Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99397 * 2 1 4 4 H 1.48494 * 109.47225 * 269.99810 * 3 2 1 5 5 H 1.48495 * 109.47468 * 30.00348 * 3 2 1 6 6 H 1.48502 * 109.46700 * 150.00338 * 3 2 1 7 7 C 1.37877 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.46986 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46996 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46832 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46822 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00209 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00260 * 179.97438 * 13 12 11 16 16 C 1.47026 * 125.64513 * 0.04243 * 15 13 12 17 17 C 1.54323 * 107.26952 * 181.01901 * 16 15 13 18 18 C 1.55152 * 102.94259 * 22.19749 * 17 16 15 19 19 H 1.09005 * 111.04280 * 82.58088 * 18 17 16 20 20 C 1.53006 * 111.00482 * 206.42241 * 18 17 16 21 21 F 1.39897 * 109.47129 * 172.19488 * 20 18 17 22 22 F 1.39900 * 109.46764 * 292.19466 * 20 18 17 23 23 F 1.39895 * 109.46931 * 52.19209 * 20 18 17 24 24 C 1.47429 * 125.65145 * 179.97438 * 15 13 12 25 25 H 0.96995 * 120.00686 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46985 * 59.99966 * 9 7 2 27 27 H 1.09003 * 109.47159 * 300.00224 * 9 7 2 28 28 H 1.08999 * 109.47621 * 59.99946 * 10 9 7 29 29 H 1.09000 * 109.47447 * 299.99642 * 10 9 7 30 30 H 1.08998 * 109.46945 * 60.00065 * 11 10 9 31 31 H 1.08994 * 109.47161 * 299.99532 * 11 10 9 32 32 H 1.08999 * 109.47529 * 60.00029 * 12 11 10 33 33 H 1.09003 * 109.47276 * 299.99882 * 12 11 10 34 34 H 1.08997 * 109.88374 * 300.44040 * 16 15 13 35 35 H 1.09007 * 109.87964 * 61.60808 * 16 15 13 36 36 H 1.08995 * 110.72571 * 263.82715 * 17 16 15 37 37 H 1.09000 * 110.71921 * 140.55603 * 17 16 15 38 38 H 1.08999 * 110.36539 * 37.07345 * 24 15 13 39 39 H 1.08998 * 110.46122 * 274.79546 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0018 13 6 1.7214 -7.4550 -0.0018 14 8 0.5086 -7.4551 -0.0009 15 7 2.3953 -8.6222 -0.0029 16 6 3.8585 -8.7668 -0.0032 17 6 4.1694 -10.2782 -0.0307 18 6 2.8691 -10.8899 -0.6155 19 1 2.8634 -10.8301 -1.7039 20 6 2.6841 -12.3349 -0.1476 21 9 1.4238 -12.7955 -0.5433 22 9 3.6754 -13.1403 -0.7185 23 9 2.7842 -12.3900 1.2466 24 6 1.7875 -9.9654 -0.0025 25 1 -0.4851 0.8399 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6249 -2.5571 0.8897 28 1 2.8722 -3.6042 0.8894 29 1 2.8721 -3.6042 -0.8905 30 1 0.8542 -5.0446 -0.8914 31 1 0.8536 -5.0452 0.8886 32 1 3.1016 -6.0926 0.8881 33 1 3.1015 -6.0917 -0.8918 34 1 4.2783 -8.2858 -0.8865 35 1 4.2754 -8.3190 0.8989 36 1 4.3529 -10.6526 0.9764 37 1 5.0194 -10.4852 -0.6810 38 1 0.8876 -9.9747 -0.6174 39 1 1.5538 -10.2775 1.0154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888020630.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -235.381917 kcal Electronic energy + Delta-G solvation = -23144.948249 eV Core-core repulsion = 19056.584049 eV Total energy + Delta-G solvation = -4088.364200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.15477 -48.65436 -48.63134 -41.18882 -38.77173 -36.61579 -34.63139 -33.56974 -31.43850 -30.50176 -27.99517 -26.49326 -24.60315 -23.56535 -22.16814 -21.70533 -20.37001 -19.62859 -19.18800 -18.73643 -18.41209 -17.97994 -17.03261 -16.69136 -16.44513 -15.97093 -15.65159 -15.55812 -15.14068 -15.06586 -14.82683 -14.77082 -14.58456 -14.51145 -14.22751 -14.04981 -13.66396 -13.52516 -13.26055 -13.24674 -12.81421 -12.59895 -12.41883 -12.31326 -12.15891 -12.13455 -11.94764 -11.36584 -11.35136 -11.17084 -10.83575 -10.54161 -9.79060 -8.17876 -6.30071 1.41228 1.43509 1.49227 1.54537 1.57916 1.98410 2.42737 2.66352 2.74898 2.96661 3.14934 3.47061 3.52108 3.76793 3.93207 4.03232 4.09375 4.13388 4.20909 4.48176 4.60695 4.64125 4.68836 4.74995 4.84272 4.85587 4.90293 5.04920 5.19555 5.20957 5.34906 5.38571 5.57816 5.79272 5.89219 6.26084 6.36243 6.88789 7.08310 7.39667 8.94442 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.049939 B = 0.002242 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.547503 B =12485.365809 C =12828.244911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.098 4.098 12 C -0.120 4.120 13 C 0.526 3.474 14 O -0.587 6.587 15 N -0.621 5.621 16 C 0.093 3.907 17 C -0.118 4.118 18 C -0.145 4.145 19 H 0.148 0.852 20 C 0.466 3.534 21 F -0.190 7.190 22 F -0.179 7.179 23 F -0.185 7.185 24 C 0.107 3.893 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.017 1.017 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.991 -27.688 -1.145 31.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.159 4.159 13 C 0.317 3.683 14 O -0.467 6.467 15 N -0.356 5.356 16 C -0.028 4.028 17 C -0.155 4.155 18 C -0.165 4.165 19 H 0.166 0.834 20 C 0.412 3.588 21 F -0.172 7.172 22 F -0.160 7.160 23 F -0.166 7.166 24 C -0.016 4.016 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.182 -27.538 -1.122 30.551 hybrid contribution -0.635 0.599 0.143 0.885 sum 12.547 -26.939 -0.978 29.733 Atomic orbital electron populations 1.70135 1.08107 1.27743 1.51978 1.26107 0.95773 1.03787 0.94836 0.85378 0.78686 0.78035 0.78523 1.19697 1.21066 1.18221 1.21760 0.93786 0.92171 1.50100 0.91447 1.19065 0.94733 0.93875 0.94279 1.21434 0.97764 0.92511 1.01448 1.21272 0.97542 0.93747 1.01016 1.21650 0.98804 0.88711 1.06757 1.20997 0.87277 0.85518 0.74500 1.90715 1.16431 1.87755 1.51790 1.48513 1.08974 1.04454 1.73612 1.22416 0.78211 0.97222 1.04945 1.22843 0.95606 0.93172 1.03909 1.23669 0.99802 0.87572 1.05451 0.83439 1.20286 0.73490 0.90007 0.75028 1.93202 1.42450 1.90862 1.90643 1.93205 1.61887 1.76342 1.84585 1.93179 1.95775 1.96987 1.30704 1.22094 0.96076 0.81951 1.01481 0.92881 0.99743 0.99809 0.91971 0.91859 0.93858 0.93997 0.86297 0.86047 0.88235 0.88748 0.88730 0.85477 0.90575 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.16 13.29 21.45 0.28 -58.88 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.96 4.97 29.84 0.15 1.11 16 10 C -0.09 -3.76 5.15 30.59 0.16 -3.60 16 11 C -0.10 -3.47 4.50 30.60 0.14 -3.33 16 12 C -0.12 -2.83 4.89 29.85 0.15 -2.69 16 13 C 0.53 14.13 7.85 87.66 0.69 14.82 16 14 O -0.59 -22.11 16.24 -3.04 -0.05 -22.16 16 15 N -0.62 -11.26 3.33 -811.73 -2.70 -13.96 16 16 C 0.09 0.78 6.49 86.73 0.56 1.34 16 17 C -0.12 -0.61 6.31 31.78 0.20 -0.41 16 18 C -0.14 -1.36 3.05 -9.39 -0.03 -1.39 16 19 H 0.15 0.94 8.14 -2.38 -0.02 0.92 16 20 C 0.47 5.75 2.77 71.98 0.20 5.95 16 21 F -0.19 -3.04 17.10 44.97 0.77 -2.27 16 22 F -0.18 -2.20 17.25 44.97 0.78 -1.42 16 23 F -0.18 -2.65 15.74 44.97 0.71 -1.94 16 24 C 0.11 1.79 6.14 86.86 0.53 2.32 16 25 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 32 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.09 0.50 7.27 -2.39 -0.02 0.49 16 37 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 1.53 8.04 -2.39 -0.02 1.51 16 39 H 0.07 1.30 7.53 -2.39 -0.02 1.28 16 Total: -1.00 -77.18 337.01 6.30 -70.88 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: 1.04 Total: -0.06 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 3.44 Total: -16.78 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -2.42 Total: -72.83 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.05 Total: -22.16 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 2.25 Total: -5.64 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -77.18 6.30 -70.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888020630.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.498 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds