Wall clock time and date at job start Tue Mar 31 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99722 * 2 1 4 4 H 1.48496 * 109.47194 * 268.28089 * 3 2 1 5 5 H 1.48503 * 109.47188 * 28.28409 * 3 2 1 6 6 H 1.48502 * 109.46935 * 148.28223 * 3 2 1 7 7 C 1.37875 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99896 * 354.69610 * 7 2 1 9 9 C 1.50704 * 120.00047 * 174.70351 * 7 2 1 10 10 C 1.52998 * 115.55203 * 89.27665 * 9 7 2 11 11 N 1.46908 * 109.46630 * 54.76360 * 10 9 7 12 12 C 1.48528 * 111.00002 * 77.44072 * 11 10 9 13 13 C 1.54932 * 103.23084 * 159.71908 * 12 11 10 14 14 C 1.55041 * 102.99318 * 322.65073 * 13 12 11 15 15 C 1.52995 * 110.37492 * 262.99623 * 14 13 12 16 16 O 1.42899 * 109.47195 * 295.49522 * 15 14 13 17 17 C 1.53001 * 110.44930 * 140.69029 * 14 13 12 18 18 F 1.39895 * 109.47379 * 304.45900 * 17 14 13 19 19 F 1.39898 * 109.47292 * 64.46500 * 17 14 13 20 20 F 1.39903 * 109.46857 * 184.46300 * 17 14 13 21 21 C 1.47908 * 110.99617 * 194.83125 * 11 10 9 22 22 C 1.52997 * 117.49641 * 234.95286 * 9 7 2 23 23 C 1.53004 * 117.49507 * 303.61054 * 9 7 2 24 24 H 0.96996 * 119.99870 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47403 * 294.76801 * 10 9 7 26 26 H 1.08998 * 109.47328 * 174.76289 * 10 9 7 27 27 H 1.09000 * 110.66706 * 278.15258 * 12 11 10 28 28 H 1.09007 * 110.67154 * 41.28044 * 12 11 10 29 29 H 1.08995 * 110.72636 * 80.93829 * 13 12 11 30 30 H 1.08999 * 110.72838 * 204.22651 * 13 12 11 31 31 H 1.09005 * 109.47049 * 55.49288 * 15 14 13 32 32 H 1.09002 * 109.47397 * 175.49280 * 15 14 13 33 33 H 0.96700 * 114.00121 * 179.97438 * 16 15 14 34 34 H 1.08999 * 109.91607 * 333.51270 * 21 11 10 35 35 H 1.09001 * 109.91081 * 94.60814 * 21 11 10 36 36 H 1.09005 * 117.49760 * 214.99860 * 22 9 7 37 37 H 1.08995 * 117.49775 * 0.02562 * 22 9 7 38 38 H 1.08996 * 117.49939 * 359.97438 * 23 9 7 39 39 H 1.09002 * 117.49821 * 144.99914 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5330 2.0255 -1.3994 5 1 1.4288 2.6629 0.6634 6 1 3.5280 1.4510 0.7361 7 6 2.0046 -1.1940 -0.0005 8 1 1.4680 -2.1273 0.0855 9 6 3.5068 -1.1967 -0.1210 10 6 4.2749 -1.1174 1.1998 11 7 3.8328 -2.2000 2.0890 12 6 4.4383 -3.4966 1.6909 13 6 4.3119 -4.3558 2.9739 14 6 4.5781 -3.3315 4.1070 15 6 6.0393 -3.4006 4.5551 16 8 6.3000 -4.6807 5.1341 17 6 3.6454 -3.5907 5.2918 18 9 2.3173 -3.5716 4.8528 19 9 3.9347 -4.8412 5.8483 20 9 3.8314 -2.5960 6.2579 21 6 4.2758 -1.9582 3.4793 22 6 4.1235 -2.0273 -1.2482 23 6 4.1191 -0.4992 -1.3373 24 1 -0.4850 0.8400 0.0004 25 1 4.0823 -0.1556 1.6750 26 1 5.3426 -1.2196 1.0059 27 1 3.8794 -3.9463 0.8702 28 1 5.4853 -3.3646 1.4178 29 1 3.3089 -4.7732 3.0614 30 1 5.0621 -5.1465 2.9842 31 1 6.6908 -3.2519 3.6939 32 1 6.2301 -2.6220 5.2937 33 1 7.2098 -4.7957 5.4410 34 1 5.1757 -1.3431 3.4806 35 1 3.4848 -1.4598 4.0396 36 1 5.0766 -2.5174 -1.0488 37 1 3.4428 -2.5714 -1.9028 38 1 3.4355 -0.0387 -2.0505 39 1 5.0693 0.0161 -1.1965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886813838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:52 Heat of formation + Delta-G solvation = -185.978573 kcal Electronic energy + Delta-G solvation = -25561.769297 eV Core-core repulsion = 21475.547387 eV Total energy + Delta-G solvation = -4086.221910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.06871 -48.58846 -48.47067 -40.64619 -38.61085 -37.17996 -34.12476 -33.55251 -30.74927 -28.24432 -27.07819 -26.82073 -25.09309 -23.19652 -22.44504 -21.27669 -20.69210 -19.35544 -19.17723 -18.64051 -18.17194 -18.09098 -16.83079 -16.40037 -16.10522 -15.55137 -15.42213 -15.34844 -15.23314 -15.05387 -14.91864 -14.72560 -14.66707 -14.59677 -14.47640 -14.10445 -13.56197 -13.18581 -13.14449 -12.85798 -12.82478 -12.60759 -12.23308 -12.06596 -12.01791 -11.78769 -11.71740 -11.46523 -10.95999 -10.78451 -10.52389 -10.16236 -9.09263 -8.16033 -6.17416 1.39241 1.40850 1.51788 1.76264 2.45229 2.65250 2.73684 2.93359 3.05072 3.19266 3.33146 3.46368 3.64250 3.77309 4.02464 4.14068 4.23268 4.27998 4.37336 4.43554 4.46790 4.51150 4.57562 4.60566 4.74639 4.82093 4.90832 4.91466 5.02537 5.08696 5.16710 5.45013 5.57014 5.81298 6.10840 6.25901 6.51086 6.89241 6.89529 7.47942 9.01227 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.005390 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.173856 B = 5193.095808 C = 5686.479759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C 0.009 3.991 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.307 1.307 6 H -0.230 1.230 7 C -0.447 4.447 8 H 0.024 0.976 9 C -0.015 4.015 10 C 0.092 3.908 11 N -0.518 5.518 12 C 0.048 3.952 13 C -0.101 4.101 14 C -0.109 4.109 15 C 0.094 3.906 16 O -0.577 6.577 17 C 0.459 3.541 18 F -0.193 7.193 19 F -0.172 7.172 20 F -0.188 7.188 21 C 0.049 3.951 22 C -0.162 4.162 23 C -0.200 4.200 24 H 0.259 0.741 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.404 0.596 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.983 -6.396 9.444 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.235 1.235 6 H -0.153 1.153 7 C -0.485 4.485 8 H 0.043 0.957 9 C -0.017 4.017 10 C -0.036 4.036 11 N -0.242 5.242 12 C -0.079 4.079 13 C -0.139 4.139 14 C -0.111 4.111 15 C 0.016 3.984 16 O -0.386 6.386 17 C 0.405 3.595 18 F -0.175 7.175 19 F -0.154 7.154 20 F -0.170 7.170 21 C -0.079 4.079 22 C -0.199 4.199 23 C -0.237 4.237 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.255 0.745 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 17.635 -6.397 9.301 20.938 hybrid contribution 0.296 1.002 0.301 1.088 sum 17.931 -5.394 9.602 21.043 Atomic orbital electron populations 1.70081 1.08466 1.27384 1.54322 1.25809 0.95134 1.02773 0.94871 0.85922 0.79977 0.78735 0.78853 1.19697 1.23511 1.15335 1.20257 0.89443 0.92089 1.46681 0.95732 1.19274 0.92966 1.02043 0.87379 1.21910 0.95214 0.93567 0.92872 1.64551 1.56335 1.02968 1.00370 1.23217 0.98289 0.89299 0.97093 1.22613 1.03189 0.96724 0.91370 1.22870 0.95701 0.99632 0.92921 1.22100 0.90578 0.86671 0.99010 1.86519 1.36875 1.33317 1.81927 1.20532 0.80137 0.74171 0.84662 1.93198 1.38596 1.96225 1.89462 1.93193 1.93092 1.42213 1.86855 1.93136 1.95104 1.62124 1.66597 1.22797 1.00681 0.93460 0.90963 1.22845 1.01537 0.92332 1.03197 1.23030 1.01933 0.95949 1.02824 0.93230 0.92490 0.93108 0.90820 0.91347 0.91900 0.87191 0.89291 0.91207 0.74523 0.89950 0.91630 0.87544 0.91242 0.91437 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.86 13.96 21.45 0.30 -61.57 16 2 C 0.01 0.53 5.47 84.65 0.46 0.99 16 3 Si 0.94 44.55 24.99 68.60 1.71 46.27 16 4 H -0.27 -12.36 7.07 99.48 0.70 -11.66 16 5 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.23 -9.58 5.55 99.48 0.55 -9.03 16 7 C -0.45 -25.18 9.11 25.60 0.23 -24.95 16 8 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 9 C -0.02 -0.66 0.87 -52.93 -0.05 -0.70 16 10 C 0.09 3.31 4.46 86.30 0.39 3.70 16 11 N -0.52 -18.20 4.90 -883.01 -4.33 -22.53 16 12 C 0.05 1.36 5.95 86.65 0.52 1.87 16 13 C -0.10 -2.58 5.88 31.95 0.19 -2.39 16 14 C -0.11 -2.68 0.38 -51.15 -0.02 -2.69 16 15 C 0.09 1.52 5.55 71.98 0.40 1.92 16 16 O -0.58 -9.10 11.24 -148.98 -1.67 -10.77 16 17 C 0.46 13.32 2.07 71.98 0.15 13.47 16 18 F -0.19 -6.86 16.09 44.97 0.72 -6.14 16 19 F -0.17 -4.96 15.32 44.97 0.69 -4.27 16 20 F -0.19 -5.31 16.55 44.97 0.74 -4.57 16 21 C 0.05 1.40 5.58 86.44 0.48 1.88 16 22 C -0.16 -5.86 9.43 30.62 0.29 -5.57 16 23 C -0.20 -7.60 7.68 30.62 0.24 -7.37 16 24 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.06 2.19 6.15 -2.39 -0.01 2.17 16 26 H 0.05 1.45 7.67 -2.39 -0.02 1.44 16 27 H 0.07 2.37 8.01 -2.39 -0.02 2.35 16 28 H 0.07 1.52 7.74 -2.38 -0.02 1.50 16 29 H 0.06 1.90 7.25 -2.39 -0.02 1.88 16 30 H 0.11 2.30 7.48 -2.39 -0.02 2.28 16 31 H 0.09 1.05 8.14 -2.38 -0.02 1.04 16 32 H 0.07 0.98 7.97 -2.39 -0.02 0.96 16 33 H 0.40 2.27 9.12 -74.06 -0.68 1.59 16 34 H 0.08 1.86 7.31 -2.39 -0.02 1.84 16 35 H 0.07 2.16 7.34 -2.39 -0.02 2.15 16 36 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.07 2.86 7.24 -2.39 -0.02 2.84 16 39 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -72.45 317.43 1.68 -70.77 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.24 Total: 12.64 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 3.27 Total: -19.84 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -4.03 Total: -84.09 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -1.67 Total: -10.77 kcal Atomic # 9 Polarization: -17.13 SS G_CDS: 2.16 Total: -14.97 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.71 Total: 46.27 kcal Total: -72.45 1.68 -70.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886813838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.206 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds