Wall clock time and date at job start Tue Mar 31 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 C 1.50697 * 119.94043 * 180.27986 * 6 5 4 8 8 C 1.52999 * 109.47305 * 270.32700 * 7 6 5 9 9 C 1.52999 * 109.47222 * 60.00197 * 8 7 6 10 10 C 1.52995 * 109.47184 * 299.99904 * 8 7 6 11 11 O 1.42896 * 109.47431 * 300.00222 * 10 8 7 12 12 N 1.46507 * 109.47075 * 180.02562 * 8 7 6 13 13 C 1.34772 * 119.99842 * 179.97438 * 12 8 7 14 14 O 1.21689 * 120.00323 * 0.02562 * 13 12 8 15 15 C 1.46373 * 119.99785 * 180.02562 * 13 12 8 16 16 H 1.07997 * 120.00695 * 359.97438 * 15 13 12 17 17 C 1.40053 * 120.00181 * 180.02562 * 15 13 12 18 18 N 1.30676 * 119.99801 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00324 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47046 * 89.99797 * 19 17 15 21 21 H 1.48503 * 109.47085 * 209.99804 * 19 17 15 22 22 H 1.48498 * 109.46833 * 329.99967 * 19 17 15 23 23 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 24 24 C 1.38146 * 120.05909 * 359.67357 * 23 6 5 25 25 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 26 26 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 27 27 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 30 30 H 1.09006 * 109.47054 * 30.32698 * 7 6 5 31 31 H 1.09004 * 109.47080 * 150.32728 * 7 6 5 32 32 H 1.09000 * 109.46884 * 60.00145 * 9 8 7 33 33 H 1.09000 * 109.47191 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47068 * 299.99830 * 9 8 7 35 35 H 1.09000 * 109.47019 * 60.00224 * 10 8 7 36 36 H 1.08997 * 109.47443 * 179.97438 * 10 8 7 37 37 H 0.96707 * 114.00590 * 179.97438 * 11 10 8 38 38 H 0.96998 * 120.00105 * 0.02562 * 12 8 7 39 39 H 0.97003 * 120.00108 * 180.02562 * 18 17 15 40 40 H 1.08006 * 119.97147 * 179.69567 * 23 6 5 41 41 H 1.07993 * 120.03340 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 6 3.9862 5.0184 -0.0018 8 6 4.2188 5.4728 1.4405 9 6 5.1008 4.4512 2.1612 10 6 2.8747 5.5856 2.1627 11 8 2.0509 6.5397 1.4897 12 7 4.8834 6.7784 1.4401 13 6 5.1896 7.3791 2.6070 14 8 4.9145 6.8368 3.6611 15 6 5.8532 8.6837 2.6065 16 1 6.0978 9.1649 1.6711 17 6 6.1719 9.3078 3.8192 18 7 5.8764 8.7254 4.9511 19 14 7.0193 10.9725 3.8186 20 1 5.9962 12.0488 3.8195 21 1 7.8687 11.0959 5.0305 22 1 7.8667 11.0961 2.6054 23 6 1.9212 3.6047 -0.0004 24 6 1.2916 2.3751 0.0001 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0209 0.3797 -0.0005 29 1 5.1346 2.5748 0.0090 30 1 4.9438 4.9380 -0.5163 31 1 3.3579 5.7462 -0.5152 32 1 6.0584 4.3709 1.6466 33 1 5.2669 4.7752 3.1886 34 1 4.6059 3.4800 2.1615 35 1 2.3798 4.6144 2.1631 36 1 3.0404 5.9089 3.1904 37 1 1.1809 6.6626 1.8936 38 1 5.1024 7.2108 0.5999 39 1 6.0968 9.1578 5.7910 40 1 1.3343 4.5114 -0.0003 41 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874738807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:09 Heat of formation + Delta-G solvation = -129.279387 kcal Electronic energy + Delta-G solvation = -23930.975832 eV Core-core repulsion = 20389.069323 eV Total energy + Delta-G solvation = -3541.906509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31064 -40.27137 -38.63872 -37.41771 -35.83219 -34.49401 -32.83540 -32.04781 -30.78720 -28.60498 -28.08859 -27.03169 -26.76953 -23.51525 -23.04203 -21.75235 -20.07692 -19.17956 -18.97099 -18.17382 -17.41759 -17.19318 -16.84307 -16.57269 -16.26055 -15.77203 -15.46785 -15.08148 -14.97123 -14.65833 -14.55824 -14.25264 -14.03746 -13.66919 -13.41442 -13.15318 -13.00749 -12.85707 -12.73878 -12.65275 -12.56046 -12.28096 -12.18102 -12.05618 -11.93834 -11.62667 -11.46061 -10.95188 -10.80894 -9.87793 -9.54571 -9.29347 -8.97995 -8.20989 -6.76992 0.42836 0.46778 1.40565 1.41798 1.56155 2.26860 2.41520 2.55505 2.77211 3.12215 3.46792 3.71072 3.88662 3.98112 4.09829 4.11202 4.16794 4.32522 4.40638 4.45912 4.51449 4.54107 4.65113 4.67729 4.75547 4.85604 4.86362 4.92620 5.05020 5.15245 5.24700 5.35672 5.36681 5.43689 5.50667 5.79443 5.85232 5.96870 6.31548 6.44566 6.48484 6.91578 6.94274 7.68290 8.59276 8.78133 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.003372 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.594691 B = 8300.641215 C = 8426.377806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.110 3.890 4 C -0.162 4.162 5 C -0.077 4.077 6 C -0.115 4.115 7 C -0.063 4.063 8 C 0.194 3.806 9 C -0.151 4.151 10 C 0.077 3.923 11 O -0.571 6.571 12 N -0.742 5.742 13 C 0.551 3.449 14 O -0.616 6.616 15 C -0.577 4.577 16 H 0.079 0.921 17 C 0.032 3.968 18 N -0.820 5.820 19 Si 0.991 3.009 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.252 1.252 23 C -0.077 4.077 24 C -0.210 4.210 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.383 0.617 38 H 0.389 0.611 39 H 0.271 0.729 40 H 0.131 0.869 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.342 -12.994 -12.035 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.065 3.935 4 C -0.181 4.181 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.101 4.101 8 C 0.107 3.893 9 C -0.209 4.209 10 C -0.002 4.002 11 O -0.377 6.377 12 N -0.395 5.395 13 C 0.354 3.646 14 O -0.502 6.502 15 C -0.614 4.614 16 H 0.097 0.903 17 C -0.183 4.183 18 N -0.450 5.450 19 Si 0.811 3.189 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.175 1.175 23 C -0.095 4.095 24 C -0.228 4.228 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.231 0.769 38 H 0.222 0.778 39 H 0.081 0.919 40 H 0.149 0.851 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.946 -13.566 -11.481 19.896 hybrid contribution -0.284 1.030 0.504 1.182 sum -9.230 -12.535 -10.976 19.047 Atomic orbital electron populations 1.23315 0.76679 1.05466 1.02107 1.86029 1.23293 1.26843 1.88818 1.19206 0.92681 0.84580 0.97024 1.20599 0.91739 0.98919 1.06816 1.21068 1.00582 0.90790 0.97091 1.19640 0.93919 0.94443 1.03531 1.20586 1.01199 0.94081 0.94194 1.19991 0.89902 0.84260 0.95177 1.22102 0.99519 0.98314 1.00943 1.22477 0.91455 0.90976 0.95257 1.86400 1.30793 1.63831 1.56657 1.45810 1.64939 1.20434 1.08358 1.18301 0.78281 0.85918 0.82100 1.90492 1.59467 1.67630 1.32623 1.21434 1.41737 1.04038 0.94181 0.90306 1.26838 0.94378 1.02784 0.94271 1.70178 1.37543 1.38534 0.98751 0.85121 0.78423 0.76457 0.78896 1.18911 1.19861 1.17518 1.21061 0.94057 0.97666 0.96743 1.21407 1.00940 0.91750 1.08730 0.92151 0.91711 0.86296 0.84254 0.84263 0.89801 0.90189 0.92095 0.94296 0.90903 0.92653 0.95900 0.76938 0.77792 0.91878 0.85079 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.09 10.50 -92.33 -0.97 -8.06 16 3 C 0.11 2.55 6.69 22.51 0.15 2.70 16 4 C -0.16 -3.77 9.99 22.37 0.22 -3.55 16 5 C -0.08 -1.86 7.85 22.26 0.17 -1.69 16 6 C -0.11 -2.99 4.02 -19.85 -0.08 -3.07 16 7 C -0.06 -1.84 4.42 29.85 0.13 -1.70 16 8 C 0.19 7.34 0.62 3.60 0.00 7.34 16 9 C -0.15 -5.82 7.79 71.98 0.56 -5.26 16 10 C 0.08 3.00 5.14 71.98 0.37 3.37 16 11 O -0.57 -20.16 12.41 -148.98 -1.85 -22.01 16 12 N -0.74 -33.55 4.97 -427.16 -2.12 -35.68 16 13 C 0.55 31.53 7.16 86.36 0.62 32.15 16 14 O -0.62 -39.53 11.22 -4.31 -0.05 -39.58 16 15 C -0.58 -33.12 9.54 24.83 0.24 -32.89 16 16 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 17 C 0.03 1.81 5.50 85.31 0.47 2.28 16 18 N -0.82 -50.30 11.83 21.84 0.26 -50.04 16 19 Si 0.99 41.80 29.56 68.60 2.03 43.83 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 23 C -0.08 -1.88 7.87 22.25 0.18 -1.70 16 24 C -0.21 -4.56 9.04 22.37 0.20 -4.36 16 25 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 26 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 27 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.14 2.98 8.01 -2.91 -0.02 2.96 16 30 H 0.08 2.21 8.09 -2.38 -0.02 2.19 16 31 H 0.08 2.36 7.62 -2.39 -0.02 2.34 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.04 1.88 6.16 -2.39 -0.01 1.86 16 34 H 0.07 2.42 6.16 -2.39 -0.01 2.41 16 35 H 0.06 1.88 6.17 -2.39 -0.01 1.87 16 36 H 0.02 1.13 6.16 -2.39 -0.01 1.11 16 37 H 0.38 10.23 9.12 -74.05 -0.68 9.56 16 38 H 0.39 15.81 8.45 -92.71 -0.78 15.02 16 39 H 0.27 15.16 8.29 -92.71 -0.77 14.40 16 40 H 0.13 3.08 7.59 -2.91 -0.02 3.06 16 41 H 0.15 2.41 6.30 -2.91 -0.02 2.39 16 Total: -1.00 -76.99 332.89 1.26 -75.73 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: -0.39 Total: 40.84 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 4.35 Total: -5.03 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -1.86 Total: -85.72 kcal Atomic # 8 Polarization: -66.78 SS G_CDS: -2.87 Total: -69.65 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -76.99 1.26 -75.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874738807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.545 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds