Wall clock time and date at job start Tue Mar 31 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47302 * 2 1 4 4 C 1.52996 * 109.47053 * 120.00306 * 2 1 3 5 5 H 1.09001 * 109.47122 * 305.45728 * 4 2 1 6 6 C 1.53003 * 109.47403 * 65.45424 * 4 2 1 7 7 O 1.42897 * 109.47120 * 54.69429 * 6 4 2 8 8 O 1.42895 * 109.47496 * 185.45632 * 4 2 1 9 9 N 1.41597 * 114.00399 * 154.99716 * 8 4 2 10 10 C 1.34777 * 120.00153 * 179.97438 * 9 8 4 11 11 O 1.21612 * 120.00088 * 0.02562 * 10 9 8 12 12 C 1.47432 * 120.00385 * 180.02562 * 10 9 8 13 13 C 1.39228 * 120.28024 * 5.72316 * 12 10 9 14 14 C 1.38216 * 120.09486 * 180.02562 * 13 12 10 15 15 C 1.38826 * 120.67251 * 359.97438 * 14 13 12 16 16 C 1.37598 * 120.57443 * 0.02562 * 15 14 13 17 17 C 1.40710 * 119.87950 * 359.97438 * 16 15 14 18 18 C 1.40884 * 120.32898 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00743 * 213.99112 * 18 17 16 20 20 C 1.40280 * 119.99840 * 33.99028 * 18 17 16 21 21 N 1.30624 * 119.99888 * 8.69957 * 20 18 17 22 22 Si 1.86801 * 120.00082 * 188.69681 * 20 18 17 23 23 H 1.48502 * 109.47139 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47195 * 119.99749 * 22 20 18 25 25 H 1.48499 * 109.47117 * 240.00275 * 22 20 18 26 26 H 1.09006 * 109.47149 * 60.00068 * 1 2 3 27 27 H 1.09005 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47549 * 299.99952 * 1 2 3 29 29 H 1.08999 * 109.47079 * 240.00127 * 2 1 3 30 30 H 1.08995 * 109.47385 * 185.07542 * 3 2 1 31 31 H 1.09001 * 109.47217 * 305.07990 * 3 2 1 32 32 H 1.09001 * 109.46921 * 65.07269 * 3 2 1 33 33 H 1.08999 * 109.47381 * 174.69433 * 6 4 2 34 34 H 1.09002 * 109.47135 * 294.69483 * 6 4 2 35 35 H 0.96702 * 114.00087 * 180.02562 * 7 6 4 36 36 H 0.96997 * 120.00496 * 0.02562 * 9 8 4 37 37 H 1.07997 * 119.95310 * 0.02562 * 13 12 10 38 38 H 1.07997 * 119.66249 * 180.27635 * 14 13 12 39 39 H 1.08007 * 119.71721 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.06171 * 179.97438 * 16 15 14 41 41 H 0.97002 * 119.99986 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5990 -0.2670 2.1365 6 6 1.6450 -2.1980 1.1825 7 8 2.1186 -2.7629 -0.0417 8 8 3.4631 -0.6114 1.3151 9 7 3.9894 -0.7226 2.6249 10 6 5.3193 -0.6370 2.8264 11 8 6.0673 -0.4638 1.8833 12 6 5.8673 -0.7533 4.1901 13 6 5.0317 -1.0696 5.2579 14 6 5.5495 -1.1771 6.5349 15 6 6.9024 -0.9730 6.7701 16 6 7.7531 -0.6592 5.7351 17 6 7.2513 -0.5437 4.4256 18 6 8.1140 -0.2233 3.3589 19 1 7.7560 0.3788 2.5369 20 6 9.4381 -0.6865 3.3643 21 7 9.8241 -1.5505 4.2647 22 14 10.6493 -0.0676 2.0839 23 1 9.9682 0.8975 1.1839 24 1 11.7862 0.6050 2.7623 25 1 11.1561 -1.2137 1.2872 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1262 1.4438 -0.0909 31 1 1.6043 1.9819 -0.8410 32 1 1.7527 1.9293 0.9320 33 1 2.0878 -2.7309 2.0239 34 1 0.5595 -2.2861 1.2273 35 1 1.9032 -3.6991 -0.1521 36 1 3.3929 -0.8611 3.3772 37 1 3.9775 -1.2311 5.0882 38 1 4.8958 -1.4272 7.3574 39 1 7.2906 -1.0614 7.7741 40 1 8.8041 -0.5018 5.9275 41 1 10.7398 -1.8705 4.2686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868726027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:37 Heat of formation + Delta-G solvation = -91.092097 kcal Electronic energy + Delta-G solvation = -23696.380049 eV Core-core repulsion = 20156.129466 eV Total energy + Delta-G solvation = -3540.250583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69908 -39.70065 -38.41722 -37.06643 -35.93568 -35.56778 -33.21811 -31.73901 -30.86208 -29.65526 -27.83504 -27.27527 -24.46156 -23.88539 -22.74801 -21.73317 -20.76607 -19.67625 -18.97788 -18.17197 -17.79007 -17.12086 -16.81057 -16.25740 -15.94496 -15.84381 -15.63502 -15.12200 -14.86527 -14.52618 -14.48859 -14.23988 -13.89443 -13.63153 -13.42777 -13.20994 -12.98270 -12.89712 -12.86583 -12.57865 -12.47823 -12.32775 -12.05431 -11.90841 -11.64879 -11.51735 -11.36275 -11.15800 -10.94723 -10.36004 -9.79077 -9.40836 -9.25202 -8.69609 -6.38916 0.48365 0.99949 1.07914 1.32786 1.46882 1.48884 2.21458 2.32218 2.76475 3.28701 3.58082 3.63955 3.69851 3.81584 4.09915 4.21013 4.31311 4.32213 4.38867 4.47064 4.55656 4.59331 4.77150 4.77549 4.86296 4.95820 4.99817 5.08022 5.19950 5.22891 5.31469 5.38441 5.41421 5.58331 5.79294 5.99741 6.02407 6.09607 6.33165 6.59568 6.72047 6.86838 6.87737 6.96933 7.66763 8.27606 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.004434 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.616110 B = 6313.090487 C = 7288.033855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.146 4.146 4 C 0.052 3.948 5 H 0.108 0.892 6 C 0.052 3.948 7 O -0.585 6.585 8 O -0.161 6.161 9 N -0.595 5.595 10 C 0.570 3.430 11 O -0.571 6.571 12 C -0.271 4.271 13 C -0.054 4.054 14 C -0.230 4.230 15 C -0.089 4.089 16 C -0.173 4.173 17 C 0.118 3.882 18 C -0.458 4.458 19 H 0.077 0.923 20 C 0.034 3.966 21 N -0.818 5.818 22 Si 0.976 3.024 23 H -0.274 1.274 24 H -0.249 1.249 25 H -0.267 1.267 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.393 0.607 36 H 0.413 0.587 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.987 -0.486 -0.986 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.203 4.203 4 C -0.006 4.006 5 H 0.125 0.875 6 C -0.026 4.026 7 O -0.393 6.393 8 O -0.165 6.165 9 N -0.301 5.301 10 C 0.365 3.635 11 O -0.450 6.450 12 C -0.276 4.276 13 C -0.073 4.073 14 C -0.249 4.249 15 C -0.107 4.107 16 C -0.192 4.192 17 C 0.114 3.886 18 C -0.487 4.487 19 H 0.095 0.905 20 C -0.181 4.181 21 N -0.445 5.445 22 Si 0.798 3.202 23 H -0.198 1.198 24 H -0.173 1.173 25 H -0.192 1.192 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.243 0.757 36 H 0.257 0.743 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.121 0.879 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.929 0.127 -1.850 17.031 hybrid contribution 0.299 -0.622 -0.258 0.737 sum -16.630 -0.495 -2.108 16.771 Atomic orbital electron populations 1.21808 0.91084 1.02981 1.03364 1.21049 0.97630 0.95343 0.96027 1.21781 1.00055 0.95879 1.02579 1.23201 0.80441 0.95640 1.01304 0.87453 1.22855 0.99552 0.93358 0.86789 1.86535 1.82350 1.30723 1.39654 1.90678 1.22532 1.95317 1.07989 1.47476 1.05912 1.78178 0.98504 1.18635 0.79483 0.75761 0.89648 1.90676 1.58279 1.51066 1.45019 1.19478 0.95908 1.21729 0.90515 1.21063 0.98057 0.95979 0.92175 1.20822 0.95223 1.12173 0.96683 1.21227 0.94201 0.97151 0.98159 1.21304 0.99281 1.06591 0.92036 1.17799 0.90703 0.86737 0.93386 1.20180 0.95207 1.27779 1.05562 0.90478 1.26740 0.99903 0.93251 0.98209 1.69720 1.19709 1.22636 1.32389 0.85249 0.77562 0.79130 0.78293 1.19813 1.17311 1.19157 0.91038 0.91357 0.91114 0.91522 0.95355 0.90888 0.92038 0.93714 0.88918 0.75727 0.74329 0.84806 0.84400 0.85821 0.87858 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.96 71.98 0.64 -1.26 16 2 C -0.08 -1.83 2.58 -10.80 -0.03 -1.85 16 3 C -0.15 -3.55 8.90 71.98 0.64 -2.91 16 4 C 0.05 1.30 2.22 30.59 0.07 1.36 16 5 H 0.11 2.06 7.94 -2.39 -0.02 2.05 16 6 C 0.05 1.08 6.55 71.98 0.47 1.55 16 7 O -0.58 -14.36 12.64 -144.64 -1.83 -16.19 16 8 O -0.16 -6.14 9.92 -16.59 -0.16 -6.31 16 9 N -0.60 -22.84 6.32 -175.87 -1.11 -23.95 16 10 C 0.57 28.70 7.86 86.67 0.68 29.38 16 11 O -0.57 -34.57 13.99 13.28 0.19 -34.38 16 12 C -0.27 -13.40 5.92 -19.70 -0.12 -13.52 16 13 C -0.05 -2.10 9.52 22.50 0.21 -1.89 16 14 C -0.23 -8.54 10.03 22.41 0.22 -8.32 16 15 C -0.09 -3.72 10.01 22.26 0.22 -3.50 16 16 C -0.17 -8.81 8.62 22.72 0.20 -8.62 16 17 C 0.12 6.56 5.51 -21.11 -0.12 6.44 16 18 C -0.46 -27.23 7.69 23.41 0.18 -27.05 16 19 H 0.08 4.91 5.90 -2.91 -0.02 4.89 16 20 C 0.03 1.86 5.26 85.37 0.45 2.31 16 21 N -0.82 -44.10 11.10 21.88 0.24 -43.86 16 22 Si 0.98 43.06 29.57 68.60 2.03 45.09 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.07 0.82 6.70 -2.38 -0.02 0.81 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.83 7.37 -2.39 -0.02 1.81 16 30 H 0.03 0.89 7.72 -2.39 -0.02 0.88 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.18 6.84 -2.39 -0.02 1.17 16 35 H 0.39 5.80 9.12 -74.06 -0.68 5.13 16 36 H 0.41 11.98 6.49 -92.71 -0.60 11.38 16 37 H 0.13 3.84 6.44 -2.91 -0.02 3.82 16 38 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.10 5.50 6.56 -2.91 -0.02 5.48 16 41 H 0.29 14.05 8.29 -92.71 -0.77 13.28 16 Total: -1.00 -77.84 340.73 2.87 -74.96 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -0.21 Total: 32.50 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 3.73 Total: -27.86 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -0.87 Total: -67.81 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -1.81 Total: -56.88 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -77.84 2.87 -74.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868726027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.128 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds