Wall clock time and date at job start Tue Mar 31 2020 06:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38012 * 120.00280 * 2 1 4 4 C 1.38215 * 120.23426 * 180.02562 * 3 2 1 5 5 C 1.39034 * 120.22796 * 359.97438 * 4 3 2 6 6 N 1.39708 * 119.99790 * 180.02562 * 5 4 3 7 7 C 1.38627 * 119.99566 * 359.72814 * 5 4 3 8 8 C 1.50704 * 120.11111 * 180.29715 * 7 5 4 9 9 C 1.39537 * 119.77105 * 0.54915 * 7 5 4 10 10 C 1.47742 * 120.11683 * 179.72680 * 9 7 5 11 11 O 1.21473 * 119.99910 * 269.72559 * 10 9 7 12 12 O 1.34710 * 119.99949 * 89.44503 * 10 9 7 13 13 C 1.45202 * 116.99623 * 180.27328 * 12 10 9 14 14 C 1.53001 * 109.47151 * 180.02562 * 13 12 10 15 15 O 1.42904 * 109.46879 * 65.00398 * 14 13 12 16 16 C 1.42903 * 114.00021 * 180.02562 * 15 14 13 17 17 C 1.50693 * 109.47203 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00149 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00036 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99988 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00033 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47046 * 59.99868 * 21 19 17 23 23 H 1.48494 * 109.47040 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46893 * 299.99690 * 21 19 17 25 25 H 1.08998 * 109.47295 * 269.97820 * 1 2 3 26 26 H 1.09005 * 109.47203 * 29.97322 * 1 2 3 27 27 H 1.08998 * 109.47402 * 149.97076 * 1 2 3 28 28 H 1.07995 * 119.88542 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.88757 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00587 * 0.02562 * 6 5 4 31 31 H 0.96996 * 120.00118 * 179.97438 * 6 5 4 32 32 H 1.08995 * 109.47157 * 270.24906 * 8 7 5 33 33 H 1.09000 * 109.47397 * 30.25296 * 8 7 5 34 34 H 1.09001 * 109.46603 * 150.25182 * 8 7 5 35 35 H 1.08998 * 109.47630 * 300.00514 * 13 12 10 36 36 H 1.09004 * 109.46770 * 60.00918 * 13 12 10 37 37 H 1.09001 * 109.47325 * 185.00659 * 14 13 12 38 38 H 1.09002 * 109.47147 * 305.00626 * 14 13 12 39 39 H 1.09005 * 109.46679 * 300.00171 * 16 15 14 40 40 H 1.09000 * 109.47353 * 59.99602 * 16 15 14 41 41 H 0.96997 * 119.99921 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1952 0.0000 4 6 3.5792 1.2008 -0.0005 5 6 4.2840 0.0023 -0.0005 6 7 5.6811 0.0136 -0.0005 7 6 3.6005 -1.2037 0.0057 8 6 4.3618 -2.5043 0.0125 9 6 2.2051 -1.2093 0.0003 10 6 1.4689 -2.4902 0.0008 11 8 1.1659 -3.0169 -1.0510 12 8 1.1386 -3.0767 1.1677 13 6 0.4210 -4.3368 1.0920 14 6 0.1346 -4.8463 2.5060 15 8 -0.7551 -3.9437 3.1664 16 6 -1.0884 -4.3288 4.5016 17 6 -2.0256 -3.3111 5.0988 18 1 -2.3355 -2.4555 4.5171 19 6 -2.4876 -3.4723 6.3878 20 7 -2.1107 -4.5145 7.0960 21 14 -3.6501 -2.2111 7.1279 22 1 -4.8874 -2.1383 6.3098 23 1 -3.9973 -2.6119 8.5149 24 1 -2.9902 -0.8810 7.1470 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 1.6553 2.1294 0.0004 29 1 4.1136 2.1393 -0.0001 30 1 6.1594 0.8574 -0.0002 31 1 6.1728 -0.8225 -0.0002 32 1 4.5493 -2.8209 -1.0135 33 1 5.3114 -2.3667 0.5295 34 1 3.7753 -3.2659 0.5263 35 1 -0.5199 -4.1880 0.5623 36 1 1.0270 -5.0685 0.5577 37 1 -0.3244 -5.8334 2.4506 38 1 1.0681 -4.9105 3.0651 39 1 -1.5725 -5.3054 4.4878 40 1 -0.1801 -4.3821 5.1019 41 1 -2.4360 -4.6280 8.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873483753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:36 Heat of formation + Delta-G solvation = -119.157481 kcal Electronic energy + Delta-G solvation = -23118.857496 eV Core-core repulsion = 19577.389907 eV Total energy + Delta-G solvation = -3541.467590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71804 -39.26716 -37.00820 -35.94002 -35.34975 -32.92486 -32.72536 -30.97632 -30.07347 -27.84600 -26.88998 -25.87102 -24.19098 -22.43062 -22.02457 -20.82838 -20.54841 -18.07175 -17.61263 -17.02947 -16.39950 -16.30975 -15.55729 -15.35551 -14.91189 -14.71343 -14.46490 -14.22925 -14.14661 -13.65895 -13.42311 -13.25080 -12.81193 -12.74579 -12.55241 -12.27749 -12.07191 -11.96565 -11.59577 -11.41654 -11.33124 -10.92706 -10.84802 -10.75766 -10.50119 -10.36506 -10.30795 -10.03331 -9.12667 -8.92974 -8.85537 -8.19563 -7.60179 -6.10426 -4.12035 0.99268 1.39026 2.20562 2.81499 3.33503 3.35827 3.39949 3.56925 3.66260 4.33725 4.57586 4.64849 4.74467 4.80002 4.86943 5.17396 5.23204 5.26125 5.32636 5.39403 5.44054 5.47474 5.49317 5.63952 5.75452 5.87351 5.90462 5.95304 6.06086 6.10233 6.11656 6.21044 6.44166 6.55632 6.65901 7.06894 7.21484 7.41446 7.49174 7.79204 7.83441 8.14152 8.54216 9.00242 9.52601 11.01162 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003487 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.130891 B = 8028.085709 C = 8628.961958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.077 4.077 4 C -0.172 4.172 5 C 0.208 3.792 6 N -0.878 5.878 7 C -0.121 4.121 8 C -0.113 4.113 9 C -0.057 4.057 10 C 0.518 3.482 11 O -0.506 6.506 12 O -0.331 6.331 13 C 0.071 3.929 14 C 0.062 3.938 15 O -0.390 6.390 16 C 0.195 3.805 17 C -0.515 4.515 18 H 0.066 0.934 19 C 0.057 3.943 20 N -0.900 5.900 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.398 0.602 31 H 0.398 0.602 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.863 8.144 -15.437 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 C -0.096 4.096 4 C -0.194 4.194 5 C 0.104 3.896 6 N -0.419 5.419 7 C -0.126 4.126 8 C -0.170 4.170 9 C -0.058 4.058 10 C 0.361 3.639 11 O -0.395 6.395 12 O -0.246 6.246 13 C -0.003 4.003 14 C -0.015 4.015 15 O -0.310 6.310 16 C 0.121 3.879 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.226 0.774 31 H 0.227 0.773 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.605 8.015 -15.620 22.837 hybrid contribution -0.137 0.173 0.604 0.643 sum 14.468 8.188 -15.016 22.402 Atomic orbital electron populations 1.20839 0.90484 1.02812 1.03465 1.19637 0.96287 0.91196 1.02272 1.20671 0.93298 0.97156 0.98444 1.20691 0.94351 0.96164 1.08221 1.17302 0.84214 0.92703 0.95350 1.42465 1.02872 1.10909 1.85617 1.19159 0.91568 0.94468 1.07420 1.20695 0.99843 0.94056 1.02377 1.18611 0.92213 0.90445 1.04576 1.21237 0.75910 0.84493 0.82301 1.90837 1.51779 1.63928 1.32970 1.86791 1.67718 1.37263 1.32873 1.23273 0.96215 0.82316 0.98485 1.22314 0.94861 0.93360 0.91002 1.87921 1.64177 1.48159 1.30734 1.20228 0.95035 0.95941 0.76728 1.21014 1.27307 1.08703 0.98283 0.91532 1.24944 0.96813 0.96099 0.96595 1.69953 1.44897 1.28468 1.10553 0.86387 0.80906 0.81266 0.77886 1.19990 1.21157 1.19953 0.89975 0.91071 0.91867 0.85148 0.85695 0.77368 0.77251 0.90980 0.91354 0.91300 0.90362 0.90387 0.91893 0.93202 0.97626 0.97523 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.61 36.00 0.35 -1.22 16 2 C -0.09 -1.25 5.92 -104.19 -0.62 -1.87 16 3 C -0.08 -0.85 9.68 -39.67 -0.38 -1.23 16 4 C -0.17 -1.71 9.89 -39.29 -0.39 -2.10 16 5 C 0.21 2.20 6.73 -83.83 -0.56 1.63 16 6 N -0.88 -6.16 8.99 32.39 0.29 -5.87 16 7 C -0.12 -1.54 5.93 -103.99 -0.62 -2.15 16 8 C -0.11 -1.20 9.17 36.01 0.33 -0.87 16 9 C -0.06 -0.85 5.75 -105.01 -0.60 -1.45 16 10 C 0.52 8.69 4.32 34.62 0.15 8.84 16 11 O -0.51 -9.17 16.89 -19.25 -0.33 -9.49 16 12 O -0.33 -5.96 10.20 -43.30 -0.44 -6.41 16 13 C 0.07 1.17 5.85 37.16 0.22 1.38 16 14 C 0.06 1.16 6.33 37.16 0.24 1.40 16 15 O -0.39 -9.60 10.30 -38.79 -0.40 -10.00 16 16 C 0.19 5.39 5.69 36.00 0.20 5.59 16 17 C -0.51 -15.31 9.43 -34.44 -0.32 -15.64 16 18 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 21 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.06 0.91 7.07 -51.93 -0.37 0.54 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.40 1.91 8.84 -40.82 -0.36 1.55 16 31 H 0.40 2.31 6.83 -40.82 -0.28 2.03 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 34 H 0.07 0.82 7.08 -51.93 -0.37 0.45 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -34.55 352.11 -7.87 -42.42 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.91 Total: -0.49 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.11 Total: -6.14 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 1.03 Total: -32.12 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -1.17 Total: -25.90 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.55 -7.87 -42.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873483753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.738 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds