Wall clock time and date at job start Tue Mar 31 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 C 1.53000 * 109.47058 * 119.99484 * 2 1 3 5 5 H 1.08999 * 109.47178 * 300.00233 * 4 2 1 6 6 C 1.52998 * 109.47445 * 179.97438 * 4 2 1 7 7 O 1.42903 * 109.47259 * 305.00412 * 6 4 2 8 8 O 1.42910 * 109.46983 * 60.00008 * 4 2 1 9 9 N 1.41598 * 113.99893 * 204.99829 * 8 4 2 10 10 C 1.34776 * 119.99669 * 179.97438 * 9 8 4 11 11 O 1.21609 * 120.00181 * 0.02562 * 10 9 8 12 12 C 1.47435 * 119.99851 * 180.02562 * 10 9 8 13 13 C 1.39235 * 120.28378 * 356.68142 * 12 10 9 14 14 C 1.38213 * 120.09167 * 180.28304 * 13 12 10 15 15 C 1.38829 * 120.67951 * 359.69388 * 14 13 12 16 16 C 1.37601 * 120.56944 * 0.02562 * 15 14 13 17 17 C 1.40712 * 119.87956 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.32562 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99856 * 145.79790 * 18 17 16 20 20 C 1.40271 * 120.00127 * 325.78891 * 18 17 16 21 21 N 1.30627 * 119.99924 * 340.75177 * 20 18 17 22 22 Si 1.86800 * 119.99870 * 160.74583 * 20 18 17 23 23 H 1.48507 * 109.47164 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47377 * 299.99957 * 22 20 18 25 25 H 1.48501 * 109.47284 * 60.00488 * 22 20 18 26 26 H 1.08994 * 109.46949 * 300.00113 * 1 2 3 27 27 H 1.08996 * 109.46684 * 60.00544 * 1 2 3 28 28 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47317 * 239.99633 * 2 1 3 30 30 H 1.09000 * 109.46984 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46888 * 299.99825 * 3 2 1 32 32 H 1.08999 * 109.47286 * 59.99614 * 3 2 1 33 33 H 1.09006 * 109.46646 * 65.00241 * 6 4 2 34 34 H 1.08999 * 109.47523 * 185.00131 * 6 4 2 35 35 H 0.96695 * 114.00035 * 179.97438 * 7 6 4 36 36 H 0.96994 * 120.00170 * 0.02562 * 9 8 4 37 37 H 1.08001 * 119.94893 * 359.97438 * 13 12 10 38 38 H 1.08002 * 119.66077 * 179.72069 * 14 13 12 39 39 H 1.08002 * 119.72114 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.06577 * 180.02562 * 16 15 14 41 41 H 0.96991 * 120.00035 * 354.82573 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 3.5700 -0.7218 1.2491 7 8 4.0460 -1.2915 0.0280 8 8 1.5636 -2.0685 1.2494 9 7 1.4780 -2.6490 2.5381 10 6 1.0422 -3.9166 2.6785 11 8 0.7231 -4.5620 1.6984 12 6 0.9525 -4.5208 4.0203 13 6 1.3810 -3.8122 5.1396 14 6 1.3005 -4.3847 6.3950 15 6 0.7883 -5.6647 6.5583 16 6 0.3516 -6.3875 5.4719 17 6 0.4236 -5.8281 4.1828 18 6 -0.0203 -6.5600 3.0639 19 1 -0.4843 -6.0485 2.2334 20 6 0.1403 -7.9530 3.0282 21 7 1.0084 -8.5307 3.8151 22 14 -0.8872 -8.9820 1.8557 23 1 -0.5302 -10.4150 2.0117 24 1 -2.3276 -8.7948 2.1650 25 1 -0.6212 -8.5544 0.4587 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.9337 0.3020 1.3384 34 1 3.9333 -1.3111 2.0909 35 1 5.0099 -1.3238 -0.0414 36 1 1.7322 -2.1341 3.3198 37 1 1.7815 -2.8156 5.0260 38 1 1.6391 -3.8304 7.2579 39 1 0.7322 -6.0969 7.5464 40 1 -0.0457 -7.3824 5.6083 41 1 1.5943 -7.9920 4.3693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868726028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:39 Heat of formation + Delta-G solvation = -73.965565 kcal Electronic energy + Delta-G solvation = -23731.171522 eV Core-core repulsion = 20191.663601 eV Total energy + Delta-G solvation = -3539.507921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.17000 -38.43544 -36.86769 -35.86621 -34.78278 -33.99865 -31.58362 -29.76943 -29.26699 -28.56555 -26.99933 -25.24096 -23.32040 -22.44875 -21.00827 -20.45948 -19.41663 -18.39490 -17.75734 -17.07433 -16.22191 -15.73410 -15.18711 -14.81432 -14.52931 -14.15169 -14.14726 -13.82077 -13.61522 -13.35018 -12.95228 -12.78900 -12.66914 -12.34281 -12.25981 -12.14389 -11.86519 -11.45613 -11.14803 -11.13893 -10.95422 -10.78297 -10.71658 -10.35540 -10.32318 -10.20710 -10.08582 -9.65787 -9.09689 -8.55036 -8.20076 -7.85468 -7.65865 -7.18124 -4.50517 2.18909 2.50032 2.69532 3.22123 3.31968 3.42991 4.04176 4.06496 4.13074 4.55535 4.60964 4.65779 4.71111 4.96325 5.15075 5.22448 5.27172 5.41226 5.49886 5.52545 5.68389 5.73321 5.78143 5.82883 5.87908 5.98503 6.09080 6.28491 6.34181 6.38961 6.65385 6.92108 7.20282 7.41401 7.46123 7.54089 7.55663 7.65905 7.83414 8.03316 8.17491 8.25301 8.67099 8.81447 9.38199 10.01182 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.004391 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.655338 B = 6374.637823 C = 7291.315964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.143 4.143 4 C 0.068 3.932 5 H 0.081 0.919 6 C 0.052 3.948 7 O -0.556 6.556 8 O -0.130 6.130 9 N -0.617 5.617 10 C 0.575 3.425 11 O -0.516 6.516 12 C -0.257 4.257 13 C -0.045 4.045 14 C -0.258 4.258 15 C -0.075 4.075 16 C -0.197 4.197 17 C 0.122 3.878 18 C -0.463 4.463 19 H 0.107 0.893 20 C 0.032 3.968 21 N -0.789 5.789 22 Si 1.070 2.930 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.271 1.271 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.375 0.625 36 H 0.393 0.607 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 15.035 -2.001 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.201 4.201 4 C 0.009 3.991 5 H 0.099 0.901 6 C -0.027 4.027 7 O -0.361 6.361 8 O -0.133 6.133 9 N -0.323 5.323 10 C 0.369 3.631 11 O -0.391 6.391 12 C -0.262 4.262 13 C -0.064 4.064 14 C -0.277 4.277 15 C -0.094 4.094 16 C -0.216 4.216 17 C 0.117 3.883 18 C -0.490 4.490 19 H 0.125 0.875 20 C -0.190 4.190 21 N -0.412 5.412 22 Si 0.893 3.107 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.196 1.196 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.221 0.779 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.358 12.791 -3.471 13.462 hybrid contribution 1.434 2.377 1.310 3.070 sum 3.792 15.168 -2.161 15.783 Atomic orbital electron populations 1.21829 0.94443 1.03055 1.01284 1.21016 0.96349 0.95233 0.97674 1.21849 1.01134 0.95045 1.02037 1.22676 0.91839 0.84786 0.99841 0.90108 1.22806 0.95452 0.96920 0.87495 1.86581 1.26199 1.85040 1.38238 1.90664 1.87577 1.25841 1.09228 1.48034 1.73197 1.13823 0.97237 1.18475 0.76448 0.77907 0.90229 1.90704 1.48588 1.59621 1.40215 1.19104 1.17950 1.00084 0.89079 1.20695 0.96356 0.96356 0.92967 1.20222 1.14260 0.97539 0.95716 1.20751 0.97140 0.94336 0.97149 1.21248 1.07424 1.00793 0.92136 1.17436 0.87790 0.90208 0.92889 1.21246 1.30032 0.93920 1.03763 0.87540 1.27302 0.96773 0.96666 0.98258 1.70392 1.12371 1.42209 1.16270 0.83560 0.75839 0.75556 0.75737 1.19875 1.19864 1.19634 0.93010 0.92591 0.91376 0.89175 0.92368 0.91981 0.92729 0.92780 0.93370 0.77888 0.76683 0.89326 0.88765 0.88720 0.87326 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.05 37.16 0.34 -1.47 16 2 C -0.08 -1.00 2.52 -90.62 -0.23 -1.23 16 3 C -0.14 -1.25 8.84 37.16 0.33 -0.93 16 4 C 0.07 0.91 2.22 -26.73 -0.06 0.85 16 5 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 6 C 0.05 0.60 6.42 37.16 0.24 0.84 16 7 O -0.56 -7.18 12.74 -40.12 -0.51 -7.69 16 8 O -0.13 -2.48 10.04 -34.82 -0.35 -2.83 16 9 N -0.62 -12.01 6.32 30.44 0.19 -11.82 16 10 C 0.57 14.09 7.87 -12.52 -0.10 13.99 16 11 O -0.52 -14.75 13.97 -12.88 -0.18 -14.93 16 12 C -0.26 -6.27 5.92 -104.36 -0.62 -6.89 16 13 C -0.04 -0.93 9.53 -39.22 -0.37 -1.30 16 14 C -0.26 -5.25 10.03 -39.37 -0.39 -5.64 16 15 C -0.07 -1.61 10.01 -39.60 -0.40 -2.01 16 16 C -0.20 -4.83 7.87 -38.88 -0.31 -5.14 16 17 C 0.12 3.22 5.17 -106.54 -0.55 2.67 16 18 C -0.46 -12.84 7.65 -37.82 -0.29 -13.13 16 19 H 0.11 3.11 5.92 -52.48 -0.31 2.80 16 20 C 0.03 0.84 5.04 -17.30 -0.09 0.75 16 21 N -0.79 -21.10 12.57 55.56 0.70 -20.40 16 22 Si 1.07 22.74 29.98 -169.99 -5.10 17.65 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 29 H 0.09 1.25 7.56 -51.93 -0.39 0.86 16 30 H 0.06 0.48 6.55 -51.93 -0.34 0.14 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.46 6.71 -51.93 -0.35 0.11 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.37 3.05 9.12 45.56 0.42 3.46 16 36 H 0.39 6.20 6.47 -40.82 -0.26 5.94 16 37 H 0.09 1.48 6.41 -52.49 -0.34 1.14 16 38 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.11 2.71 6.94 -52.49 -0.36 2.34 16 41 H 0.30 8.13 6.55 -40.82 -0.27 7.86 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -32.93 339.77 -7.40 -40.33 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -4.77 Total: 13.19 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.50 Total: -18.63 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.89 Total: -32.22 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.04 Total: -25.45 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.10 Total: 17.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.93 -7.40 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868726028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.631 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds