Wall clock time and date at job start Tue Mar 31 2020 06:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38012 * 120.00280 * 2 1 4 4 C 1.38215 * 120.23426 * 180.02562 * 3 2 1 5 5 C 1.39034 * 120.22796 * 359.97438 * 4 3 2 6 6 N 1.39708 * 119.99790 * 180.02562 * 5 4 3 7 7 C 1.38627 * 119.99566 * 359.72814 * 5 4 3 8 8 C 1.50704 * 120.11111 * 180.29715 * 7 5 4 9 9 C 1.39537 * 119.77105 * 0.54915 * 7 5 4 10 10 C 1.47742 * 120.11683 * 179.72680 * 9 7 5 11 11 O 1.21473 * 119.99910 * 269.72559 * 10 9 7 12 12 O 1.34710 * 119.99949 * 89.44503 * 10 9 7 13 13 C 1.45202 * 116.99623 * 180.27328 * 12 10 9 14 14 C 1.53001 * 109.47151 * 180.02562 * 13 12 10 15 15 O 1.42904 * 109.46879 * 65.00398 * 14 13 12 16 16 C 1.42903 * 114.00021 * 180.02562 * 15 14 13 17 17 C 1.50693 * 109.47203 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00149 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00036 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99988 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00033 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47046 * 59.99868 * 21 19 17 23 23 H 1.48494 * 109.47040 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46893 * 299.99690 * 21 19 17 25 25 H 1.08998 * 109.47295 * 269.97820 * 1 2 3 26 26 H 1.09005 * 109.47203 * 29.97322 * 1 2 3 27 27 H 1.08998 * 109.47402 * 149.97076 * 1 2 3 28 28 H 1.07995 * 119.88542 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.88757 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00587 * 0.02562 * 6 5 4 31 31 H 0.96996 * 120.00118 * 179.97438 * 6 5 4 32 32 H 1.08995 * 109.47157 * 270.24906 * 8 7 5 33 33 H 1.09000 * 109.47397 * 30.25296 * 8 7 5 34 34 H 1.09001 * 109.46603 * 150.25182 * 8 7 5 35 35 H 1.08998 * 109.47630 * 300.00514 * 13 12 10 36 36 H 1.09004 * 109.46770 * 60.00918 * 13 12 10 37 37 H 1.09001 * 109.47325 * 185.00659 * 14 13 12 38 38 H 1.09002 * 109.47147 * 305.00626 * 14 13 12 39 39 H 1.09005 * 109.46679 * 300.00171 * 16 15 14 40 40 H 1.09000 * 109.47353 * 59.99602 * 16 15 14 41 41 H 0.96997 * 119.99921 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1952 0.0000 4 6 3.5792 1.2008 -0.0005 5 6 4.2840 0.0023 -0.0005 6 7 5.6811 0.0136 -0.0005 7 6 3.6005 -1.2037 0.0057 8 6 4.3618 -2.5043 0.0125 9 6 2.2051 -1.2093 0.0003 10 6 1.4689 -2.4902 0.0008 11 8 1.1659 -3.0169 -1.0510 12 8 1.1386 -3.0767 1.1677 13 6 0.4210 -4.3368 1.0920 14 6 0.1346 -4.8463 2.5060 15 8 -0.7551 -3.9437 3.1664 16 6 -1.0884 -4.3288 4.5016 17 6 -2.0256 -3.3111 5.0988 18 1 -2.3355 -2.4555 4.5171 19 6 -2.4876 -3.4723 6.3878 20 7 -2.1107 -4.5145 7.0960 21 14 -3.6501 -2.2111 7.1279 22 1 -4.8874 -2.1383 6.3098 23 1 -3.9973 -2.6119 8.5149 24 1 -2.9902 -0.8810 7.1470 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 1.6553 2.1294 0.0004 29 1 4.1136 2.1393 -0.0001 30 1 6.1594 0.8574 -0.0002 31 1 6.1728 -0.8225 -0.0002 32 1 4.5493 -2.8209 -1.0135 33 1 5.3114 -2.3667 0.5295 34 1 3.7753 -3.2659 0.5263 35 1 -0.5199 -4.1880 0.5623 36 1 1.0270 -5.0685 0.5577 37 1 -0.3244 -5.8334 2.4506 38 1 1.0681 -4.9105 3.0651 39 1 -1.5725 -5.3054 4.4878 40 1 -0.1801 -4.3821 5.1019 41 1 -2.4360 -4.6280 8.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873483753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:35 Heat of formation + Delta-G solvation = -141.417296 kcal Electronic energy + Delta-G solvation = -23119.822754 eV Core-core repulsion = 19577.389907 eV Total energy + Delta-G solvation = -3542.432848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89128 -40.29060 -38.74567 -37.44258 -36.18299 -34.95405 -33.77800 -31.90100 -31.56711 -29.17385 -28.64338 -26.73585 -25.32442 -24.54211 -23.46828 -21.90849 -21.50565 -19.20300 -18.72229 -18.47850 -18.15421 -17.75239 -16.95944 -16.61318 -16.38143 -16.22268 -15.80324 -15.34099 -15.18059 -15.16034 -14.44370 -14.23938 -14.21245 -14.08090 -13.75744 -13.60934 -13.25132 -13.08887 -12.99949 -12.93842 -12.71704 -12.60253 -12.45235 -12.22977 -12.02376 -11.80472 -11.59082 -11.30773 -11.28528 -10.90019 -10.28876 -9.82737 -8.36948 -8.32630 -6.45036 0.06287 0.51232 0.92634 1.40150 1.45048 1.53394 1.61750 2.34411 2.70230 2.99048 3.01239 3.03444 3.53313 3.77662 3.86754 3.88726 3.99921 4.05629 4.30493 4.35045 4.42637 4.46374 4.57904 4.59704 4.64871 4.68053 4.70275 4.76726 4.83382 5.04442 5.15576 5.16573 5.19468 5.28722 5.32221 5.53494 5.57050 5.81863 5.94197 6.47334 6.53443 6.54128 6.78118 7.00495 7.26463 8.79489 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003487 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.130891 B = 8028.085709 C = 8628.961958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C -0.075 4.075 4 C -0.168 4.168 5 C 0.211 3.789 6 N -0.862 5.862 7 C -0.141 4.141 8 C -0.112 4.112 9 C -0.090 4.090 10 C 0.523 3.477 11 O -0.528 6.528 12 O -0.351 6.351 13 C 0.073 3.927 14 C 0.055 3.945 15 O -0.409 6.409 16 C 0.209 3.791 17 C -0.552 4.552 18 H 0.060 0.940 19 C 0.009 3.991 20 N -0.929 5.929 21 Si 0.982 3.018 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.266 1.266 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.039 0.961 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.412 0.588 31 H 0.405 0.595 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.056 0.944 39 H -0.007 1.007 40 H -0.012 1.012 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.987 10.163 -15.575 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.190 4.190 5 C 0.105 3.895 6 N -0.404 5.404 7 C -0.146 4.146 8 C -0.168 4.168 9 C -0.092 4.092 10 C 0.367 3.633 11 O -0.418 6.418 12 O -0.267 6.267 13 C 0.000 4.000 14 C -0.022 4.022 15 O -0.330 6.330 16 C 0.134 3.866 17 C -0.590 4.590 18 H 0.078 0.922 19 C -0.190 4.190 20 N -0.569 5.569 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.190 1.190 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.058 0.942 28 H 0.175 0.825 29 H 0.177 0.823 30 H 0.243 0.757 31 H 0.236 0.764 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.011 0.989 40 H 0.006 0.994 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.778 10.029 -15.776 24.462 hybrid contribution -0.357 -0.471 0.593 0.837 sum 15.421 9.557 -15.183 23.657 Atomic orbital electron populations 1.20794 0.90975 1.03002 1.02449 1.19819 0.96317 0.91918 1.04014 1.20998 0.94060 0.97076 0.97230 1.21111 0.94132 0.97321 1.06469 1.17429 0.85646 0.92186 0.94229 1.42441 1.01521 1.12220 1.84211 1.19397 0.90954 0.96122 1.08101 1.20722 1.00434 0.92828 1.02865 1.18788 0.93378 0.89717 1.07313 1.21663 0.75242 0.84864 0.81485 1.90798 1.52838 1.64766 1.33413 1.86782 1.67973 1.37892 1.34030 1.23298 0.96706 0.82917 0.97105 1.22636 0.94215 0.93639 0.91669 1.87870 1.65614 1.50060 1.29411 1.19870 0.93765 0.94965 0.78020 1.21358 1.28832 1.09360 0.99411 0.92190 1.25942 0.98198 0.98258 0.96619 1.70053 1.45657 1.30054 1.11087 0.85251 0.78519 0.78420 0.77351 1.18989 1.19791 1.19036 0.91580 0.88338 0.94181 0.82483 0.82284 0.75710 0.76411 0.90343 0.88834 0.93277 0.90886 0.87115 0.89643 0.92598 0.98905 0.99390 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.61 71.23 0.68 -2.45 16 2 C -0.12 -3.23 5.92 -19.58 -0.12 -3.34 16 3 C -0.08 -1.51 9.68 22.21 0.21 -1.30 16 4 C -0.17 -2.85 9.89 22.46 0.22 -2.63 16 5 C 0.21 3.97 6.73 38.17 0.26 4.23 16 6 N -0.86 -9.40 8.99 -51.45 -0.46 -9.87 16 7 C -0.14 -3.47 5.93 -19.46 -0.12 -3.59 16 8 C -0.11 -2.30 9.17 71.24 0.65 -1.65 16 9 C -0.09 -2.75 5.75 -20.11 -0.12 -2.87 16 10 C 0.52 18.27 4.32 70.34 0.30 18.57 16 11 O -0.53 -19.85 16.89 19.92 0.34 -19.51 16 12 O -0.35 -13.15 10.20 -53.54 -0.55 -13.70 16 13 C 0.07 2.45 5.85 71.98 0.42 2.88 16 14 C 0.06 2.09 6.33 71.98 0.46 2.55 16 15 O -0.41 -20.84 10.30 -145.57 -1.50 -22.33 16 16 C 0.21 11.94 5.69 71.23 0.41 12.34 16 17 C -0.55 -33.57 9.43 25.60 0.24 -33.33 16 18 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 19 C 0.01 0.50 5.46 84.65 0.46 0.96 16 20 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 21 Si 0.98 44.76 29.54 68.60 2.03 46.78 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.10 2.00 8.09 -2.38 -0.02 1.98 16 27 H 0.04 1.23 7.07 -2.39 -0.02 1.21 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 30 H 0.41 2.40 8.84 -92.71 -0.82 1.58 16 31 H 0.41 3.50 6.83 -92.71 -0.63 2.86 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.35 6.56 -2.39 -0.02 1.34 16 34 H 0.05 1.19 7.08 -2.39 -0.02 1.17 16 35 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.11 2.98 8.14 -2.38 -0.02 2.96 16 37 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 40 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -76.37 352.11 3.72 -72.65 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -0.40 Total: 11.46 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 3.97 Total: -9.62 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.18 Total: -65.73 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -1.71 Total: -55.54 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -76.37 3.72 -72.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873483753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.764 kcal (2) G-P(sol) polarization free energy of solvation -76.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds