Wall clock time and date at job start Tue Mar 31 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47302 * 2 1 4 4 C 1.52996 * 109.47053 * 120.00306 * 2 1 3 5 5 H 1.09001 * 109.47122 * 305.45728 * 4 2 1 6 6 C 1.53003 * 109.47403 * 65.45424 * 4 2 1 7 7 O 1.42897 * 109.47120 * 54.69429 * 6 4 2 8 8 O 1.42895 * 109.47496 * 185.45632 * 4 2 1 9 9 N 1.41597 * 114.00399 * 154.99716 * 8 4 2 10 10 C 1.34777 * 120.00153 * 179.97438 * 9 8 4 11 11 O 1.21612 * 120.00088 * 0.02562 * 10 9 8 12 12 C 1.47432 * 120.00385 * 180.02562 * 10 9 8 13 13 C 1.39228 * 120.28024 * 5.72316 * 12 10 9 14 14 C 1.38216 * 120.09486 * 180.02562 * 13 12 10 15 15 C 1.38826 * 120.67251 * 359.97438 * 14 13 12 16 16 C 1.37598 * 120.57443 * 0.02562 * 15 14 13 17 17 C 1.40710 * 119.87950 * 359.97438 * 16 15 14 18 18 C 1.40884 * 120.32898 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00743 * 213.99112 * 18 17 16 20 20 C 1.40280 * 119.99840 * 33.99028 * 18 17 16 21 21 N 1.30624 * 119.99888 * 8.69957 * 20 18 17 22 22 Si 1.86801 * 120.00082 * 188.69681 * 20 18 17 23 23 H 1.48502 * 109.47139 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47195 * 119.99749 * 22 20 18 25 25 H 1.48499 * 109.47117 * 240.00275 * 22 20 18 26 26 H 1.09006 * 109.47149 * 60.00068 * 1 2 3 27 27 H 1.09005 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47549 * 299.99952 * 1 2 3 29 29 H 1.08999 * 109.47079 * 240.00127 * 2 1 3 30 30 H 1.08995 * 109.47385 * 185.07542 * 3 2 1 31 31 H 1.09001 * 109.47217 * 305.07990 * 3 2 1 32 32 H 1.09001 * 109.46921 * 65.07269 * 3 2 1 33 33 H 1.08999 * 109.47381 * 174.69433 * 6 4 2 34 34 H 1.09002 * 109.47135 * 294.69483 * 6 4 2 35 35 H 0.96702 * 114.00087 * 180.02562 * 7 6 4 36 36 H 0.96997 * 120.00496 * 0.02562 * 9 8 4 37 37 H 1.07997 * 119.95310 * 0.02562 * 13 12 10 38 38 H 1.07997 * 119.66249 * 180.27635 * 14 13 12 39 39 H 1.08007 * 119.71721 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.06171 * 179.97438 * 16 15 14 41 41 H 0.97002 * 119.99986 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5990 -0.2670 2.1365 6 6 1.6450 -2.1980 1.1825 7 8 2.1186 -2.7629 -0.0417 8 8 3.4631 -0.6114 1.3151 9 7 3.9894 -0.7226 2.6249 10 6 5.3193 -0.6370 2.8264 11 8 6.0673 -0.4638 1.8833 12 6 5.8673 -0.7533 4.1901 13 6 5.0317 -1.0696 5.2579 14 6 5.5495 -1.1771 6.5349 15 6 6.9024 -0.9730 6.7701 16 6 7.7531 -0.6592 5.7351 17 6 7.2513 -0.5437 4.4256 18 6 8.1140 -0.2233 3.3589 19 1 7.7560 0.3788 2.5369 20 6 9.4381 -0.6865 3.3643 21 7 9.8241 -1.5505 4.2647 22 14 10.6493 -0.0676 2.0839 23 1 9.9682 0.8975 1.1839 24 1 11.7862 0.6050 2.7623 25 1 11.1561 -1.2137 1.2872 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1262 1.4438 -0.0909 31 1 1.6043 1.9819 -0.8410 32 1 1.7527 1.9293 0.9320 33 1 2.0878 -2.7309 2.0239 34 1 0.5595 -2.2861 1.2273 35 1 1.9032 -3.6991 -0.1521 36 1 3.3929 -0.8611 3.3772 37 1 3.9775 -1.2311 5.0882 38 1 4.8958 -1.4272 7.3574 39 1 7.2906 -1.0614 7.7741 40 1 8.8041 -0.5018 5.9275 41 1 10.7398 -1.8705 4.2686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868726027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:37 Heat of formation + Delta-G solvation = -68.367015 kcal Electronic energy + Delta-G solvation = -23695.394616 eV Core-core repulsion = 20156.129466 eV Total energy + Delta-G solvation = -3539.265150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.09838 -38.32167 -36.69995 -35.82632 -34.72973 -33.75016 -31.52229 -29.89851 -29.26479 -28.50920 -26.96570 -25.40797 -23.25176 -22.29500 -20.94342 -20.42531 -19.28009 -18.15773 -17.44606 -16.93995 -16.12306 -15.66138 -15.27447 -15.12692 -14.46359 -14.19077 -14.02337 -13.60010 -13.54820 -13.11223 -12.87883 -12.75091 -12.70320 -12.34463 -12.22147 -12.09900 -11.65571 -11.38122 -11.13107 -11.12476 -11.02197 -10.71238 -10.66378 -10.53007 -10.28387 -10.07053 -10.05615 -9.71877 -9.29272 -8.44731 -8.13812 -7.63938 -7.39778 -6.81631 -4.41417 2.32409 2.55632 2.77862 3.12657 3.21689 3.24157 3.99686 4.15897 4.18142 4.58732 4.66188 4.69843 4.74579 5.00383 5.18227 5.24629 5.30124 5.54741 5.55937 5.58712 5.72928 5.77083 5.86096 5.91302 5.97339 6.01459 6.24303 6.32726 6.39952 6.52373 6.90331 7.06694 7.17827 7.40382 7.51075 7.56284 7.59856 7.82671 7.93086 8.13875 8.28935 8.64483 8.78821 8.86605 9.45067 10.13209 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.004434 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.616110 B = 6313.090487 C = 7288.033855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.147 4.147 4 C 0.068 3.932 5 H 0.081 0.919 6 C 0.052 3.948 7 O -0.557 6.557 8 O -0.131 6.131 9 N -0.616 5.616 10 C 0.576 3.424 11 O -0.517 6.517 12 C -0.253 4.253 13 C -0.059 4.059 14 C -0.244 4.244 15 C -0.095 4.095 16 C -0.144 4.144 17 C 0.147 3.853 18 C -0.414 4.414 19 H 0.107 0.893 20 C 0.070 3.930 21 N -0.790 5.790 22 Si 0.917 3.083 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.273 1.273 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.375 0.625 36 H 0.394 0.606 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.822 0.139 -2.550 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.204 4.204 4 C 0.009 3.991 5 H 0.099 0.901 6 C -0.027 4.027 7 O -0.361 6.361 8 O -0.133 6.133 9 N -0.323 5.323 10 C 0.370 3.630 11 O -0.392 6.392 12 C -0.258 4.258 13 C -0.078 4.078 14 C -0.263 4.263 15 C -0.114 4.114 16 C -0.163 4.163 17 C 0.143 3.857 18 C -0.442 4.442 19 H 0.125 0.875 20 C -0.149 4.149 21 N -0.415 5.415 22 Si 0.742 3.258 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.198 1.198 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.221 0.779 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.697 0.779 -3.460 14.148 hybrid contribution -0.384 -0.783 0.159 0.886 sum -14.080 -0.004 -3.301 14.462 Atomic orbital electron populations 1.21850 0.94351 1.01800 1.02081 1.21034 0.95193 0.96499 0.97641 1.21795 1.02589 0.94780 1.01260 1.22672 0.83318 0.93531 0.99606 0.90103 1.22798 0.97357 0.95047 0.87450 1.86576 1.81677 1.28893 1.38959 1.90659 1.18711 1.94985 1.08987 1.48072 1.06887 1.80288 0.97054 1.18537 0.78261 0.76142 0.90027 1.90703 1.56364 1.48622 1.43496 1.19177 0.95908 1.21561 0.89173 1.20624 0.96158 0.97868 0.93141 1.20263 0.95402 1.15120 0.95560 1.20810 0.93635 0.99378 0.97588 1.21368 0.99263 1.04048 0.91646 1.17430 0.89331 0.86171 0.92812 1.20277 0.93362 1.25284 1.05252 0.87512 1.26136 0.99056 0.93327 0.96381 1.69714 1.18941 1.21814 1.31081 0.86086 0.79192 0.79886 0.80682 1.17895 1.19832 1.19809 0.91986 0.92508 0.92679 0.89158 0.91362 0.92735 0.92970 0.93281 0.92881 0.77895 0.76644 0.89479 0.88991 0.88944 0.86213 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.96 37.16 0.33 -0.93 16 2 C -0.08 -1.01 2.58 -90.63 -0.23 -1.25 16 3 C -0.15 -1.83 8.90 37.15 0.33 -1.50 16 4 C 0.07 0.91 2.22 -26.73 -0.06 0.85 16 5 H 0.08 0.92 7.94 -51.93 -0.41 0.50 16 6 C 0.05 0.60 6.55 37.16 0.24 0.85 16 7 O -0.56 -7.19 12.64 -39.77 -0.50 -7.70 16 8 O -0.13 -2.48 9.92 -34.67 -0.34 -2.83 16 9 N -0.62 -12.01 6.32 30.44 0.19 -11.82 16 10 C 0.58 14.09 7.86 -12.52 -0.10 14.00 16 11 O -0.52 -14.71 13.99 -12.88 -0.18 -14.89 16 12 C -0.25 -6.20 5.92 -104.37 -0.62 -6.82 16 13 C -0.06 -1.23 9.52 -39.22 -0.37 -1.61 16 14 C -0.24 -5.05 10.03 -39.37 -0.39 -5.44 16 15 C -0.10 -2.10 10.01 -39.60 -0.40 -2.50 16 16 C -0.14 -3.61 8.62 -38.88 -0.34 -3.95 16 17 C 0.15 3.94 5.51 -106.54 -0.59 3.35 16 18 C -0.41 -11.50 7.69 -37.81 -0.29 -11.79 16 19 H 0.11 3.11 5.90 -52.49 -0.31 2.80 16 20 C 0.07 1.80 5.26 -17.30 -0.09 1.71 16 21 N -0.79 -20.46 11.10 55.56 0.62 -19.84 16 22 Si 0.92 19.93 29.57 -169.99 -5.03 14.90 16 23 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 1.24 7.37 -51.93 -0.38 0.86 16 30 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.46 6.84 -51.93 -0.36 0.10 16 35 H 0.37 3.05 9.12 45.56 0.42 3.47 16 36 H 0.39 6.22 6.49 -40.82 -0.26 5.96 16 37 H 0.09 1.47 6.44 -52.49 -0.34 1.13 16 38 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.12 3.06 6.56 -52.49 -0.34 2.71 16 41 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -32.79 340.73 -7.52 -40.31 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -4.83 Total: 11.74 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.57 Total: -15.02 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.81 Total: -31.66 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.03 Total: -25.41 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.79 -7.52 -40.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868726027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.056 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds