Wall clock time and date at job start Tue Mar 31 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48495 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99921 * 3 2 1 6 6 H 1.48490 * 109.47068 * 60.00183 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46923 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46712 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 11 16 16 C 1.47021 * 125.65024 * 359.41182 * 15 13 12 17 17 C 1.54337 * 107.26261 * 178.85492 * 16 15 13 18 18 C 1.55155 * 103.02070 * 338.14065 * 17 16 15 19 19 H 1.08998 * 111.00779 * 277.23178 * 18 17 16 20 20 C 1.53005 * 111.00255 * 153.38435 * 18 17 16 21 21 F 1.39901 * 109.47044 * 307.80568 * 20 18 17 22 22 F 1.39903 * 109.46948 * 67.80378 * 20 18 17 23 23 F 1.39894 * 109.47009 * 187.80453 * 20 18 17 24 24 C 1.47426 * 125.64505 * 179.72939 * 15 13 12 25 25 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47650 * 60.00076 * 9 7 2 27 27 H 1.09000 * 109.46450 * 299.99219 * 9 7 2 28 28 H 1.08995 * 109.47108 * 59.99483 * 10 9 7 29 29 H 1.09001 * 109.46268 * 299.99107 * 10 9 7 30 30 H 1.09000 * 109.47849 * 59.99518 * 11 10 9 31 31 H 1.08998 * 109.47443 * 299.99385 * 11 10 9 32 32 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 33 33 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 34 34 H 1.08996 * 109.88140 * 298.39855 * 16 15 13 35 35 H 1.09001 * 109.87951 * 59.56582 * 16 15 13 36 36 H 1.09005 * 110.84402 * 219.67330 * 17 16 15 37 37 H 1.08996 * 110.51583 * 96.45968 * 17 16 15 38 38 H 1.09003 * 110.36374 * 322.92215 * 24 15 13 39 39 H 1.09000 * 110.37185 * 85.13705 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 6 2.4748 -6.1500 -0.0024 13 6 1.7213 -7.4551 -0.0023 14 8 0.5085 -7.4551 -0.0015 15 7 2.3953 -8.6222 0.0031 16 6 3.8584 -8.7669 -0.0031 17 6 4.1694 -10.2781 0.0361 18 6 2.8696 -10.8873 0.6248 19 1 2.8655 -10.8224 1.7129 20 6 2.6842 -12.3343 0.1634 21 9 2.7828 -12.3954 -1.2308 22 9 3.6760 -13.1373 0.7368 23 9 1.4243 -12.7931 0.5624 24 6 1.7875 -9.9653 0.0095 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5564 -0.8919 27 1 0.6242 -2.5574 0.8881 28 1 2.8715 -3.6046 0.8890 29 1 2.8726 -3.6038 -0.8911 30 1 0.8541 -5.0447 -0.8922 31 1 0.8535 -5.0450 0.8877 32 1 3.1015 -6.0924 0.8877 33 1 3.1015 -6.0918 -0.8923 34 1 4.2707 -8.3250 -0.9102 35 1 4.2827 -8.2801 0.8750 36 1 5.0200 -10.4823 0.6864 37 1 4.3518 -10.6568 -0.9696 38 1 0.8884 -9.9719 0.6258 39 1 1.5519 -10.2801 -1.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888020629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:09 Heat of formation + Delta-G solvation = -235.443009 kcal Electronic energy + Delta-G solvation = -23144.999063 eV Core-core repulsion = 19056.632214 eV Total energy + Delta-G solvation = -4088.366849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.15404 -48.65390 -48.63082 -41.18893 -38.77120 -36.61597 -34.63286 -33.57052 -31.43828 -30.50218 -27.99642 -26.49411 -24.60467 -23.56604 -22.16759 -21.70539 -20.37020 -19.62822 -19.18814 -18.73591 -18.41532 -17.98017 -17.03264 -16.69051 -16.44193 -15.97288 -15.65145 -15.55750 -15.13993 -15.06540 -14.82695 -14.77059 -14.58889 -14.51650 -14.22895 -14.04966 -13.66468 -13.51889 -13.26303 -13.24426 -12.84302 -12.59890 -12.41777 -12.28556 -12.16714 -12.13026 -11.94704 -11.36768 -11.35249 -11.15798 -10.83423 -10.55084 -9.79069 -8.18076 -6.30155 1.41305 1.42194 1.49006 1.55633 1.58112 1.98382 2.42616 2.66373 2.74875 2.96645 3.14886 3.47058 3.52259 3.76826 3.93151 4.03181 4.09093 4.13435 4.21123 4.48181 4.60718 4.64144 4.68903 4.74950 4.84288 4.85604 4.90318 5.04878 5.19556 5.20994 5.34878 5.38626 5.57962 5.79263 5.89244 6.26069 6.36220 6.88886 7.08297 7.39653 8.94458 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.049919 B = 0.002242 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.776398 B =12484.991257 C =12827.639180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.098 4.098 12 C -0.120 4.120 13 C 0.526 3.474 14 O -0.587 6.587 15 N -0.621 5.621 16 C 0.093 3.907 17 C -0.118 4.118 18 C -0.145 4.145 19 H 0.148 0.852 20 C 0.466 3.534 21 F -0.185 7.185 22 F -0.179 7.179 23 F -0.190 7.190 24 C 0.107 3.893 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.994 -27.701 1.149 31.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.159 4.159 13 C 0.317 3.683 14 O -0.467 6.467 15 N -0.356 5.356 16 C -0.028 4.028 17 C -0.155 4.155 18 C -0.165 4.165 19 H 0.166 0.834 20 C 0.412 3.588 21 F -0.166 7.166 22 F -0.160 7.160 23 F -0.172 7.172 24 C -0.016 4.016 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.188 -27.552 1.133 30.567 hybrid contribution -0.646 0.606 -0.155 0.899 sum 12.542 -26.946 0.978 29.738 Atomic orbital electron populations 1.70141 1.08106 1.27673 1.52056 1.26104 0.95776 1.03791 0.94859 0.85328 0.79253 0.78403 0.77625 1.17960 1.20573 1.20529 1.21786 0.93782 0.92156 1.49961 0.91454 1.19074 0.94740 0.93888 0.94287 1.21434 0.97764 0.92511 1.01448 1.21271 0.97541 0.93746 1.01017 1.21652 0.98806 0.88714 1.06756 1.20996 0.87277 0.85517 0.74500 1.90715 1.16428 1.87755 1.51789 1.48513 1.08974 1.04460 1.73610 1.22417 0.78214 0.97227 1.04934 1.22845 0.95621 0.93206 1.03867 1.23656 0.99782 0.87550 1.05484 0.83437 1.20283 0.73492 0.90046 0.74981 1.93181 1.95786 1.96980 1.30698 1.93206 1.61847 1.76476 1.84490 1.93201 1.42483 1.90915 1.90553 1.22092 0.96071 0.81976 1.01467 0.92885 0.99794 0.99738 0.91868 0.91962 0.93996 0.93859 0.86058 0.86289 0.88743 0.88252 0.85463 0.88755 0.90569 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.13 13.29 21.45 0.28 -58.85 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.94 4.97 29.85 0.15 1.09 16 10 C -0.09 -3.76 5.15 30.60 0.16 -3.60 16 11 C -0.10 -3.47 4.50 30.59 0.14 -3.33 16 12 C -0.12 -2.84 4.89 29.85 0.15 -2.69 16 13 C 0.53 14.13 7.85 87.66 0.69 14.81 16 14 O -0.59 -22.10 16.24 -3.04 -0.05 -22.15 16 15 N -0.62 -11.26 3.33 -811.77 -2.70 -13.96 16 16 C 0.09 0.78 6.49 86.73 0.56 1.34 16 17 C -0.12 -0.61 6.31 31.79 0.20 -0.41 16 18 C -0.14 -1.36 3.05 -9.40 -0.03 -1.39 16 19 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 20 C 0.47 5.75 2.77 71.98 0.20 5.95 16 21 F -0.18 -2.65 15.75 44.97 0.71 -1.94 16 22 F -0.18 -2.20 17.25 44.97 0.78 -1.42 16 23 F -0.19 -3.03 17.10 44.97 0.77 -2.27 16 24 C 0.11 1.78 6.14 86.85 0.53 2.32 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.13 0.05 8.14 -2.38 -0.02 0.03 16 37 H 0.09 0.50 7.27 -2.39 -0.02 0.48 16 38 H 0.08 1.53 8.04 -2.39 -0.02 1.51 16 39 H 0.07 1.30 7.54 -2.39 -0.02 1.28 16 Total: -1.00 -77.18 337.02 6.30 -70.89 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: 1.04 Total: -0.17 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 3.44 Total: -16.73 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -2.41 Total: -72.80 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 2.25 Total: -5.63 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.18 6.30 -70.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888020629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.557 kcal (2) G-P(sol) polarization free energy of solvation -77.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds