 24 C 0.16 1.49 9.30 83.53 0.78 2.27 16 25 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.09 -0.42 8.09 -2.39 -0.02 -0.44 16 27 H 0.09 -0.35 8.10 -2.39 -0.02 -0.37 16 28 H 0.22 0.92 8.06 -2.91 -0.02 0.90 16 29 H 0.13 1.79 7.70 -2.39 -0.02 1.77 16 30 H 0.10 3.09 6.98 -2.39 -0.02 3.07 16 31 H 0.08 1.75 7.15 -2.39 -0.02 1.73 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.05 2.94 6.15 -2.39 -0.01 2.93 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 2.19 7.93 -2.38 -0.02 2.17 16 40 H 0.23 -0.30 7.93 -2.91 -0.02 -0.32 16 Total: -1.00 -94.24 334.95 0.70 -93.54 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: 1.02 Total: -1.20 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.32 Total: 2.21 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -7.05 Total: -107.12 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: -33.33 SS G_CDS: -1.62 Total: -34.95 kcal Total: -94.24 0.70 -93.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.640 kcal (2) G-P(sol) polarization free energy of solvation -94.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds