Wall clock time and date at job start Tue Mar 31 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38834 * 120.35286 * 2 1 4 4 C 1.38382 * 118.48218 * 179.75262 * 3 2 1 5 5 C 1.38922 * 119.11201 * 0.51010 * 4 3 2 6 6 O 1.35676 * 119.68320 * 179.75588 * 5 4 3 7 7 C 1.42903 * 116.99635 * 179.72662 * 6 5 4 8 8 C 1.53000 * 109.46726 * 179.97438 * 7 6 5 9 9 O 1.45194 * 109.47550 * 64.99819 * 8 7 6 10 10 C 1.34227 * 117.00087 * 179.97438 * 9 8 7 11 11 O 1.20821 * 120.00216 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99644 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46903 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47422 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47341 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99739 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99906 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99576 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47590 * 89.99599 * 19 17 15 21 21 H 1.48499 * 109.47177 * 210.00232 * 19 17 15 22 22 H 1.48508 * 109.47384 * 329.99896 * 19 17 15 23 23 N 1.32244 * 120.62801 * 359.47444 * 5 4 3 24 24 C 1.31970 * 121.65385 * 0.28040 * 23 5 4 25 25 H 1.09004 * 109.47184 * 269.98017 * 1 2 3 26 26 H 1.09006 * 109.47419 * 29.98104 * 1 2 3 27 27 H 1.08999 * 109.46912 * 149.97986 * 1 2 3 28 28 H 1.07999 * 120.75573 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.44476 * 180.25531 * 4 3 2 30 30 H 1.09002 * 109.47382 * 59.99725 * 7 6 5 31 31 H 1.09001 * 109.46938 * 299.99712 * 7 6 5 32 32 H 1.09002 * 109.46642 * 184.99995 * 8 7 6 33 33 H 1.09002 * 109.47069 * 304.99524 * 8 7 6 34 34 H 1.08999 * 109.47657 * 300.00243 * 12 10 9 35 35 H 1.08994 * 109.47412 * 60.00676 * 12 10 9 36 36 H 1.09007 * 109.47071 * 300.00251 * 13 12 10 37 37 H 1.09004 * 109.47034 * 60.00030 * 13 12 10 38 38 H 1.08998 * 109.46761 * 300.00622 * 14 13 12 39 39 H 1.09001 * 109.46550 * 60.00013 * 14 13 12 40 40 H 0.96998 * 119.99145 * 179.97438 * 18 17 15 41 41 H 1.07995 * 119.58518 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1980 0.0000 4 6 3.5916 1.1529 0.0053 5 6 4.2275 -0.0822 -0.0005 6 8 5.5831 -0.1400 -0.0005 7 6 6.1770 -1.4398 -0.0004 8 6 7.7009 -1.3041 -0.0010 9 8 8.1323 -0.6846 1.2393 10 6 9.4512 -0.4931 1.3983 11 8 10.2199 -0.8313 0.5296 12 6 9.9732 0.1450 2.6598 13 6 11.4981 0.2467 2.5867 14 6 12.0282 0.8939 3.8677 15 6 13.5302 0.9934 3.7959 16 1 14.0542 0.6317 2.9236 17 6 14.2354 1.5464 4.8438 18 7 15.5461 1.6327 4.7813 19 14 13.3289 2.1714 6.3528 20 1 13.2012 1.0730 7.3440 21 1 14.0881 3.2964 6.9556 22 1 11.9767 2.6419 5.9585 23 7 3.5242 -1.2022 -0.0004 24 6 2.2046 -1.1912 -0.0004 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6867 2.1436 0.0004 29 1 4.1689 2.0656 0.0096 30 1 5.8606 -1.9839 -0.8904 31 1 5.8606 -1.9838 0.8896 32 1 8.1535 -2.2916 -0.0906 33 1 8.0102 -0.6849 -0.8432 34 1 9.5476 1.1429 2.7654 35 1 9.6902 -0.4634 3.5187 36 1 11.9241 -0.7511 2.4809 37 1 11.7809 0.8553 1.7277 38 1 11.6022 1.8915 3.9739 39 1 11.7454 0.2848 4.7263 40 1 16.0421 2.0221 5.5184 41 1 1.6636 -2.1259 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893705984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:10 Heat of formation + Delta-G solvation = -108.351655 kcal Electronic energy + Delta-G solvation = -21777.312278 eV Core-core repulsion = 18236.313264 eV Total energy + Delta-G solvation = -3540.999014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00381 -40.29880 -38.47493 -36.51179 -34.41142 -33.60950 -32.45403 -32.13573 -30.76213 -28.58404 -27.07540 -24.86095 -24.03929 -22.73080 -22.24102 -20.96058 -19.87931 -18.91506 -17.56782 -17.39007 -16.75738 -16.57412 -16.20817 -15.80053 -15.57559 -14.99113 -14.57338 -14.31090 -14.24763 -13.97286 -13.55361 -13.28010 -12.96764 -12.93399 -12.69345 -12.58998 -12.26339 -12.10463 -11.83403 -11.69522 -11.28047 -11.02226 -10.80877 -10.70271 -10.33451 -10.25200 -9.98894 -9.94866 -9.75499 -9.65681 -9.17273 -8.70168 -8.51972 -6.01777 -4.00025 0.76426 0.87092 2.43714 2.65817 2.73364 3.32094 3.37182 3.39453 3.42429 3.91727 4.36496 4.46711 4.47842 4.51028 4.55837 4.72364 4.81311 4.89191 5.07013 5.09808 5.12983 5.26133 5.31481 5.34788 5.39525 5.46578 5.52361 5.55114 5.56598 5.86724 5.97689 6.07228 6.47900 6.48636 6.61627 6.86478 6.91695 7.31790 7.41078 7.47140 7.80189 7.95967 8.56936 9.04212 9.59957 11.11736 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.002173 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.440737 B =12883.430124 C =13624.845039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.182 4.182 3 C -0.042 4.042 4 C -0.185 4.185 5 C 0.320 3.680 6 O -0.298 6.298 7 C 0.075 3.925 8 C 0.064 3.936 9 O -0.357 6.357 10 C 0.461 3.539 11 O -0.506 6.506 12 C -0.114 4.114 13 C -0.092 4.092 14 C -0.014 4.014 15 C -0.520 4.520 16 H 0.073 0.927 17 C 0.065 3.935 18 N -0.903 5.903 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 N -0.539 5.539 24 C 0.139 3.861 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.263 0.737 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.810 -4.386 -10.434 34.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C -0.067 4.067 4 C -0.205 4.205 5 C 0.141 3.859 6 O -0.205 6.205 7 C 0.000 4.000 8 C -0.010 4.010 9 O -0.275 6.275 10 C 0.305 3.695 11 O -0.393 6.393 12 C -0.152 4.152 13 C -0.130 4.130 14 C -0.051 4.051 15 C -0.558 4.558 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.190 1.190 23 N -0.263 5.263 24 C -0.017 4.017 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -31.751 -5.030 -10.628 33.858 hybrid contribution -0.717 0.824 0.698 1.296 sum -32.468 -4.206 -9.930 34.212 Atomic orbital electron populations 1.20630 0.89995 1.02977 1.02478 1.20771 0.97768 0.93985 1.05896 1.21329 0.92769 0.98496 0.94126 1.21128 0.94768 0.97106 1.07532 1.19852 0.84127 0.89946 0.91962 1.86322 1.15031 1.31685 1.87415 1.22724 0.90313 0.83210 1.03737 1.23081 0.92257 0.99481 0.86182 1.86593 1.27018 1.73644 1.40250 1.24310 0.79592 0.75806 0.89825 1.90660 1.57510 1.47535 1.43606 1.21706 0.99612 1.01813 0.92065 1.21398 0.88609 1.02204 1.00790 1.19602 0.97355 0.95550 0.92638 1.21129 0.89702 1.40196 1.04814 0.90906 1.25047 0.94745 0.95413 0.98406 1.69921 1.06102 1.45662 1.32540 0.86762 0.80336 0.78784 0.83290 1.20302 1.21413 1.18960 1.67339 1.09741 1.30057 1.19141 1.22303 0.88074 0.97793 0.93517 0.91120 0.91448 0.91345 0.84150 0.83877 0.89367 0.90242 0.88858 0.90184 0.88046 0.88102 0.91830 0.91788 0.96389 0.96839 0.92755 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.38 10.03 36.00 0.36 -0.02 16 2 C -0.18 -1.19 5.90 -104.47 -0.62 -1.81 16 3 C -0.04 -0.29 9.85 -39.31 -0.39 -0.67 16 4 C -0.18 -1.64 10.04 -39.28 -0.39 -2.04 16 5 C 0.32 3.49 7.49 -17.12 -0.13 3.37 16 6 O -0.30 -3.55 10.09 -22.30 -0.22 -3.77 16 7 C 0.08 0.76 5.70 37.16 0.21 0.97 16 8 C 0.06 0.73 5.84 37.16 0.22 0.95 16 9 O -0.36 -5.10 10.19 -42.02 -0.43 -5.53 16 10 C 0.46 7.50 7.96 36.01 0.29 7.79 16 11 O -0.51 -9.60 15.73 -18.75 -0.29 -9.90 16 12 C -0.11 -1.83 5.81 -27.88 -0.16 -1.99 16 13 C -0.09 -1.89 4.44 -26.73 -0.12 -2.01 16 14 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 15 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 16 H 0.07 2.29 7.99 -52.49 -0.42 1.88 16 17 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 19 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 N -0.54 -5.56 9.22 -13.33 -0.12 -5.68 16 24 C 0.14 1.07 10.85 -17.56 -0.19 0.88 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 27 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 28 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 33 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 39 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -34.69 355.03 -7.34 -42.03 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.26 Total: -3.44 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.46 Total: -8.68 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.65 Total: -33.16 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.95 Total: -19.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.69 -7.34 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893705984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.321 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds