Wall clock time and date at job start Tue Mar 31 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 C 1.53000 * 109.47058 * 119.99484 * 2 1 3 5 5 H 1.08999 * 109.47178 * 300.00233 * 4 2 1 6 6 C 1.52998 * 109.47445 * 179.97438 * 4 2 1 7 7 O 1.42903 * 109.47259 * 305.00412 * 6 4 2 8 8 O 1.42910 * 109.46983 * 60.00008 * 4 2 1 9 9 N 1.41598 * 113.99893 * 204.99829 * 8 4 2 10 10 C 1.34776 * 119.99669 * 179.97438 * 9 8 4 11 11 O 1.21609 * 120.00181 * 0.02562 * 10 9 8 12 12 C 1.47435 * 119.99851 * 180.02562 * 10 9 8 13 13 C 1.39235 * 120.28378 * 356.68142 * 12 10 9 14 14 C 1.38213 * 120.09167 * 180.28304 * 13 12 10 15 15 C 1.38829 * 120.67951 * 359.69388 * 14 13 12 16 16 C 1.37601 * 120.56944 * 0.02562 * 15 14 13 17 17 C 1.40712 * 119.87956 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.32562 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99856 * 145.79790 * 18 17 16 20 20 C 1.40271 * 120.00127 * 325.78891 * 18 17 16 21 21 N 1.30627 * 119.99924 * 340.75177 * 20 18 17 22 22 Si 1.86800 * 119.99870 * 160.74583 * 20 18 17 23 23 H 1.48507 * 109.47164 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47377 * 299.99957 * 22 20 18 25 25 H 1.48501 * 109.47284 * 60.00488 * 22 20 18 26 26 H 1.08994 * 109.46949 * 300.00113 * 1 2 3 27 27 H 1.08996 * 109.46684 * 60.00544 * 1 2 3 28 28 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47317 * 239.99633 * 2 1 3 30 30 H 1.09000 * 109.46984 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46888 * 299.99825 * 3 2 1 32 32 H 1.08999 * 109.47286 * 59.99614 * 3 2 1 33 33 H 1.09006 * 109.46646 * 65.00241 * 6 4 2 34 34 H 1.08999 * 109.47523 * 185.00131 * 6 4 2 35 35 H 0.96695 * 114.00035 * 179.97438 * 7 6 4 36 36 H 0.96994 * 120.00170 * 0.02562 * 9 8 4 37 37 H 1.08001 * 119.94893 * 359.97438 * 13 12 10 38 38 H 1.08002 * 119.66077 * 179.72069 * 14 13 12 39 39 H 1.08002 * 119.72114 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.06577 * 180.02562 * 16 15 14 41 41 H 0.96991 * 120.00035 * 354.82573 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 3.5700 -0.7218 1.2491 7 8 4.0460 -1.2915 0.0280 8 8 1.5636 -2.0685 1.2494 9 7 1.4780 -2.6490 2.5381 10 6 1.0422 -3.9166 2.6785 11 8 0.7231 -4.5620 1.6984 12 6 0.9525 -4.5208 4.0203 13 6 1.3810 -3.8122 5.1396 14 6 1.3005 -4.3847 6.3950 15 6 0.7883 -5.6647 6.5583 16 6 0.3516 -6.3875 5.4719 17 6 0.4236 -5.8281 4.1828 18 6 -0.0203 -6.5600 3.0639 19 1 -0.4843 -6.0485 2.2334 20 6 0.1403 -7.9530 3.0282 21 7 1.0084 -8.5307 3.8151 22 14 -0.8872 -8.9820 1.8557 23 1 -0.5302 -10.4150 2.0117 24 1 -2.3276 -8.7948 2.1650 25 1 -0.6212 -8.5544 0.4587 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.9337 0.3020 1.3384 34 1 3.9333 -1.3111 2.0909 35 1 5.0099 -1.3238 -0.0414 36 1 1.7322 -2.1341 3.3198 37 1 1.7815 -2.8156 5.0260 38 1 1.6391 -3.8304 7.2579 39 1 0.7322 -6.0969 7.5464 40 1 -0.0457 -7.3824 5.6083 41 1 1.5943 -7.9920 4.3693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868726028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:39 Heat of formation + Delta-G solvation = -96.912706 kcal Electronic energy + Delta-G solvation = -23732.166585 eV Core-core repulsion = 20191.663601 eV Total energy + Delta-G solvation = -3540.502984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80858 -39.79554 -38.59372 -37.11033 -36.03869 -35.74877 -33.29027 -31.56275 -30.92383 -29.68432 -27.85347 -27.11902 -24.58402 -23.98327 -22.81407 -21.81491 -20.87946 -20.07640 -19.18367 -18.23981 -17.88097 -16.90751 -16.58727 -16.28628 -16.05899 -15.87622 -15.67460 -15.51387 -15.01036 -14.58005 -14.44986 -14.27521 -13.95452 -13.73618 -13.56053 -13.21850 -13.01265 -12.97827 -12.75147 -12.55004 -12.51457 -12.09851 -12.02722 -11.96309 -11.68655 -11.51570 -11.38515 -10.98295 -10.97361 -10.46223 -9.87067 -9.62235 -9.52440 -9.13497 -6.49791 0.35471 0.88946 1.01732 1.46090 1.61251 1.76499 2.20748 2.29921 2.71389 3.25152 3.52257 3.53760 3.61071 3.78217 4.06341 4.11557 4.18728 4.28563 4.36342 4.43240 4.44146 4.51987 4.71712 4.75540 4.76128 4.85545 4.93151 4.97267 5.09065 5.18052 5.34909 5.38591 5.38965 5.61377 5.66235 5.84249 5.88700 5.97521 6.19815 6.30903 6.56207 6.78610 6.84716 6.85760 7.59402 8.02128 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.004391 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.655338 B = 6374.637823 C = 7291.315964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.135 4.135 4 C 0.052 3.948 5 H 0.108 0.892 6 C 0.052 3.948 7 O -0.585 6.585 8 O -0.161 6.161 9 N -0.595 5.595 10 C 0.569 3.431 11 O -0.571 6.571 12 C -0.274 4.274 13 C -0.041 4.041 14 C -0.238 4.238 15 C -0.068 4.068 16 C -0.221 4.221 17 C 0.099 3.901 18 C -0.512 4.512 19 H 0.077 0.923 20 C 0.000 4.000 21 N -0.812 5.812 22 Si 1.113 2.887 23 H -0.261 1.261 24 H -0.257 1.257 25 H -0.276 1.276 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.393 0.607 36 H 0.413 0.587 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 18.320 -0.045 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.006 4.006 5 H 0.126 0.874 6 C -0.026 4.026 7 O -0.392 6.392 8 O -0.165 6.165 9 N -0.300 5.300 10 C 0.363 3.637 11 O -0.450 6.450 12 C -0.280 4.280 13 C -0.060 4.060 14 C -0.257 4.257 15 C -0.087 4.087 16 C -0.240 4.240 17 C 0.095 3.905 18 C -0.540 4.540 19 H 0.095 0.905 20 C -0.216 4.216 21 N -0.436 5.436 22 Si 0.931 3.069 23 H -0.184 1.184 24 H -0.181 1.181 25 H -0.202 1.202 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.243 0.757 36 H 0.257 0.743 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.111 0.889 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.497 16.147 -1.467 16.586 hybrid contribution 1.209 1.710 0.818 2.248 sum 4.706 17.857 -0.649 18.478 Atomic orbital electron populations 1.21815 0.94902 1.00893 1.02841 1.21034 0.95970 0.97059 0.95929 1.21808 1.01678 0.92323 1.03414 1.23208 0.93478 0.82308 1.01589 0.87421 1.22868 0.93926 0.98990 0.86799 1.86541 1.28202 1.85500 1.38993 1.90684 1.88363 1.29117 1.08380 1.47438 1.71146 1.12707 0.98720 1.18604 0.76218 0.79053 0.89819 1.90680 1.50973 1.61566 1.41826 1.19431 1.18018 0.99960 0.90575 1.21148 0.94957 0.98084 0.91811 1.20833 1.11065 0.96757 0.97031 1.21205 0.95118 0.94690 0.97661 1.21206 1.09388 1.00889 0.92547 1.17825 0.87732 0.91510 0.93460 1.21139 1.33748 0.94970 1.04102 0.90509 1.28426 0.96835 0.97379 0.98958 1.70496 1.13496 1.41485 1.18121 0.83054 0.75475 0.74795 0.73601 1.18445 1.18138 1.20177 0.91540 0.90983 0.95316 0.91835 0.91430 0.91047 0.90961 0.88795 0.93813 0.75724 0.74333 0.84572 0.84008 0.85326 0.88935 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.05 71.98 0.65 -2.81 16 2 C -0.08 -1.80 2.52 -10.79 -0.03 -1.83 16 3 C -0.14 -1.89 8.84 71.98 0.64 -1.25 16 4 C 0.05 1.29 2.22 30.59 0.07 1.36 16 5 H 0.11 2.05 7.94 -2.39 -0.02 2.03 16 6 C 0.05 1.07 6.42 71.98 0.46 1.53 16 7 O -0.58 -14.35 12.74 -144.30 -1.84 -16.19 16 8 O -0.16 -6.15 10.04 -16.45 -0.17 -6.32 16 9 N -0.59 -22.74 6.32 -175.88 -1.11 -23.85 16 10 C 0.57 28.58 7.87 86.67 0.68 29.26 16 11 O -0.57 -34.69 13.97 13.29 0.19 -34.50 16 12 C -0.27 -13.44 5.92 -19.70 -0.12 -13.56 16 13 C -0.04 -1.57 9.53 22.50 0.21 -1.36 16 14 C -0.24 -8.54 10.03 22.41 0.22 -8.32 16 15 C -0.07 -2.76 10.01 22.26 0.22 -2.54 16 16 C -0.22 -11.01 7.87 22.72 0.18 -10.83 16 17 C 0.10 5.45 5.17 -21.11 -0.11 5.34 16 18 C -0.51 -30.37 7.65 23.41 0.18 -30.19 16 19 H 0.08 4.90 5.92 -2.91 -0.02 4.88 16 20 C 0.00 0.00 5.04 85.37 0.43 0.43 16 21 N -0.81 -45.70 12.57 21.88 0.28 -45.42 16 22 Si 1.11 48.43 29.98 68.60 2.06 50.48 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.03 0.88 7.68 -2.39 -0.02 0.86 16 29 H 0.06 1.77 7.56 -2.39 -0.02 1.75 16 30 H 0.07 0.84 6.55 -2.39 -0.02 0.82 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.19 6.71 -2.38 -0.02 1.17 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.39 5.80 9.12 -74.06 -0.68 5.13 16 36 H 0.41 11.86 6.47 -92.71 -0.60 11.26 16 37 H 0.14 3.79 6.41 -2.91 -0.02 3.77 16 38 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 40 H 0.09 4.82 6.94 -2.91 -0.02 4.80 16 41 H 0.28 16.35 6.55 -92.71 -0.61 15.74 16 Total: -1.00 -78.88 339.77 3.05 -75.83 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.05 Total: 34.74 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.70 Total: -34.78 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -0.84 Total: -69.28 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -1.82 Total: -57.00 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.06 Total: 50.48 kcal Total: -78.88 3.05 -75.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868726028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.084 kcal (2) G-P(sol) polarization free energy of solvation -78.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds