Wall clock time and date at job start Tue Mar 31 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61496 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47243 * 125.00677 * 7 6 5 9 9 O 1.20829 * 119.99567 * 359.97438 * 8 7 6 10 10 O 1.34226 * 120.00508 * 180.02562 * 8 7 6 11 11 C 1.45200 * 116.99944 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46812 * 179.97438 * 11 10 8 13 13 O 1.42900 * 109.47207 * 65.00149 * 12 11 10 14 14 C 1.42893 * 114.00388 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47673 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99571 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00403 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99855 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00302 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47157 * 89.99253 * 19 17 15 21 21 H 1.48497 * 109.47541 * 209.99719 * 19 17 15 22 22 H 1.48503 * 109.46957 * 329.99982 * 19 17 15 23 23 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 24 24 C 1.31890 * 121.72233 * 359.70023 * 23 6 5 25 25 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 26 26 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 27 27 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 30 30 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 31 31 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47495 * 245.00228 * 7 6 5 33 33 H 1.08995 * 109.47793 * 5.00270 * 7 6 5 34 34 H 1.08998 * 109.47494 * 299.99314 * 11 10 8 35 35 H 1.09002 * 109.47216 * 60.00211 * 11 10 8 36 36 H 1.08993 * 109.47090 * 184.99879 * 12 11 10 37 37 H 1.09001 * 109.47313 * 305.00327 * 12 11 10 38 38 H 1.09005 * 109.46819 * 300.00215 * 14 13 12 39 39 H 1.09004 * 109.47345 * 59.99254 * 14 13 12 40 40 H 0.96997 * 120.00065 * 179.97438 * 18 17 15 41 41 H 1.08003 * 119.61630 * 180.31786 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4397 5.4037 -0.1467 8 6 4.6926 5.4561 -0.9827 9 8 5.1330 4.4444 -1.4751 10 8 5.3197 6.6264 -1.1794 11 6 6.5210 6.6017 -1.9947 12 6 7.0909 8.0172 -2.1062 13 8 7.5182 8.4616 -0.8169 14 6 8.0692 9.7800 -0.8096 15 6 8.4845 10.1432 0.5927 16 1 8.3416 9.4378 1.3980 17 6 9.0461 11.3763 0.8479 18 7 9.2197 12.2354 -0.1326 19 14 9.5603 11.8267 2.5863 20 1 10.9699 11.4155 2.8078 21 1 9.4374 13.2946 2.7743 22 1 8.6823 11.1279 3.5590 23 7 2.7045 3.3241 -1.1996 24 6 2.2705 2.0787 -1.1916 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0935 1.5922 2.1423 31 1 2.9203 3.9352 2.0592 32 1 2.6764 6.0389 -0.5961 33 1 3.6599 5.7574 0.8604 34 1 7.2603 5.9474 -1.5328 35 1 6.2772 6.2292 -2.9897 36 1 7.9402 8.0142 -2.7892 37 1 6.3217 8.6898 -2.4857 38 1 8.9387 9.8139 -1.4661 39 1 7.3200 10.4889 -1.1622 40 1 9.6144 13.1030 0.0469 41 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885360358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:59 Heat of formation + Delta-G solvation = -135.301806 kcal Electronic energy + Delta-G solvation = -22035.868056 eV Core-core repulsion = 18493.700396 eV Total energy + Delta-G solvation = -3542.167660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.78205 -40.94427 -38.75354 -37.43553 -35.89526 -34.94296 -33.42740 -32.52091 -31.55939 -29.23585 -28.67841 -25.00067 -24.73302 -24.51458 -23.59078 -22.35995 -21.63931 -18.86243 -18.68456 -18.04887 -17.70973 -17.57817 -17.14848 -16.73669 -16.40614 -16.23826 -16.07691 -15.34200 -15.00443 -14.75654 -14.53554 -14.35059 -14.03966 -13.91066 -13.71123 -13.51741 -13.22754 -13.15110 -12.90657 -12.79914 -12.69095 -12.43940 -12.17378 -12.00314 -11.83911 -11.71611 -11.53447 -11.27935 -10.89426 -10.70904 -10.33445 -10.27207 -9.76659 -8.31824 -6.44069 0.07139 0.37969 1.21730 1.41054 1.43830 1.55957 1.68794 2.35001 2.83047 3.02002 3.05589 3.18211 3.70572 3.77630 3.84116 3.93169 4.01513 4.07093 4.09628 4.27582 4.40001 4.44790 4.48129 4.50739 4.50825 4.58525 4.68550 4.77330 4.85621 4.91317 5.05759 5.08417 5.17505 5.18078 5.37302 5.41711 5.45465 5.54687 5.78521 5.95212 6.49653 6.74814 6.79907 7.05792 7.27343 8.80329 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.002318 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.390179 B =12078.709473 C =12778.297469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.132 4.132 4 C -0.079 4.079 5 C -0.158 4.158 6 C 0.103 3.897 7 C -0.060 4.060 8 C 0.463 3.537 9 O -0.529 6.529 10 O -0.358 6.358 11 C 0.080 3.920 12 C 0.055 3.945 13 O -0.408 6.408 14 C 0.207 3.793 15 C -0.549 4.549 16 H 0.061 0.939 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.984 3.016 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.264 1.264 23 N -0.494 5.494 24 C 0.084 3.916 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.057 0.943 38 H -0.009 1.009 39 H -0.010 1.010 40 H 0.271 0.729 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.254 -22.604 1.631 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.134 4.134 4 C -0.105 4.105 5 C -0.178 4.178 6 C -0.034 4.034 7 C -0.097 4.097 8 C 0.307 3.693 9 O -0.419 6.419 10 O -0.275 6.275 11 C 0.007 3.993 12 C -0.022 4.022 13 O -0.328 6.328 14 C 0.132 3.868 15 C -0.587 4.587 16 H 0.079 0.921 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.807 3.193 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.188 1.188 23 N -0.203 5.203 24 C -0.074 4.074 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.080 0.920 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.900 -22.394 0.777 28.679 hybrid contribution 0.530 0.280 0.615 0.859 sum -17.370 -22.114 1.393 28.155 Atomic orbital electron populations 1.21738 0.93827 1.02683 1.01936 1.20537 0.96671 0.90161 1.04211 1.21245 0.99469 0.98899 0.93800 1.21842 0.95422 0.93834 0.99355 1.22247 1.00268 0.96575 0.98689 1.20720 0.97667 0.95283 0.89719 1.20378 0.92236 0.94421 1.02682 1.23985 0.85695 0.80715 0.78919 1.90647 1.66387 1.36360 1.48458 1.86580 1.39724 1.35166 1.66034 1.23117 0.84016 0.96834 0.95363 1.22628 0.98594 0.93943 0.87022 1.87856 1.81520 1.34218 1.29223 1.19890 0.91199 0.78634 0.97098 1.21378 1.41771 1.01272 0.94265 0.92077 1.25967 0.95006 0.95361 1.02946 1.70064 1.44472 1.08221 1.34072 0.85170 0.78885 0.77566 0.77715 1.19371 1.19865 1.18814 1.67350 1.10804 1.10075 1.32033 1.22910 0.95472 0.90072 0.98911 0.92597 0.93158 0.90827 0.90092 0.89471 0.81867 0.81982 0.84291 0.83346 0.91317 0.87903 0.90164 0.92462 0.99090 0.99179 0.92015 0.82015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 71.98 0.71 -0.49 16 2 C -0.08 -0.76 6.09 29.85 0.18 -0.57 16 3 C -0.13 -2.09 5.15 -19.77 -0.10 -2.20 16 4 C -0.08 -1.16 9.86 22.47 0.22 -0.94 16 5 C -0.16 -2.74 9.71 22.36 0.22 -2.52 16 6 C 0.10 2.40 5.76 42.55 0.25 2.65 16 7 C -0.06 -1.30 6.21 29.10 0.18 -1.12 16 8 C 0.46 14.37 7.89 71.24 0.56 14.93 16 9 O -0.53 -19.28 15.08 21.95 0.33 -18.95 16 10 O -0.36 -12.29 10.19 -48.74 -0.50 -12.78 16 11 C 0.08 2.65 5.85 71.98 0.42 3.07 16 12 C 0.05 2.06 6.33 71.98 0.46 2.51 16 13 O -0.41 -20.34 10.30 -145.57 -1.50 -21.84 16 14 C 0.21 11.67 5.69 71.24 0.41 12.08 16 15 C -0.55 -32.93 9.43 25.60 0.24 -32.69 16 16 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 17 C 0.01 0.33 5.46 84.65 0.46 0.80 16 18 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 19 Si 0.98 44.31 29.54 68.60 2.03 46.33 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 23 N -0.49 -13.16 9.23 -183.89 -1.70 -14.86 16 24 C 0.08 1.76 10.86 84.67 0.92 2.68 16 25 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 29 H 0.09 0.64 8.10 -2.39 -0.02 0.62 16 30 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.16 1.87 7.95 -2.91 -0.02 1.85 16 32 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.15 2.40 7.87 -2.39 -0.02 2.38 16 34 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 35 H 0.10 2.86 8.13 -2.39 -0.02 2.85 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 39 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -77.03 358.79 5.08 -71.95 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.01 Total: 7.39 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 5.12 Total: -1.81 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -1.41 Total: -70.29 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -1.66 Total: -53.58 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -77.03 5.08 -71.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885360358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.356 kcal (2) G-P(sol) polarization free energy of solvation -77.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds