Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00209 * 2 1 4 4 H 1.48505 * 109.47030 * 270.00249 * 3 2 1 5 5 H 1.48495 * 109.47347 * 30.00093 * 3 2 1 6 6 H 1.48503 * 109.47092 * 150.00508 * 3 2 1 7 7 C 1.37881 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99862 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00155 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47301 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47064 * 180.02562 * 11 10 9 13 13 C 1.50709 * 109.46746 * 179.97438 * 12 11 10 14 14 O 1.20823 * 119.99822 * 0.02562 * 13 12 11 15 15 O 1.34227 * 119.99644 * 179.97438 * 13 12 11 16 16 C 1.45199 * 117.00038 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47576 * 180.02562 * 16 15 13 18 18 C 1.34322 * 126.44113 * 89.97185 * 17 16 15 19 19 N 1.34485 * 107.66970 * 180.02562 * 18 17 16 20 20 C 1.30258 * 108.69703 * 359.97438 * 19 18 17 21 21 C 1.50697 * 125.61890 * 179.97438 * 20 19 18 22 22 C 1.53002 * 117.49992 * 351.28003 * 21 20 19 23 23 C 1.53000 * 117.50034 * 59.93776 * 21 20 19 24 24 O 1.33969 * 108.75843 * 0.22867 * 20 19 18 25 25 H 0.97008 * 119.99604 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46914 * 60.00158 * 9 7 2 27 27 H 1.09003 * 109.46954 * 299.99918 * 9 7 2 28 28 H 1.09005 * 109.47200 * 59.99830 * 10 9 7 29 29 H 1.08996 * 109.47302 * 300.00342 * 10 9 7 30 30 H 1.08991 * 109.47236 * 59.99678 * 11 10 9 31 31 H 1.09003 * 109.46889 * 299.99764 * 11 10 9 32 32 H 1.08997 * 109.47347 * 60.00168 * 12 11 10 33 33 H 1.08994 * 109.47243 * 299.99683 * 12 11 10 34 34 H 1.09004 * 109.47135 * 60.00050 * 16 15 13 35 35 H 1.09008 * 109.46947 * 300.00619 * 16 15 13 36 36 H 1.08000 * 126.17279 * 0.05761 * 18 17 16 37 37 H 1.09002 * 115.54932 * 205.60840 * 21 20 19 38 38 H 1.09000 * 117.49996 * 215.00670 * 22 21 20 39 39 H 1.08999 * 117.49664 * 0.02562 * 22 21 20 40 40 H 1.09008 * 117.49673 * 359.97438 * 23 21 20 41 41 H 1.08999 * 117.49942 * 144.97208 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 6 5.5514 -2.6367 -0.0022 12 6 6.0614 -4.0793 -0.0040 13 6 7.5684 -4.0793 -0.0046 14 8 8.1725 -3.0329 -0.0032 15 8 8.2395 -5.2418 -0.0057 16 6 9.6895 -5.1659 -0.0056 17 6 10.2655 -6.5584 -0.0075 18 6 10.5700 -7.2945 -1.0890 19 7 11.0563 -8.4718 -0.6579 20 6 11.0565 -8.4717 0.6447 21 6 11.5238 -9.6041 1.5224 22 6 11.8504 -10.9357 0.8435 23 6 12.9796 -10.0531 1.3811 24 8 10.5676 -7.3011 1.0755 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6806 0.8888 27 1 3.8745 -0.6801 -0.8912 28 1 3.6577 -3.1499 -0.8925 29 1 3.6584 -3.1510 0.8874 30 1 5.9148 -2.1236 0.8881 31 1 5.9148 -2.1222 -0.8918 32 1 5.6981 -4.5920 -0.8947 33 1 5.6980 -4.5942 0.8852 34 1 10.0255 -4.6345 0.8849 35 1 10.0255 -4.6328 -0.8951 36 1 10.4469 -6.9947 -2.1193 37 1 11.0797 -9.6419 2.5172 38 1 11.6212 -11.8496 1.3915 39 1 11.7277 -10.9926 -0.2381 40 1 13.5993 -9.5296 0.6529 41 1 13.4934 -10.3859 2.2829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861378443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = -75.633645 kcal Electronic energy + Delta-G solvation = -21637.912045 eV Core-core repulsion = 18098.331790 eV Total energy + Delta-G solvation = -3539.580255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.54399 -41.62785 -38.33986 -37.94432 -36.67000 -35.82164 -34.65471 -32.87244 -31.89904 -28.56205 -27.41731 -25.05095 -24.22166 -23.36508 -22.90671 -21.97101 -21.65177 -21.53142 -18.97004 -18.72778 -18.60890 -17.84188 -17.68423 -17.56666 -16.39382 -16.29670 -16.05481 -15.69019 -15.38556 -14.88592 -14.77526 -14.30348 -13.96204 -13.81389 -13.69996 -13.42197 -13.30645 -12.87834 -12.69159 -12.43457 -12.37086 -12.13861 -12.04882 -11.89649 -11.78126 -11.74987 -11.67587 -11.54292 -11.39413 -11.33576 -11.24534 -10.75228 -9.86614 -8.28818 -6.32193 0.00070 1.10546 1.18322 1.35919 1.37571 1.41711 1.49938 1.90091 2.36667 2.76605 2.92645 3.06765 3.43664 3.68298 3.69798 3.78213 3.88661 3.94691 3.98288 4.08980 4.11094 4.17715 4.50485 4.55059 4.59898 4.74039 4.74644 4.77366 4.81162 4.90359 5.02135 5.10249 5.13703 5.17968 5.19021 5.23346 5.31011 5.60086 5.65489 5.69144 6.30207 6.51767 6.62526 6.76362 7.32652 8.87776 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.046624 B = 0.001924 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.406764 B =14550.150554 C =14823.788813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.096 4.096 11 C -0.101 4.101 12 C -0.106 4.106 13 C 0.473 3.527 14 O -0.533 6.533 15 O -0.359 6.359 16 C 0.154 3.846 17 C -0.075 4.075 18 C -0.004 4.004 19 N -0.507 5.507 20 C 0.233 3.767 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.142 4.142 24 O -0.207 6.207 25 H 0.266 0.734 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.212 0.788 37 H 0.152 0.848 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.109 -20.998 1.879 35.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.055 4.055 10 C -0.133 4.133 11 C -0.139 4.139 12 C -0.143 4.143 13 C 0.318 3.682 14 O -0.422 6.422 15 O -0.277 6.277 16 C 0.081 3.919 17 C -0.127 4.127 18 C -0.142 4.142 19 N -0.236 5.236 20 C 0.027 3.973 21 C -0.125 4.125 22 C -0.175 4.175 23 C -0.180 4.180 24 O -0.094 6.094 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.145 0.855 36 H 0.229 0.771 37 H 0.170 0.830 38 H 0.151 0.849 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 29.380 -21.078 1.558 36.192 hybrid contribution -0.540 1.713 0.287 1.819 sum 28.840 -19.365 1.845 34.787 Atomic orbital electron populations 1.70072 1.08215 1.28066 1.52877 1.26023 0.95620 1.03500 0.94283 0.85671 0.79438 0.78449 0.79176 1.19207 1.20945 1.17296 1.21567 0.92272 0.93177 1.50012 0.94599 1.19575 0.93760 0.95753 0.96367 1.21336 0.93382 0.96959 1.01649 1.21399 0.95188 0.94559 1.02773 1.21533 0.84793 1.00052 1.07942 1.24251 0.92387 0.80659 0.70939 1.90680 1.71070 1.33799 1.46607 1.86583 1.21398 1.35479 1.84230 1.21119 0.76802 0.87880 1.06134 1.22900 1.08366 0.96552 0.84850 1.23635 1.00077 0.89040 1.01498 1.70480 1.20896 1.22701 1.09548 1.25976 0.95598 0.85716 0.89975 1.20482 1.02629 0.90346 0.99040 1.23202 1.00453 0.92252 1.01630 1.23249 0.88654 1.01512 1.04582 1.84362 1.62430 1.25643 1.37007 0.92564 0.96533 0.96553 0.92198 0.92370 0.92133 0.91837 0.85366 0.85732 0.89012 0.85509 0.77131 0.83045 0.84878 0.88567 0.89063 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 2 C 0.00 0.14 5.47 84.66 0.46 0.60 16 3 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 7 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 8 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 9 C -0.02 -0.80 4.04 29.84 0.12 -0.68 16 10 C -0.10 -3.50 5.15 30.59 0.16 -3.34 16 11 C -0.10 -2.99 4.50 30.60 0.14 -2.85 16 12 C -0.11 -2.33 5.81 29.85 0.17 -2.15 16 13 C 0.47 11.38 7.96 71.24 0.57 11.95 16 14 O -0.53 -15.77 15.73 21.97 0.35 -15.42 16 15 O -0.36 -7.84 10.20 -51.39 -0.52 -8.37 16 16 C 0.15 2.81 6.01 71.24 0.43 3.24 16 17 C -0.07 -1.48 7.03 24.79 0.17 -1.30 16 18 C 0.00 -0.07 11.80 83.39 0.98 0.92 16 19 N -0.51 -10.63 10.84 -303.83 -3.29 -13.93 16 20 C 0.23 4.48 7.89 88.34 0.70 5.18 16 21 C -0.11 -1.22 6.33 -11.54 -0.07 -1.29 16 22 C -0.14 -1.14 10.14 30.62 0.31 -0.83 16 23 C -0.14 -1.07 10.24 30.62 0.31 -0.75 16 24 O -0.21 -4.50 10.77 -3.67 -0.04 -4.54 16 25 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 26 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 27 H 0.02 0.74 7.57 -2.39 -0.02 0.73 16 28 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 31 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 32 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.09 1.65 8.13 -2.38 -0.02 1.63 16 35 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.13 0.44 8.14 -2.39 -0.02 0.43 16 39 H 0.10 1.13 7.88 -2.39 -0.02 1.11 16 40 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -74.94 356.37 4.33 -70.61 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.96 Total: 6.63 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 4.70 Total: -22.03 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -3.00 Total: -73.92 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.22 Total: -28.33 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -74.94 4.33 -70.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861378443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.027 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds