Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99397 * 2 1 4 4 H 1.48494 * 109.47225 * 269.99810 * 3 2 1 5 5 H 1.48495 * 109.47468 * 30.00348 * 3 2 1 6 6 H 1.48502 * 109.46700 * 150.00338 * 3 2 1 7 7 C 1.37877 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.46986 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46996 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46832 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46822 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00209 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00260 * 179.97438 * 13 12 11 16 16 C 1.47026 * 125.64513 * 0.04243 * 15 13 12 17 17 C 1.54323 * 107.26952 * 181.01901 * 16 15 13 18 18 C 1.55152 * 102.94259 * 22.19749 * 17 16 15 19 19 H 1.09005 * 111.04280 * 82.58088 * 18 17 16 20 20 C 1.53006 * 111.00482 * 206.42241 * 18 17 16 21 21 F 1.39897 * 109.47129 * 172.19488 * 20 18 17 22 22 F 1.39900 * 109.46764 * 292.19466 * 20 18 17 23 23 F 1.39895 * 109.46931 * 52.19209 * 20 18 17 24 24 C 1.47429 * 125.65145 * 179.97438 * 15 13 12 25 25 H 0.96995 * 120.00686 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46985 * 59.99966 * 9 7 2 27 27 H 1.09003 * 109.47159 * 300.00224 * 9 7 2 28 28 H 1.08999 * 109.47621 * 59.99946 * 10 9 7 29 29 H 1.09000 * 109.47447 * 299.99642 * 10 9 7 30 30 H 1.08998 * 109.46945 * 60.00065 * 11 10 9 31 31 H 1.08994 * 109.47161 * 299.99532 * 11 10 9 32 32 H 1.08999 * 109.47529 * 60.00029 * 12 11 10 33 33 H 1.09003 * 109.47276 * 299.99882 * 12 11 10 34 34 H 1.08997 * 109.88374 * 300.44040 * 16 15 13 35 35 H 1.09007 * 109.87964 * 61.60808 * 16 15 13 36 36 H 1.08995 * 110.72571 * 263.82715 * 17 16 15 37 37 H 1.09000 * 110.71921 * 140.55603 * 17 16 15 38 38 H 1.08999 * 110.36539 * 37.07345 * 24 15 13 39 39 H 1.08998 * 110.46122 * 274.79546 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0018 13 6 1.7214 -7.4550 -0.0018 14 8 0.5086 -7.4551 -0.0009 15 7 2.3953 -8.6222 -0.0029 16 6 3.8585 -8.7668 -0.0032 17 6 4.1694 -10.2782 -0.0307 18 6 2.8691 -10.8899 -0.6155 19 1 2.8634 -10.8301 -1.7039 20 6 2.6841 -12.3349 -0.1476 21 9 1.4238 -12.7955 -0.5433 22 9 3.6754 -13.1403 -0.7185 23 9 2.7842 -12.3900 1.2466 24 6 1.7875 -9.9654 -0.0025 25 1 -0.4851 0.8399 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6249 -2.5571 0.8897 28 1 2.8722 -3.6042 0.8894 29 1 2.8721 -3.6042 -0.8905 30 1 0.8542 -5.0446 -0.8914 31 1 0.8536 -5.0452 0.8886 32 1 3.1016 -6.0926 0.8881 33 1 3.1015 -6.0917 -0.8918 34 1 4.2783 -8.2858 -0.8865 35 1 4.2754 -8.3190 0.8989 36 1 4.3529 -10.6526 0.9764 37 1 5.0194 -10.4852 -0.6810 38 1 0.8876 -9.9747 -0.6174 39 1 1.5538 -10.2775 1.0154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888020630.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -214.793017 kcal Electronic energy + Delta-G solvation = -23144.055447 eV Core-core repulsion = 19056.584049 eV Total energy + Delta-G solvation = -4087.471398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.57561 -48.06677 -48.04553 -40.31580 -37.91406 -34.92333 -32.96919 -32.47460 -30.11641 -29.65400 -26.71360 -25.20469 -23.70038 -22.17632 -21.54247 -20.04044 -19.52284 -19.05712 -18.59285 -18.09023 -17.13220 -16.24805 -16.03645 -15.66957 -15.10504 -14.98188 -14.77951 -14.49791 -14.42578 -14.24707 -14.20653 -14.13312 -14.00313 -13.34773 -13.13638 -12.73049 -12.62051 -12.20122 -12.07602 -11.92471 -11.66665 -11.59344 -11.57712 -10.99098 -10.55490 -10.51317 -10.42431 -9.93003 -9.62373 -9.24124 -8.99254 -8.98674 -8.30765 -5.95493 -3.98143 2.11911 2.58307 2.71487 3.20602 3.28516 3.33689 3.39801 3.42811 3.49089 3.99866 4.08792 4.36096 4.48352 4.54487 4.62980 4.68090 5.04842 5.17303 5.22322 5.23482 5.29714 5.34483 5.39770 5.44273 5.76858 5.89947 6.11244 6.27936 6.52337 6.81906 6.99090 7.17502 7.24075 7.73684 7.89477 8.05518 8.07835 8.47385 9.09620 9.65530 11.15841 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.049939 B = 0.002242 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.547503 B =12485.365809 C =12828.244911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.105 4.105 12 C -0.132 4.132 13 C 0.531 3.469 14 O -0.528 6.528 15 N -0.627 5.627 16 C 0.103 3.897 17 C -0.126 4.126 18 C -0.157 4.157 19 H 0.131 0.869 20 C 0.465 3.535 21 F -0.179 7.179 22 F -0.180 7.180 23 F -0.179 7.179 24 C 0.114 3.886 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.448 -27.271 -0.847 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.172 4.172 13 C 0.321 3.679 14 O -0.403 6.403 15 N -0.364 5.364 16 C -0.020 4.020 17 C -0.164 4.164 18 C -0.177 4.177 19 H 0.149 0.851 20 C 0.411 3.589 21 F -0.161 7.161 22 F -0.162 7.162 23 F -0.160 7.160 24 C -0.009 4.009 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.573 -27.074 -0.825 28.728 hybrid contribution 0.496 0.549 0.037 0.741 sum 10.070 -26.525 -0.788 28.383 Atomic orbital electron populations 1.69974 1.06050 1.26529 1.50918 1.25047 0.94842 0.99242 0.95465 0.86607 0.79814 0.83597 0.78044 1.20709 1.21254 1.19929 1.21277 0.92970 0.91192 1.50419 0.92757 1.19096 0.94061 0.91261 0.97340 1.21644 0.99075 0.93915 1.00080 1.21486 0.97037 0.92690 1.03057 1.21792 1.00055 0.91327 1.04023 1.20908 0.87955 0.84212 0.74839 1.90735 1.13992 1.86841 1.48700 1.48551 1.06990 1.05142 1.75731 1.22038 0.81030 0.95720 1.03210 1.22774 0.95765 0.94684 1.03137 1.23717 1.00178 0.89168 1.04653 0.85110 1.20150 0.73931 0.89517 0.75341 1.93220 1.41624 1.90654 1.90569 1.93203 1.62040 1.76272 1.84643 1.93189 1.95786 1.96931 1.30141 1.22049 0.95440 0.81724 1.01669 0.93030 0.96577 0.96574 0.93445 0.93465 0.91736 0.91721 0.89033 0.89038 0.90303 0.90163 0.88973 0.88281 0.88873 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.13 -1.70 4.89 -27.88 -0.14 -1.84 16 13 C 0.53 7.30 7.85 -10.99 -0.09 7.21 16 14 O -0.53 -9.55 16.24 5.56 0.09 -9.46 16 15 N -0.63 -6.23 3.33 -170.50 -0.57 -6.80 16 16 C 0.10 0.62 6.49 -3.06 -0.02 0.60 16 17 C -0.13 -0.56 6.31 -24.90 -0.16 -0.72 16 18 C -0.16 -0.91 3.05 -88.46 -0.27 -1.18 16 19 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 20 C 0.47 3.23 2.77 37.16 0.10 3.33 16 21 F -0.18 -1.49 17.10 2.25 0.04 -1.45 16 22 F -0.18 -1.30 17.25 2.25 0.04 -1.26 16 23 F -0.18 -1.40 15.74 2.25 0.04 -1.36 16 24 C 0.11 0.99 6.14 -2.51 -0.02 0.98 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.40 7.27 -51.93 -0.38 0.03 16 37 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.90 8.04 -51.93 -0.42 0.49 16 39 H 0.08 0.69 7.53 -51.93 -0.39 0.30 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -33.93 337.01 -6.76 -40.69 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -5.80 Total: -6.17 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.39 Total: -9.30 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.17 Total: -33.57 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.11 Total: -4.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.93 -6.76 -40.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888020630.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.104 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds