Wall clock time and date at job start Tue Mar 31 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48505 * 109.47234 * 239.99915 * 3 2 1 5 5 H 1.48497 * 109.47232 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47331 * 120.00138 * 3 2 1 7 7 C 1.37878 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00831 * 158.48211 * 7 2 1 9 9 C 1.50707 * 119.99800 * 338.47994 * 7 2 1 10 10 C 1.53007 * 115.54641 * 324.48218 * 9 7 2 11 11 N 1.46896 * 109.47283 * 280.32165 * 10 9 7 12 12 C 1.48531 * 111.00079 * 283.45218 * 11 10 9 13 13 C 1.54934 * 103.22741 * 200.27589 * 12 11 10 14 14 C 1.54596 * 102.92420 * 37.41465 * 13 12 11 15 15 C 1.52995 * 110.31037 * 96.95239 * 14 13 12 16 16 O 1.42900 * 109.46845 * 61.45987 * 15 14 13 17 17 C 1.52998 * 110.31247 * 219.12873 * 14 13 12 18 18 F 1.39897 * 109.47227 * 58.54281 * 17 14 13 19 19 F 1.39907 * 109.47008 * 178.54381 * 17 14 13 20 20 F 1.39897 * 109.46837 * 298.53921 * 17 14 13 21 21 C 1.47901 * 111.00012 * 166.05407 * 11 10 9 22 22 C 1.52990 * 117.51890 * 110.18043 * 9 7 2 23 23 C 1.52993 * 117.49862 * 178.81382 * 9 7 2 24 24 H 0.97002 * 120.00207 * 5.50310 * 1 2 3 25 25 H 1.08998 * 109.47167 * 160.32358 * 10 9 7 26 26 H 1.08999 * 109.46942 * 40.32384 * 10 9 7 27 27 H 1.09002 * 110.67042 * 81.84503 * 12 11 10 28 28 H 1.08991 * 110.66858 * 318.71388 * 12 11 10 29 29 H 1.08998 * 110.72932 * 279.05725 * 13 12 11 30 30 H 1.09000 * 110.72484 * 155.77273 * 13 12 11 31 31 H 1.09000 * 109.47492 * 181.46143 * 15 14 13 32 32 H 1.09005 * 109.47629 * 301.46212 * 15 14 13 33 33 H 0.96709 * 114.00171 * 179.97438 * 16 15 14 34 34 H 1.08994 * 109.91783 * 26.49507 * 21 11 10 35 35 H 1.09000 * 109.91479 * 265.19598 * 21 11 10 36 36 H 1.09003 * 117.50168 * 214.97041 * 22 9 7 37 37 H 1.08997 * 117.50336 * 359.97438 * 22 9 7 38 38 H 1.09001 * 117.50094 * 359.97438 * 23 9 7 39 39 H 1.09006 * 117.49820 * 144.99419 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0280 -1.2266 -0.3436 9 6 1.3298 -2.4539 0.4777 10 6 0.3500 -2.2775 1.6395 11 7 1.0975 -2.1839 2.9006 12 6 1.5731 -3.5213 3.3380 13 6 1.8406 -3.3250 4.8514 14 6 0.6930 -2.3849 5.2863 15 6 -0.4568 -3.1942 5.8894 16 8 0.0061 -3.8870 7.0503 17 6 1.2043 -1.3538 6.2944 18 9 2.2433 -0.6146 5.7191 19 9 0.1608 -0.4926 6.6504 20 9 1.6760 -2.0115 7.4354 21 6 0.2338 -1.6860 3.9931 22 6 1.0000 -3.5201 -0.5688 23 6 2.1387 -3.7515 0.4265 24 1 -0.4850 0.8362 -0.0806 25 1 -0.3242 -3.1330 1.6795 26 1 -0.2286 -1.3656 1.4916 27 1 2.4914 -3.7925 2.8170 28 1 0.8021 -4.2750 3.1782 29 1 2.8091 -2.8521 5.0138 30 1 1.7812 -4.2763 5.3801 31 1 -1.2682 -2.5214 6.1672 32 1 -0.8177 -3.9152 5.1558 33 1 -0.6720 -4.4217 7.4858 34 1 -0.8071 -1.9346 3.7862 35 1 0.3477 -0.6067 4.0938 36 1 0.0850 -4.0959 -0.4296 37 1 1.2706 -3.3103 -1.6036 38 1 3.1587 -3.6941 0.0466 39 1 1.9728 -4.4796 1.2207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886813837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:51 Heat of formation + Delta-G solvation = -182.131871 kcal Electronic energy + Delta-G solvation = -25712.650101 eV Core-core repulsion = 21626.594996 eV Total energy + Delta-G solvation = -4086.055105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.08958 -48.60271 -48.49173 -40.67239 -38.45917 -37.06927 -34.16862 -33.44413 -30.75302 -27.90585 -27.12741 -26.84608 -25.14104 -22.92812 -22.32312 -21.22803 -20.85562 -19.37865 -19.19046 -18.61362 -18.16701 -18.06809 -16.64829 -16.33575 -16.09651 -15.61851 -15.52599 -15.35404 -15.31345 -15.03625 -14.88602 -14.72919 -14.62515 -14.46949 -14.22957 -13.74875 -13.47070 -13.10300 -12.98876 -12.89541 -12.76808 -12.61040 -12.37877 -12.28066 -11.91028 -11.80411 -11.68903 -11.12546 -10.99495 -10.94848 -10.48613 -9.87976 -9.09150 -8.07847 -6.04108 1.40487 1.46214 1.53143 1.73933 2.45325 2.64870 2.72853 2.93589 3.01286 3.17973 3.38218 3.63749 3.68909 3.88067 4.01949 4.19093 4.23037 4.35348 4.41629 4.47546 4.53026 4.61324 4.71176 4.75818 4.86034 4.93842 4.99567 5.00494 5.08004 5.19295 5.32267 5.60240 5.65036 6.02470 6.19990 6.35653 6.55301 6.86073 6.90388 7.51858 8.94876 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.006074 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.728796 B = 4608.586354 C = 5474.012665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.044 3.956 3 Si 0.932 3.068 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.498 4.498 8 H 0.042 0.958 9 C 0.039 3.961 10 C 0.090 3.910 11 N -0.514 5.514 12 C 0.038 3.962 13 C -0.099 4.099 14 C -0.109 4.109 15 C 0.094 3.906 16 O -0.574 6.574 17 C 0.462 3.538 18 F -0.190 7.190 19 F -0.189 7.189 20 F -0.172 7.172 21 C 0.054 3.946 22 C -0.207 4.207 23 C -0.189 4.189 24 H 0.262 0.738 25 H 0.013 0.987 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -8.170 13.902 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.157 4.157 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.038 3.962 10 C -0.037 4.037 11 N -0.237 5.237 12 C -0.089 4.089 13 C -0.137 4.137 14 C -0.112 4.112 15 C 0.016 3.984 16 O -0.383 6.383 17 C 0.408 3.592 18 F -0.172 7.172 19 F -0.170 7.170 20 F -0.153 7.153 21 C -0.074 4.074 22 C -0.246 4.246 23 C -0.227 4.227 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.215 -7.347 13.731 15.730 hybrid contribution -0.586 0.624 -0.042 0.857 sum -2.801 -6.724 13.689 15.506 Atomic orbital electron populations 1.69906 1.06861 1.27320 1.49205 1.25326 0.95171 1.00998 0.94192 0.86032 0.79116 0.80550 0.78424 1.20057 1.20864 1.20564 1.20593 0.97726 0.92455 1.42749 0.93933 1.18882 0.96216 0.87727 0.93356 1.21829 0.93750 1.00936 0.87233 1.64626 1.34931 1.22699 1.01493 1.23453 1.01100 0.90409 0.93966 1.22548 0.95943 0.99570 0.95617 1.22786 1.00091 0.94666 0.93608 1.22056 0.92326 0.95274 0.88746 1.86491 1.42702 1.66739 1.42418 1.20445 0.75368 0.81678 0.81752 1.93187 1.60294 1.79096 1.84605 1.93138 1.58284 1.72740 1.92839 1.93190 1.88799 1.80485 1.52809 1.22704 0.96939 0.99409 0.88344 1.22990 0.98522 1.07306 0.95759 1.23002 0.95069 1.02498 1.02097 0.92846 0.96915 0.88782 0.89460 0.92787 0.91076 0.87264 0.91419 0.89982 0.74506 0.91439 0.91825 0.90540 0.91840 0.91274 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.17 11.09 21.45 0.24 -48.93 16 2 C 0.04 2.38 5.05 84.66 0.43 2.81 16 3 Si 0.93 44.04 29.59 68.60 2.03 46.07 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.50 -27.25 8.98 25.60 0.23 -27.02 16 8 H 0.04 2.38 7.90 -2.91 -0.02 2.36 16 9 C 0.04 1.86 1.93 -52.93 -0.10 1.76 16 10 C 0.09 3.95 4.51 86.31 0.39 4.34 16 11 N -0.51 -19.87 5.22 -883.04 -4.61 -24.47 16 12 C 0.04 1.17 4.93 86.65 0.43 1.59 16 13 C -0.10 -2.65 5.79 31.80 0.18 -2.46 16 14 C -0.11 -2.95 0.37 -51.30 -0.02 -2.96 16 15 C 0.09 1.83 5.57 71.98 0.40 2.23 16 16 O -0.57 -10.12 11.31 -148.98 -1.68 -11.81 16 17 C 0.46 13.79 2.05 71.98 0.15 13.94 16 18 F -0.19 -6.64 16.08 44.97 0.72 -5.91 16 19 F -0.19 -5.57 16.53 44.97 0.74 -4.83 16 20 F -0.17 -4.99 15.48 44.97 0.70 -4.29 16 21 C 0.05 1.80 5.60 86.45 0.48 2.28 16 22 C -0.21 -9.09 9.88 30.59 0.30 -8.79 16 23 C -0.19 -7.70 8.65 30.59 0.26 -7.44 16 24 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 25 H 0.01 0.52 7.55 -2.39 -0.02 0.50 16 26 H 0.09 4.75 5.28 -2.39 -0.01 4.73 16 27 H 0.09 2.82 6.16 -2.39 -0.01 2.80 16 28 H 0.05 1.49 7.75 -2.39 -0.02 1.47 16 29 H 0.07 2.09 7.35 -2.39 -0.02 2.07 16 30 H 0.11 2.44 7.35 -2.39 -0.02 2.43 16 31 H 0.07 1.20 7.82 -2.39 -0.02 1.19 16 32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.40 3.04 9.12 -74.05 -0.68 2.37 16 34 H 0.07 2.03 7.31 -2.39 -0.02 2.02 16 35 H 0.06 2.37 7.34 -2.39 -0.02 2.35 16 36 H 0.08 3.07 8.09 -2.39 -0.02 3.05 16 37 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.10 3.38 5.86 -2.38 -0.01 3.37 16 Total: -1.00 -61.85 317.55 1.68 -60.17 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.41 Total: 13.74 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 3.14 Total: -19.73 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -4.37 Total: -73.41 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.68 Total: -11.81 kcal Atomic # 9 Polarization: -17.20 SS G_CDS: 2.16 Total: -15.03 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -61.85 1.68 -60.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886813837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.966 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds