Wall clock time and date at job start Tue Mar 31 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 C 1.50697 * 119.94043 * 180.27986 * 6 5 4 8 8 C 1.52999 * 109.47305 * 270.32700 * 7 6 5 9 9 C 1.52999 * 109.47222 * 60.00197 * 8 7 6 10 10 C 1.52995 * 109.47184 * 299.99904 * 8 7 6 11 11 O 1.42896 * 109.47431 * 300.00222 * 10 8 7 12 12 N 1.46507 * 109.47075 * 180.02562 * 8 7 6 13 13 C 1.34772 * 119.99842 * 179.97438 * 12 8 7 14 14 O 1.21689 * 120.00323 * 0.02562 * 13 12 8 15 15 C 1.46373 * 119.99785 * 180.02562 * 13 12 8 16 16 H 1.07997 * 120.00695 * 359.97438 * 15 13 12 17 17 C 1.40053 * 120.00181 * 180.02562 * 15 13 12 18 18 N 1.30676 * 119.99801 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00324 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47046 * 89.99797 * 19 17 15 21 21 H 1.48503 * 109.47085 * 209.99804 * 19 17 15 22 22 H 1.48498 * 109.46833 * 329.99967 * 19 17 15 23 23 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 24 24 C 1.38146 * 120.05909 * 359.67357 * 23 6 5 25 25 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 26 26 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 27 27 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 30 30 H 1.09006 * 109.47054 * 30.32698 * 7 6 5 31 31 H 1.09004 * 109.47080 * 150.32728 * 7 6 5 32 32 H 1.09000 * 109.46884 * 60.00145 * 9 8 7 33 33 H 1.09000 * 109.47191 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47068 * 299.99830 * 9 8 7 35 35 H 1.09000 * 109.47019 * 60.00224 * 10 8 7 36 36 H 1.08997 * 109.47443 * 179.97438 * 10 8 7 37 37 H 0.96707 * 114.00590 * 179.97438 * 11 10 8 38 38 H 0.96998 * 120.00105 * 0.02562 * 12 8 7 39 39 H 0.97003 * 120.00108 * 180.02562 * 18 17 15 40 40 H 1.08006 * 119.97147 * 179.69567 * 23 6 5 41 41 H 1.07993 * 120.03340 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 6 3.9862 5.0184 -0.0018 8 6 4.2188 5.4728 1.4405 9 6 5.1008 4.4512 2.1612 10 6 2.8747 5.5856 2.1627 11 8 2.0509 6.5397 1.4897 12 7 4.8834 6.7784 1.4401 13 6 5.1896 7.3791 2.6070 14 8 4.9145 6.8368 3.6611 15 6 5.8532 8.6837 2.6065 16 1 6.0978 9.1649 1.6711 17 6 6.1719 9.3078 3.8192 18 7 5.8764 8.7254 4.9511 19 14 7.0193 10.9725 3.8186 20 1 5.9962 12.0488 3.8195 21 1 7.8687 11.0959 5.0305 22 1 7.8667 11.0961 2.6054 23 6 1.9212 3.6047 -0.0004 24 6 1.2916 2.3751 0.0001 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0209 0.3797 -0.0005 29 1 5.1346 2.5748 0.0090 30 1 4.9438 4.9380 -0.5163 31 1 3.3579 5.7462 -0.5152 32 1 6.0584 4.3709 1.6466 33 1 5.2669 4.7752 3.1886 34 1 4.6059 3.4800 2.1615 35 1 2.3798 4.6144 2.1631 36 1 3.0404 5.9089 3.1904 37 1 1.1809 6.6626 1.8936 38 1 5.1024 7.2108 0.5999 39 1 6.0968 9.1578 5.7910 40 1 1.3343 4.5114 -0.0003 41 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874738807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:10 Heat of formation + Delta-G solvation = -102.865480 kcal Electronic energy + Delta-G solvation = -23929.830439 eV Core-core repulsion = 20389.069323 eV Total energy + Delta-G solvation = -3540.761116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29192 -38.85323 -37.31975 -35.81055 -34.25277 -32.41472 -31.32621 -31.03159 -29.34344 -27.78381 -26.09955 -25.73743 -25.33346 -22.52973 -21.69654 -20.22588 -18.44324 -18.07807 -17.19804 -16.68001 -16.26489 -15.86411 -15.39343 -15.36601 -14.94134 -14.28363 -14.20869 -13.75447 -13.64995 -13.48334 -12.99461 -12.93158 -12.48022 -12.25087 -12.12297 -11.90509 -11.57288 -11.39809 -11.34994 -11.09324 -11.04479 -10.81924 -10.75725 -10.54536 -10.39078 -10.22299 -10.02892 -9.36151 -8.90404 -8.78622 -8.00304 -7.41093 -7.37231 -6.12338 -4.57414 1.38363 1.46543 3.16686 3.17646 3.23598 3.26846 3.78181 4.14446 4.63357 4.68775 4.74725 4.86457 4.92134 4.94470 4.99258 5.23645 5.27679 5.34811 5.44786 5.54108 5.56054 5.69250 5.88378 5.93118 6.07118 6.08345 6.18528 6.30894 6.39444 6.43328 6.47340 6.51933 6.74938 6.80770 6.86976 7.14759 7.34462 7.48573 8.00287 8.17053 8.24847 8.41563 9.08473 9.64315 10.65831 10.86436 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.003372 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.594691 B = 8300.641215 C = 8426.377806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.153 4.153 5 C -0.075 4.075 6 C -0.098 4.098 7 C -0.079 4.079 8 C 0.201 3.799 9 C -0.161 4.161 10 C 0.064 3.936 11 O -0.565 6.565 12 N -0.751 5.751 13 C 0.564 3.436 14 O -0.579 6.579 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.089 3.911 18 N -0.769 5.769 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.071 4.071 24 C -0.210 4.210 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.365 0.635 38 H 0.379 0.621 39 H 0.266 0.734 40 H 0.129 0.871 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 -12.773 -10.299 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.172 4.172 5 C -0.093 4.093 6 C -0.099 4.099 7 C -0.116 4.116 8 C 0.113 3.887 9 C -0.219 4.219 10 C -0.014 4.014 11 O -0.368 6.368 12 N -0.405 5.405 13 C 0.368 3.632 14 O -0.463 6.463 15 C -0.582 4.582 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.398 5.398 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.190 1.190 23 C -0.089 4.089 24 C -0.228 4.228 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.209 0.791 38 H 0.211 0.789 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.454 -13.325 -9.696 18.521 hybrid contribution -0.298 1.105 0.003 1.144 sum -8.752 -12.220 -9.693 17.885 Atomic orbital electron populations 1.23009 0.78718 1.03608 1.01321 1.86039 1.21135 1.27284 1.89075 1.19008 0.92384 0.83951 0.97677 1.20376 0.91264 0.98547 1.06971 1.20940 0.99996 0.90924 0.97405 1.19728 0.93469 0.95074 1.01636 1.20778 1.00273 0.93260 0.97326 1.19748 0.90489 0.85986 0.92443 1.22238 0.98598 0.97263 1.03832 1.22758 0.90665 0.89982 0.98025 1.86449 1.29625 1.64009 1.56750 1.46064 1.65675 1.19359 1.09441 1.18050 0.78319 0.85562 0.81281 1.90507 1.58192 1.66717 1.30866 1.20897 1.41006 1.03175 0.93085 0.91670 1.25673 0.94103 0.98162 0.95107 1.70018 1.35971 1.36070 0.97752 0.86424 0.79601 0.82695 0.78308 1.19849 1.20570 1.18992 1.20964 0.94253 0.97025 0.96703 1.21192 0.99722 0.92409 1.09519 0.92716 0.92807 0.88504 0.85495 0.85272 0.91078 0.90084 0.93001 0.89593 0.93210 0.94946 0.90836 0.79057 0.78929 0.92305 0.85329 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.76 10.50 -19.40 -0.20 -3.96 16 3 C 0.11 1.45 6.69 -39.21 -0.26 1.19 16 4 C -0.15 -1.93 9.99 -39.43 -0.39 -2.32 16 5 C -0.07 -0.97 7.85 -39.60 -0.31 -1.28 16 6 C -0.10 -1.37 4.02 -104.60 -0.42 -1.79 16 7 C -0.08 -1.20 4.42 -27.88 -0.12 -1.33 16 8 C 0.20 3.82 0.62 -131.82 -0.08 3.74 16 9 C -0.16 -3.08 7.79 37.16 0.29 -2.79 16 10 C 0.06 1.23 5.14 37.16 0.19 1.43 16 11 O -0.57 -10.10 12.41 -35.23 -0.44 -10.54 16 12 N -0.75 -16.79 4.97 -49.00 -0.24 -17.03 16 13 C 0.56 15.66 7.16 -12.99 -0.09 15.56 16 14 O -0.58 -17.72 11.22 5.20 0.06 -17.67 16 15 C -0.54 -15.40 9.54 -35.63 -0.34 -15.74 16 16 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 17 C 0.09 2.48 5.50 -17.36 -0.10 2.39 16 18 N -0.77 -22.89 11.83 55.55 0.66 -22.23 16 19 Si 0.90 20.32 29.56 -169.99 -5.02 15.30 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 C -0.07 -0.94 7.87 -39.61 -0.31 -1.25 16 24 C -0.21 -2.53 9.04 -39.43 -0.36 -2.88 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.13 1.51 8.01 -52.49 -0.42 1.09 16 30 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 2.00 6.16 -51.93 -0.32 1.68 16 34 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 35 H 0.03 0.56 6.17 -51.93 -0.32 0.24 16 36 H 0.07 1.73 6.16 -51.93 -0.32 1.41 16 37 H 0.36 4.99 9.12 45.56 0.42 5.41 16 38 H 0.38 7.75 8.45 -40.82 -0.35 7.41 16 39 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 40 H 0.13 1.64 7.59 -52.48 -0.40 1.24 16 41 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -34.43 332.89 -6.28 -40.71 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -4.78 Total: 14.28 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.32 Total: -3.87 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.41 Total: -39.26 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.58 Total: -32.16 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.43 -6.28 -40.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874738807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.158 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds