Wall clock time and date at job start Tue Mar 31 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61496 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47243 * 125.00677 * 7 6 5 9 9 O 1.20829 * 119.99567 * 359.97438 * 8 7 6 10 10 O 1.34226 * 120.00508 * 180.02562 * 8 7 6 11 11 C 1.45200 * 116.99944 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46812 * 179.97438 * 11 10 8 13 13 O 1.42900 * 109.47207 * 65.00149 * 12 11 10 14 14 C 1.42893 * 114.00388 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47673 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99571 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00403 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99855 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00302 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47157 * 89.99253 * 19 17 15 21 21 H 1.48497 * 109.47541 * 209.99719 * 19 17 15 22 22 H 1.48503 * 109.46957 * 329.99982 * 19 17 15 23 23 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 24 24 C 1.31890 * 121.72233 * 359.70023 * 23 6 5 25 25 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 26 26 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 27 27 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 30 30 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 31 31 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47495 * 245.00228 * 7 6 5 33 33 H 1.08995 * 109.47793 * 5.00270 * 7 6 5 34 34 H 1.08998 * 109.47494 * 299.99314 * 11 10 8 35 35 H 1.09002 * 109.47216 * 60.00211 * 11 10 8 36 36 H 1.08993 * 109.47090 * 184.99879 * 12 11 10 37 37 H 1.09001 * 109.47313 * 305.00327 * 12 11 10 38 38 H 1.09005 * 109.46819 * 300.00215 * 14 13 12 39 39 H 1.09004 * 109.47345 * 59.99254 * 14 13 12 40 40 H 0.96997 * 120.00065 * 179.97438 * 18 17 15 41 41 H 1.08003 * 119.61630 * 180.31786 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4397 5.4037 -0.1467 8 6 4.6926 5.4561 -0.9827 9 8 5.1330 4.4444 -1.4751 10 8 5.3197 6.6264 -1.1794 11 6 6.5210 6.6017 -1.9947 12 6 7.0909 8.0172 -2.1062 13 8 7.5182 8.4616 -0.8169 14 6 8.0692 9.7800 -0.8096 15 6 8.4845 10.1432 0.5927 16 1 8.3416 9.4378 1.3980 17 6 9.0461 11.3763 0.8479 18 7 9.2197 12.2354 -0.1326 19 14 9.5603 11.8267 2.5863 20 1 10.9699 11.4155 2.8078 21 1 9.4374 13.2946 2.7743 22 1 8.6823 11.1279 3.5590 23 7 2.7045 3.3241 -1.1996 24 6 2.2705 2.0787 -1.1916 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0935 1.5922 2.1423 31 1 2.9203 3.9352 2.0592 32 1 2.6764 6.0389 -0.5961 33 1 3.6599 5.7574 0.8604 34 1 7.2603 5.9474 -1.5328 35 1 6.2772 6.2292 -2.9897 36 1 7.9402 8.0142 -2.7892 37 1 6.3217 8.6898 -2.4857 38 1 8.9387 9.8139 -1.4661 39 1 7.3200 10.4889 -1.1622 40 1 9.6144 13.1030 0.0469 41 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885360358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:00 Heat of formation + Delta-G solvation = -113.664597 kcal Electronic energy + Delta-G solvation = -22034.929796 eV Core-core repulsion = 18493.700396 eV Total energy + Delta-G solvation = -3541.229400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83059 -39.90233 -37.05056 -36.01079 -35.20819 -32.78184 -32.61662 -31.77926 -30.08815 -28.15746 -26.86848 -24.25568 -23.93489 -22.54137 -22.20353 -21.49275 -20.62303 -17.67593 -16.98614 -16.82651 -16.43941 -16.37159 -15.81612 -15.60294 -15.27072 -14.64158 -14.41570 -14.32142 -14.22090 -13.76252 -13.42685 -13.37467 -13.09555 -12.86987 -12.50812 -12.38366 -12.07138 -11.88714 -11.69429 -11.40363 -11.37638 -10.90497 -10.83737 -10.73575 -10.32569 -10.28389 -10.03500 -9.99468 -9.56912 -9.12154 -9.05191 -8.86239 -8.20090 -6.11410 -4.13012 0.80393 1.08021 2.41408 2.81652 3.30320 3.35211 3.40629 3.60217 3.94848 4.33170 4.37192 4.42097 4.57218 4.66049 4.75443 4.86197 4.93474 4.98129 5.06163 5.18665 5.22900 5.25062 5.30143 5.37362 5.47138 5.50932 5.51721 5.59696 5.77040 5.85203 5.91142 5.96880 6.01605 6.13675 6.45158 6.70165 7.07057 7.41067 7.78599 7.81267 7.97781 8.13501 8.53900 8.99625 9.51617 11.00126 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.002318 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.390179 B =12078.709473 C =12778.297469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.075 4.075 5 C -0.158 4.158 6 C 0.132 3.868 7 C -0.065 4.065 8 C 0.465 3.535 9 O -0.500 6.500 10 O -0.343 6.343 11 C 0.076 3.924 12 C 0.062 3.938 13 O -0.391 6.391 14 C 0.194 3.806 15 C -0.514 4.514 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.271 1.271 23 N -0.456 5.456 24 C 0.106 3.894 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.571 -21.682 -0.201 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.139 4.139 4 C -0.101 4.101 5 C -0.177 4.177 6 C -0.006 4.006 7 C -0.103 4.103 8 C 0.307 3.693 9 O -0.388 6.388 10 O -0.259 6.259 11 C 0.003 3.997 12 C -0.016 4.016 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.736 3.264 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 N -0.164 5.164 24 C -0.052 4.052 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.200 -21.456 -1.037 27.519 hybrid contribution 0.372 0.082 1.270 1.326 sum -16.828 -21.374 0.233 27.205 Atomic orbital electron populations 1.21760 0.94503 1.01902 1.02298 1.20473 0.96232 0.91837 1.03267 1.20939 1.00859 0.97793 0.94348 1.21425 0.96326 0.94112 0.98205 1.21943 1.01121 0.95971 0.98704 1.20540 0.96137 0.94950 0.88969 1.20210 0.94152 0.93715 1.02196 1.23144 0.85132 0.81768 0.79276 1.90669 1.65385 1.35626 1.47102 1.86577 1.39614 1.33949 1.65755 1.23180 0.83963 0.98594 0.93989 1.22326 0.97596 0.92694 0.88974 1.87910 1.81495 1.35888 1.25796 1.20239 0.92259 0.77472 0.98074 1.21047 1.40254 1.00422 0.93518 0.91521 1.24957 0.95703 0.95879 0.98031 1.69963 1.44433 1.07726 1.31648 0.86321 0.78963 0.77434 0.83678 1.20484 1.21073 1.19615 1.67433 1.09490 1.08695 1.30743 1.22607 0.94793 0.90325 0.97452 0.92573 0.92435 0.92179 0.90613 0.90814 0.84792 0.84370 0.85850 0.85847 0.90644 0.90467 0.92010 0.93173 0.97630 0.97459 0.92645 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.08 -0.47 6.09 -27.88 -0.17 -0.64 16 3 C -0.14 -1.18 5.15 -104.48 -0.54 -1.72 16 4 C -0.07 -0.63 9.86 -39.28 -0.39 -1.01 16 5 C -0.16 -1.50 9.71 -39.44 -0.38 -1.88 16 6 C 0.13 1.57 5.76 -82.59 -0.48 1.09 16 7 C -0.06 -0.73 6.21 -29.03 -0.18 -0.91 16 8 C 0.47 7.22 7.89 36.01 0.28 7.51 16 9 O -0.50 -9.01 15.08 -18.75 -0.28 -9.29 16 10 O -0.34 -5.88 10.19 -42.01 -0.43 -6.31 16 11 C 0.08 1.27 5.85 37.16 0.22 1.49 16 12 C 0.06 1.16 6.33 37.16 0.24 1.39 16 13 O -0.39 -9.59 10.30 -38.80 -0.40 -9.99 16 14 C 0.19 5.34 5.69 36.00 0.20 5.55 16 15 C -0.51 -15.23 9.43 -34.44 -0.32 -15.55 16 16 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 19 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 N -0.46 -6.02 9.23 -9.47 -0.09 -6.11 16 24 C 0.11 1.12 10.86 -17.55 -0.19 0.93 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.14 0.97 7.95 -52.49 -0.42 0.56 16 32 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.12 1.09 7.87 -51.93 -0.41 0.69 16 34 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -35.46 358.79 -7.80 -43.26 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -6.28 Total: -5.02 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.44 Total: -2.64 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.65 Total: -32.25 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.11 Total: -25.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.46 -7.80 -43.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885360358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.406 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds