Wall clock time and date at job start Tue Mar 31 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48505 * 109.47234 * 239.99915 * 3 2 1 5 5 H 1.48497 * 109.47232 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47331 * 120.00138 * 3 2 1 7 7 C 1.37878 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00831 * 158.48211 * 7 2 1 9 9 C 1.50707 * 119.99800 * 338.47994 * 7 2 1 10 10 C 1.53007 * 115.54641 * 324.48218 * 9 7 2 11 11 N 1.46896 * 109.47283 * 280.32165 * 10 9 7 12 12 C 1.48531 * 111.00079 * 283.45218 * 11 10 9 13 13 C 1.54934 * 103.22741 * 200.27589 * 12 11 10 14 14 C 1.54596 * 102.92420 * 37.41465 * 13 12 11 15 15 C 1.52995 * 110.31037 * 96.95239 * 14 13 12 16 16 O 1.42900 * 109.46845 * 61.45987 * 15 14 13 17 17 C 1.52998 * 110.31247 * 219.12873 * 14 13 12 18 18 F 1.39897 * 109.47227 * 58.54281 * 17 14 13 19 19 F 1.39907 * 109.47008 * 178.54381 * 17 14 13 20 20 F 1.39897 * 109.46837 * 298.53921 * 17 14 13 21 21 C 1.47901 * 111.00012 * 166.05407 * 11 10 9 22 22 C 1.52990 * 117.51890 * 110.18043 * 9 7 2 23 23 C 1.52993 * 117.49862 * 178.81382 * 9 7 2 24 24 H 0.97002 * 120.00207 * 5.50310 * 1 2 3 25 25 H 1.08998 * 109.47167 * 160.32358 * 10 9 7 26 26 H 1.08999 * 109.46942 * 40.32384 * 10 9 7 27 27 H 1.09002 * 110.67042 * 81.84503 * 12 11 10 28 28 H 1.08991 * 110.66858 * 318.71388 * 12 11 10 29 29 H 1.08998 * 110.72932 * 279.05725 * 13 12 11 30 30 H 1.09000 * 110.72484 * 155.77273 * 13 12 11 31 31 H 1.09000 * 109.47492 * 181.46143 * 15 14 13 32 32 H 1.09005 * 109.47629 * 301.46212 * 15 14 13 33 33 H 0.96709 * 114.00171 * 179.97438 * 16 15 14 34 34 H 1.08994 * 109.91783 * 26.49507 * 21 11 10 35 35 H 1.09000 * 109.91479 * 265.19598 * 21 11 10 36 36 H 1.09003 * 117.50168 * 214.97041 * 22 9 7 37 37 H 1.08997 * 117.50336 * 359.97438 * 22 9 7 38 38 H 1.09001 * 117.50094 * 359.97438 * 23 9 7 39 39 H 1.09006 * 117.49820 * 144.99419 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0280 -1.2266 -0.3436 9 6 1.3298 -2.4539 0.4777 10 6 0.3500 -2.2775 1.6395 11 7 1.0975 -2.1839 2.9006 12 6 1.5731 -3.5213 3.3380 13 6 1.8406 -3.3250 4.8514 14 6 0.6930 -2.3849 5.2863 15 6 -0.4568 -3.1942 5.8894 16 8 0.0061 -3.8870 7.0503 17 6 1.2043 -1.3538 6.2944 18 9 2.2433 -0.6146 5.7191 19 9 0.1608 -0.4926 6.6504 20 9 1.6760 -2.0115 7.4354 21 6 0.2338 -1.6860 3.9931 22 6 1.0000 -3.5201 -0.5688 23 6 2.1387 -3.7515 0.4265 24 1 -0.4850 0.8362 -0.0806 25 1 -0.3242 -3.1330 1.6795 26 1 -0.2286 -1.3656 1.4916 27 1 2.4914 -3.7925 2.8170 28 1 0.8021 -4.2750 3.1782 29 1 2.8091 -2.8521 5.0138 30 1 1.7812 -4.2763 5.3801 31 1 -1.2682 -2.5214 6.1672 32 1 -0.8177 -3.9152 5.1558 33 1 -0.6720 -4.4217 7.4858 34 1 -0.8071 -1.9346 3.7862 35 1 0.3477 -0.6067 4.0938 36 1 0.0850 -4.0959 -0.4296 37 1 1.2706 -3.3103 -1.6036 38 1 3.1587 -3.6941 0.0466 39 1 1.9728 -4.4796 1.2207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886813837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:51 Heat of formation + Delta-G solvation = -162.593177 kcal Electronic energy + Delta-G solvation = -25711.802839 eV Core-core repulsion = 21626.594996 eV Total energy + Delta-G solvation = -4085.207843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.84360 -47.34789 -47.23958 -39.37547 -37.08539 -35.84585 -32.15569 -32.12751 -29.48274 -26.23599 -25.82351 -25.33404 -23.76831 -21.28672 -20.88241 -20.01543 -19.01292 -18.13669 -17.95131 -17.53023 -17.23040 -16.22847 -15.00964 -14.87408 -14.65908 -14.40389 -14.15433 -14.04434 -13.78373 -13.72715 -13.55527 -13.42674 -13.37371 -13.30265 -12.63485 -12.25447 -12.01194 -11.84109 -11.44443 -11.37654 -11.15583 -10.93049 -10.82537 -10.63767 -10.45672 -10.26843 -10.17642 -10.02390 -9.25968 -9.09856 -8.66070 -7.97206 -7.61928 -6.05020 -3.96936 2.94079 3.34763 3.40269 3.48338 3.69679 3.92063 4.10884 4.35028 4.44076 4.58602 4.79054 4.92309 4.99148 5.10998 5.21095 5.27452 5.46420 5.57427 5.64882 5.78347 5.99697 6.01882 6.14155 6.19576 6.25048 6.38029 6.54184 6.67035 6.69404 6.91933 7.03144 7.34774 7.37473 7.47599 7.72640 7.90441 8.04524 8.51255 8.93828 9.58145 10.99377 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.006074 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.728796 B = 4608.586354 C = 5474.012665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.078 3.922 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.477 4.477 8 H 0.059 0.941 9 C 0.071 3.929 10 C 0.076 3.924 11 N -0.487 5.487 12 C 0.035 3.965 13 C -0.108 4.108 14 C -0.115 4.115 15 C 0.087 3.913 16 O -0.562 6.562 17 C 0.464 3.536 18 F -0.174 7.174 19 F -0.189 7.189 20 F -0.174 7.174 21 C 0.053 3.947 22 C -0.206 4.206 23 C -0.214 4.214 24 H 0.262 0.738 25 H 0.002 0.998 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.381 0.619 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -6.722 12.641 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.124 4.124 3 Si 0.713 3.287 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.070 3.930 10 C -0.051 4.051 11 N -0.210 5.210 12 C -0.092 4.092 13 C -0.146 4.146 14 C -0.118 4.118 15 C 0.009 3.991 16 O -0.367 6.367 17 C 0.410 3.590 18 F -0.155 7.155 19 F -0.170 7.170 20 F -0.155 7.155 21 C -0.076 4.076 22 C -0.245 4.245 23 C -0.252 4.252 24 H 0.072 0.928 25 H 0.020 0.980 26 H 0.143 0.857 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.228 0.772 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.734 -5.884 12.460 13.888 hybrid contribution -0.760 0.187 0.328 0.848 sum -2.493 -5.696 12.788 14.220 Atomic orbital electron populations 1.69816 1.06239 1.26980 1.48635 1.24841 0.94534 0.98924 0.94092 0.86765 0.80076 0.82967 0.78871 1.20471 1.21460 1.19761 1.20363 0.98201 0.90512 1.42292 0.92319 1.18760 0.94428 0.87810 0.91954 1.22188 0.94256 1.02147 0.86513 1.64792 1.34333 1.20405 1.01495 1.23474 1.01202 0.91626 0.92946 1.22611 0.96539 0.98640 0.96795 1.22821 0.98976 0.94976 0.94979 1.22156 0.93928 0.94990 0.88010 1.86555 1.41220 1.66322 1.42636 1.20229 0.75737 0.81581 0.81437 1.93219 1.59434 1.78562 1.84304 1.93141 1.58435 1.72626 1.92822 1.93190 1.88801 1.80617 1.52909 1.22818 0.96531 1.00462 0.87748 1.23018 0.97179 1.07768 0.96528 1.23010 0.95827 1.03951 1.02378 0.92801 0.98024 0.85722 0.88615 0.94510 0.89830 0.89565 0.92345 0.91603 0.77173 0.92711 0.89531 0.92162 0.90474 0.90826 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.88 11.09 55.43 0.61 -23.27 16 2 C 0.08 2.11 5.05 -17.82 -0.09 2.02 16 3 Si 0.89 21.19 29.59 -169.99 -5.03 16.16 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.48 -12.88 8.98 -34.44 -0.31 -13.19 16 8 H 0.06 1.61 7.90 -52.49 -0.41 1.19 16 9 C 0.07 1.72 1.93 -155.66 -0.30 1.42 16 10 C 0.08 1.69 4.51 -3.82 -0.02 1.67 16 11 N -0.49 -9.64 5.22 -230.46 -1.20 -10.84 16 12 C 0.04 0.58 4.93 -1.90 -0.01 0.57 16 13 C -0.11 -1.57 5.79 -24.87 -0.14 -1.72 16 14 C -0.12 -1.67 0.37 -153.15 -0.06 -1.73 16 15 C 0.09 0.99 5.57 37.16 0.21 1.20 16 16 O -0.56 -5.98 11.31 -35.23 -0.40 -6.38 16 17 C 0.46 7.23 2.05 37.16 0.08 7.30 16 18 F -0.17 -3.04 16.08 2.25 0.04 -3.01 16 19 F -0.19 -2.90 16.53 2.25 0.04 -2.86 16 20 F -0.17 -2.69 15.48 2.25 0.03 -2.65 16 21 C 0.05 0.90 5.60 -2.75 -0.02 0.89 16 22 C -0.21 -4.63 9.88 -26.74 -0.26 -4.89 16 23 C -0.21 -4.52 8.65 -26.74 -0.23 -4.75 16 24 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 25 H 0.00 0.03 7.55 -51.93 -0.39 -0.36 16 26 H 0.13 3.12 5.28 -51.93 -0.27 2.85 16 27 H 0.10 1.65 6.16 -51.93 -0.32 1.33 16 28 H 0.04 0.57 7.75 -51.93 -0.40 0.17 16 29 H 0.08 1.29 7.35 -51.93 -0.38 0.90 16 30 H 0.09 1.12 7.35 -51.93 -0.38 0.74 16 31 H 0.06 0.61 7.82 -51.93 -0.41 0.21 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.38 2.19 9.12 45.56 0.42 2.60 16 34 H 0.05 0.87 7.31 -51.93 -0.38 0.49 16 35 H 0.09 1.59 7.34 -51.93 -0.38 1.21 16 36 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.07 1.31 5.86 -51.93 -0.30 1.00 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -28.98 317.55 -6.72 -35.70 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.45 Total: 3.57 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.16 Total: -11.21 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: -0.59 Total: -34.10 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.40 Total: -6.38 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 0.11 Total: -8.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.98 -6.72 -35.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886813837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.892 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds