Wall clock time and date at job start Tue Mar 31 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99722 * 2 1 4 4 H 1.48496 * 109.47194 * 268.28089 * 3 2 1 5 5 H 1.48503 * 109.47188 * 28.28409 * 3 2 1 6 6 H 1.48502 * 109.46935 * 148.28223 * 3 2 1 7 7 C 1.37875 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99896 * 354.69610 * 7 2 1 9 9 C 1.50704 * 120.00047 * 174.70351 * 7 2 1 10 10 C 1.52998 * 115.55203 * 89.27665 * 9 7 2 11 11 N 1.46908 * 109.46630 * 54.76360 * 10 9 7 12 12 C 1.48528 * 111.00002 * 77.44072 * 11 10 9 13 13 C 1.54932 * 103.23084 * 159.71908 * 12 11 10 14 14 C 1.55041 * 102.99318 * 322.65073 * 13 12 11 15 15 C 1.52995 * 110.37492 * 262.99623 * 14 13 12 16 16 O 1.42899 * 109.47195 * 295.49522 * 15 14 13 17 17 C 1.53001 * 110.44930 * 140.69029 * 14 13 12 18 18 F 1.39895 * 109.47379 * 304.45900 * 17 14 13 19 19 F 1.39898 * 109.47292 * 64.46500 * 17 14 13 20 20 F 1.39903 * 109.46857 * 184.46300 * 17 14 13 21 21 C 1.47908 * 110.99617 * 194.83125 * 11 10 9 22 22 C 1.52997 * 117.49641 * 234.95286 * 9 7 2 23 23 C 1.53004 * 117.49507 * 303.61054 * 9 7 2 24 24 H 0.96996 * 119.99870 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47403 * 294.76801 * 10 9 7 26 26 H 1.08998 * 109.47328 * 174.76289 * 10 9 7 27 27 H 1.09000 * 110.66706 * 278.15258 * 12 11 10 28 28 H 1.09007 * 110.67154 * 41.28044 * 12 11 10 29 29 H 1.08995 * 110.72636 * 80.93829 * 13 12 11 30 30 H 1.08999 * 110.72838 * 204.22651 * 13 12 11 31 31 H 1.09005 * 109.47049 * 55.49288 * 15 14 13 32 32 H 1.09002 * 109.47397 * 175.49280 * 15 14 13 33 33 H 0.96700 * 114.00121 * 179.97438 * 16 15 14 34 34 H 1.08999 * 109.91607 * 333.51270 * 21 11 10 35 35 H 1.09001 * 109.91081 * 94.60814 * 21 11 10 36 36 H 1.09005 * 117.49760 * 214.99860 * 22 9 7 37 37 H 1.08995 * 117.49775 * 0.02562 * 22 9 7 38 38 H 1.08996 * 117.49939 * 359.97438 * 23 9 7 39 39 H 1.09002 * 117.49821 * 144.99914 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5330 2.0255 -1.3994 5 1 1.4288 2.6629 0.6634 6 1 3.5280 1.4510 0.7361 7 6 2.0046 -1.1940 -0.0005 8 1 1.4680 -2.1273 0.0855 9 6 3.5068 -1.1967 -0.1210 10 6 4.2749 -1.1174 1.1998 11 7 3.8328 -2.2000 2.0890 12 6 4.4383 -3.4966 1.6909 13 6 4.3119 -4.3558 2.9739 14 6 4.5781 -3.3315 4.1070 15 6 6.0393 -3.4006 4.5551 16 8 6.3000 -4.6807 5.1341 17 6 3.6454 -3.5907 5.2918 18 9 2.3173 -3.5716 4.8528 19 9 3.9347 -4.8412 5.8483 20 9 3.8314 -2.5960 6.2579 21 6 4.2758 -1.9582 3.4793 22 6 4.1235 -2.0273 -1.2482 23 6 4.1191 -0.4992 -1.3373 24 1 -0.4850 0.8400 0.0004 25 1 4.0823 -0.1556 1.6750 26 1 5.3426 -1.2196 1.0059 27 1 3.8794 -3.9463 0.8702 28 1 5.4853 -3.3646 1.4178 29 1 3.3089 -4.7732 3.0614 30 1 5.0621 -5.1465 2.9842 31 1 6.6908 -3.2519 3.6939 32 1 6.2301 -2.6220 5.2937 33 1 7.2098 -4.7957 5.4410 34 1 5.1757 -1.3431 3.4806 35 1 3.4848 -1.4598 4.0396 36 1 5.0766 -2.5174 -1.0488 37 1 3.4428 -2.5714 -1.9028 38 1 3.4355 -0.0387 -2.0505 39 1 5.0693 0.0161 -1.1965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886813838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:53 Heat of formation + Delta-G solvation = -162.276060 kcal Electronic energy + Delta-G solvation = -25560.741479 eV Core-core repulsion = 21475.547387 eV Total energy + Delta-G solvation = -4085.194092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.86694 -47.37768 -47.25314 -39.47053 -37.26608 -36.12820 -32.43057 -31.91408 -29.60365 -26.68065 -25.88904 -25.27162 -23.82807 -21.61146 -21.19105 -20.14690 -18.91167 -18.15950 -17.98878 -17.64448 -17.26657 -16.30430 -15.20893 -14.97861 -14.82167 -14.50783 -14.19149 -14.13584 -13.83602 -13.70159 -13.62918 -13.55272 -13.41886 -13.35035 -12.71330 -12.50920 -12.36814 -11.95769 -11.69760 -11.56810 -11.47236 -11.07304 -10.99466 -10.70165 -10.44695 -10.31731 -10.26346 -10.03117 -9.57983 -8.96695 -8.46713 -8.42968 -7.81002 -5.96969 -3.95058 2.89294 3.33666 3.42492 3.43686 3.60410 3.86544 4.01964 4.27266 4.39527 4.51025 4.70836 4.83846 4.89462 5.03582 5.11238 5.16377 5.29493 5.34971 5.45382 5.58404 5.81024 5.84996 5.90211 5.99273 6.11860 6.12851 6.18487 6.24617 6.43111 6.48624 6.73034 7.05714 7.15218 7.29477 7.34171 7.61611 7.87696 8.66542 9.10454 9.66672 11.15977 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.005390 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.173856 B = 5193.095808 C = 5686.479759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.013 3.987 10 C 0.083 3.917 11 N -0.477 5.477 12 C 0.043 3.957 13 C -0.107 4.107 14 C -0.116 4.116 15 C 0.088 3.912 16 O -0.560 6.560 17 C 0.465 3.535 18 F -0.172 7.172 19 F -0.172 7.172 20 F -0.189 7.189 21 C 0.048 3.952 22 C -0.183 4.183 23 C -0.204 4.204 24 H 0.262 0.738 25 H 0.072 0.928 26 H 0.013 0.987 27 H 0.095 0.905 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.381 0.619 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.516 -6.694 9.123 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.127 4.127 3 Si 0.707 3.293 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.494 4.494 8 H 0.097 0.903 9 C 0.012 3.988 10 C -0.045 4.045 11 N -0.200 5.200 12 C -0.084 4.084 13 C -0.145 4.145 14 C -0.118 4.118 15 C 0.010 3.990 16 O -0.366 6.366 17 C 0.411 3.589 18 F -0.153 7.153 19 F -0.153 7.153 20 F -0.171 7.171 21 C -0.081 4.081 22 C -0.220 4.220 23 C -0.242 4.242 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.031 0.969 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.229 0.771 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.113 -6.667 8.972 17.231 hybrid contribution 1.766 1.260 0.386 2.204 sum 14.879 -5.407 9.358 18.390 Atomic orbital electron populations 1.69894 1.06235 1.26662 1.51252 1.24929 0.94496 0.98625 0.94682 0.86927 0.80182 0.84018 0.78173 1.20700 1.22370 1.18947 1.20106 0.86125 0.94453 1.48701 0.90269 1.19340 0.95829 0.98794 0.84863 1.22139 0.93793 0.93771 0.94799 1.64737 1.54232 1.02053 0.98974 1.23263 0.97294 0.90669 0.97215 1.22681 1.03792 0.96289 0.91743 1.22859 0.93738 1.01064 0.94097 1.22145 0.93161 0.86074 0.97662 1.86578 1.34638 1.33609 1.81744 1.20165 0.80669 0.74181 0.83911 1.93238 1.36729 1.96124 1.89190 1.93200 1.93208 1.42156 1.86768 1.93140 1.95207 1.62200 1.66520 1.22883 1.00321 0.92081 0.92812 1.22841 1.00639 0.92693 1.05809 1.22996 1.01193 0.95052 1.04987 0.92860 0.90995 0.96862 0.88647 0.94402 0.89442 0.89490 0.91685 0.92415 0.77140 0.92887 0.89190 0.91487 0.89562 0.89291 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.58 24.99 -169.99 -4.25 17.34 16 4 H -0.28 -6.78 7.07 56.52 0.40 -6.38 16 5 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.26 -6.07 5.55 56.52 0.31 -5.75 16 7 C -0.46 -12.46 9.11 -34.44 -0.31 -12.77 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.01 0.29 0.87 -155.66 -0.13 0.15 16 10 C 0.08 1.62 4.46 -3.82 -0.02 1.60 16 11 N -0.48 -8.75 4.90 -230.45 -1.13 -9.88 16 12 C 0.04 0.66 5.95 -1.90 -0.01 0.65 16 13 C -0.11 -1.47 5.88 -24.63 -0.14 -1.61 16 14 C -0.12 -1.55 0.38 -152.91 -0.06 -1.61 16 15 C 0.09 0.89 5.55 37.15 0.21 1.10 16 16 O -0.56 -5.50 11.24 -35.23 -0.40 -5.90 16 17 C 0.47 6.93 2.07 37.16 0.08 7.01 16 18 F -0.17 -2.95 16.09 2.25 0.04 -2.92 16 19 F -0.17 -2.57 15.32 2.25 0.03 -2.54 16 20 F -0.19 -2.77 16.55 2.25 0.04 -2.73 16 21 C 0.05 0.73 5.58 -2.75 -0.02 0.71 16 22 C -0.18 -3.56 9.43 -26.69 -0.25 -3.81 16 23 C -0.20 -4.23 7.68 -26.69 -0.20 -4.44 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 25 H 0.07 1.50 6.15 -51.93 -0.32 1.18 16 26 H 0.01 0.23 7.67 -51.93 -0.40 -0.17 16 27 H 0.10 1.58 8.01 -51.93 -0.42 1.16 16 28 H 0.04 0.52 7.74 -51.92 -0.40 0.12 16 29 H 0.09 1.31 7.25 -51.93 -0.38 0.93 16 30 H 0.09 1.05 7.48 -51.93 -0.39 0.66 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 7.97 -51.93 -0.41 0.12 16 33 H 0.38 1.88 9.12 45.56 0.42 2.30 16 34 H 0.05 0.71 7.31 -51.93 -0.38 0.33 16 35 H 0.09 1.50 7.34 -51.93 -0.38 1.12 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.09 1.97 7.24 -51.93 -0.38 1.60 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -31.39 317.43 -5.85 -37.24 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.77 Total: 2.44 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.97 Total: -11.02 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.36 Total: -36.70 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.40 Total: -5.90 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 0.11 Total: -8.18 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.25 Total: 17.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.39 -5.85 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886813838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.037 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds