Wall clock time and date at job start Tue Mar 31 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38834 * 120.35286 * 2 1 4 4 C 1.38382 * 118.48218 * 179.75262 * 3 2 1 5 5 C 1.38922 * 119.11201 * 0.51010 * 4 3 2 6 6 O 1.35676 * 119.68320 * 179.75588 * 5 4 3 7 7 C 1.42903 * 116.99635 * 179.72662 * 6 5 4 8 8 C 1.53000 * 109.46726 * 179.97438 * 7 6 5 9 9 O 1.45194 * 109.47550 * 64.99819 * 8 7 6 10 10 C 1.34227 * 117.00087 * 179.97438 * 9 8 7 11 11 O 1.20821 * 120.00216 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99644 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46903 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47422 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47341 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99739 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99906 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99576 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47590 * 89.99599 * 19 17 15 21 21 H 1.48499 * 109.47177 * 210.00232 * 19 17 15 22 22 H 1.48508 * 109.47384 * 329.99896 * 19 17 15 23 23 N 1.32244 * 120.62801 * 359.47444 * 5 4 3 24 24 C 1.31970 * 121.65385 * 0.28040 * 23 5 4 25 25 H 1.09004 * 109.47184 * 269.98017 * 1 2 3 26 26 H 1.09006 * 109.47419 * 29.98104 * 1 2 3 27 27 H 1.08999 * 109.46912 * 149.97986 * 1 2 3 28 28 H 1.07999 * 120.75573 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.44476 * 180.25531 * 4 3 2 30 30 H 1.09002 * 109.47382 * 59.99725 * 7 6 5 31 31 H 1.09001 * 109.46938 * 299.99712 * 7 6 5 32 32 H 1.09002 * 109.46642 * 184.99995 * 8 7 6 33 33 H 1.09002 * 109.47069 * 304.99524 * 8 7 6 34 34 H 1.08999 * 109.47657 * 300.00243 * 12 10 9 35 35 H 1.08994 * 109.47412 * 60.00676 * 12 10 9 36 36 H 1.09007 * 109.47071 * 300.00251 * 13 12 10 37 37 H 1.09004 * 109.47034 * 60.00030 * 13 12 10 38 38 H 1.08998 * 109.46761 * 300.00622 * 14 13 12 39 39 H 1.09001 * 109.46550 * 60.00013 * 14 13 12 40 40 H 0.96998 * 119.99145 * 179.97438 * 18 17 15 41 41 H 1.07995 * 119.58518 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1980 0.0000 4 6 3.5916 1.1529 0.0053 5 6 4.2275 -0.0822 -0.0005 6 8 5.5831 -0.1400 -0.0005 7 6 6.1770 -1.4398 -0.0004 8 6 7.7009 -1.3041 -0.0010 9 8 8.1323 -0.6846 1.2393 10 6 9.4512 -0.4931 1.3983 11 8 10.2199 -0.8313 0.5296 12 6 9.9732 0.1450 2.6598 13 6 11.4981 0.2467 2.5867 14 6 12.0282 0.8939 3.8677 15 6 13.5302 0.9934 3.7959 16 1 14.0542 0.6317 2.9236 17 6 14.2354 1.5464 4.8438 18 7 15.5461 1.6327 4.7813 19 14 13.3289 2.1714 6.3528 20 1 13.2012 1.0730 7.3440 21 1 14.0881 3.2964 6.9556 22 1 11.9767 2.6419 5.9585 23 7 3.5242 -1.2022 -0.0004 24 6 2.2046 -1.1912 -0.0004 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6867 2.1436 0.0004 29 1 4.1689 2.0656 0.0096 30 1 5.8606 -1.9839 -0.8904 31 1 5.8606 -1.9838 0.8896 32 1 8.1535 -2.2916 -0.0906 33 1 8.0102 -0.6849 -0.8432 34 1 9.5476 1.1429 2.7654 35 1 9.6902 -0.4634 3.5187 36 1 11.9241 -0.7511 2.4809 37 1 11.7809 0.8553 1.7277 38 1 11.6022 1.8915 3.9739 39 1 11.7454 0.2848 4.7263 40 1 16.0421 2.0221 5.5184 41 1 1.6636 -2.1259 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893705984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:10 Heat of formation + Delta-G solvation = -130.806530 kcal Electronic energy + Delta-G solvation = -21778.285994 eV Core-core repulsion = 18236.313264 eV Total energy + Delta-G solvation = -3541.972730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.73075 -41.44745 -39.22137 -37.72275 -36.19491 -34.22299 -34.13580 -33.06464 -31.65636 -30.28089 -27.56721 -26.21513 -25.11783 -23.57493 -22.93108 -22.44805 -21.43640 -19.62976 -18.96947 -18.72212 -18.07429 -17.73621 -17.22820 -16.85259 -16.19635 -16.10756 -15.92940 -15.44603 -15.09054 -14.92193 -14.76889 -14.34395 -14.06022 -13.96074 -13.83466 -13.52907 -13.27330 -13.17429 -12.90880 -12.68955 -12.55396 -12.53029 -12.08840 -11.90811 -11.78027 -11.74852 -11.52320 -11.42625 -11.29259 -10.82658 -10.74662 -10.60382 -9.30827 -8.27507 -6.33056 0.16975 0.29529 1.16650 1.39719 1.42513 1.54601 1.60316 1.95297 2.39323 2.76948 3.07773 3.32323 3.58954 3.76899 3.91367 3.96053 4.04130 4.05595 4.06905 4.15019 4.18008 4.32490 4.43885 4.52079 4.67596 4.68562 4.84660 4.89048 4.91054 4.91175 4.98061 5.01271 5.21365 5.30265 5.38204 5.52376 5.56840 5.58023 5.67515 6.22171 6.29963 6.71578 6.75386 6.84476 7.31250 8.89815 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.002173 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.440737 B =12883.430124 C =13624.845039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.175 4.175 3 C -0.042 4.042 4 C -0.197 4.197 5 C 0.289 3.711 6 O -0.319 6.319 7 C 0.083 3.917 8 C 0.061 3.939 9 O -0.356 6.356 10 C 0.468 3.532 11 O -0.541 6.541 12 C -0.106 4.106 13 C -0.085 4.085 14 C -0.011 4.011 15 C -0.539 4.539 16 H 0.023 0.977 17 C -0.002 4.002 18 N -0.955 5.955 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.237 1.237 23 N -0.558 5.558 24 C 0.124 3.876 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.169 0.831 29 H 0.148 0.852 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.266 0.734 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.846 -3.929 -9.188 38.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.178 4.178 3 C -0.067 4.067 4 C -0.218 4.218 5 C 0.111 3.889 6 O -0.227 6.227 7 C 0.008 3.992 8 C -0.013 4.013 9 O -0.272 6.272 10 C 0.313 3.687 11 O -0.431 6.431 12 C -0.143 4.143 13 C -0.123 4.123 14 C -0.048 4.048 15 C -0.577 4.577 16 H 0.041 0.959 17 C -0.198 4.198 18 N -0.596 5.596 19 Si 0.781 3.219 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.160 1.160 23 N -0.282 5.282 24 C -0.031 4.031 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.187 0.813 29 H 0.165 0.835 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -35.834 -4.584 -9.398 37.328 hybrid contribution 0.487 0.637 0.191 0.824 sum -35.347 -3.947 -9.207 36.739 Atomic orbital electron populations 1.20702 0.87685 1.04179 1.03322 1.21152 0.99377 0.93409 1.03827 1.21720 0.92036 0.99983 0.92992 1.21356 0.95878 0.96688 1.07874 1.20107 0.83803 0.90936 0.94005 1.86270 1.16048 1.32305 1.88088 1.22684 0.89095 0.83057 1.04374 1.23329 0.93284 0.99841 0.84818 1.86565 1.25593 1.73521 1.41562 1.24267 0.79987 0.75066 0.89380 1.90657 1.58472 1.49187 1.44811 1.21557 0.95968 1.03847 0.92963 1.21160 0.92157 1.00433 0.98543 1.19548 0.93610 0.96890 0.94753 1.21521 0.92851 1.40006 1.03344 0.95893 1.26162 0.95613 0.95536 1.02522 1.70100 1.08360 1.47045 1.34078 0.85531 0.79886 0.78338 0.78106 1.18931 1.21252 1.15956 1.67302 1.10986 1.30163 1.19742 1.22818 0.87499 0.99458 0.93365 0.90287 0.90286 0.90196 0.81349 0.83461 0.87831 0.90378 0.87538 0.90556 0.85663 0.85349 0.93578 0.93744 0.94961 0.95002 0.92512 0.80226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 10.03 71.24 0.71 0.28 16 2 C -0.18 -1.89 5.90 -19.77 -0.12 -2.01 16 3 C -0.04 -0.49 9.85 22.45 0.22 -0.27 16 4 C -0.20 -3.36 10.04 22.47 0.23 -3.13 16 5 C 0.29 6.22 7.49 84.79 0.63 6.86 16 6 O -0.32 -7.57 10.09 -86.53 -0.87 -8.44 16 7 C 0.08 1.63 5.70 71.98 0.41 2.04 16 8 C 0.06 1.35 5.84 71.98 0.42 1.77 16 9 O -0.36 -9.72 10.19 -48.74 -0.50 -10.21 16 10 C 0.47 14.77 7.96 71.24 0.57 15.34 16 11 O -0.54 -20.68 15.73 21.98 0.35 -20.33 16 12 C -0.11 -3.16 5.81 29.85 0.17 -2.99 16 13 C -0.09 -3.46 4.44 30.60 0.14 -3.33 16 14 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 15 C -0.54 -32.11 9.66 25.60 0.25 -31.86 16 16 H 0.02 1.53 7.99 -2.91 -0.02 1.50 16 17 C 0.00 -0.13 5.47 84.66 0.46 0.33 16 18 N -0.96 -61.42 13.96 21.45 0.30 -61.12 16 19 Si 0.96 43.94 27.47 68.60 1.88 45.83 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 23 N -0.56 -11.08 9.22 -308.95 -2.85 -13.93 16 24 C 0.12 1.72 10.85 84.63 0.92 2.63 16 25 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.08 0.19 8.09 -2.38 -0.02 0.17 16 27 H 0.08 0.18 8.09 -2.39 -0.02 0.16 16 28 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.10 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.11 2.07 8.13 -2.39 -0.02 2.05 16 33 H 0.08 1.76 8.13 -2.39 -0.02 1.74 16 34 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.05 2.00 8.10 -2.38 -0.02 1.98 16 37 H 0.04 1.94 8.10 -2.38 -0.02 1.92 16 38 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 39 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 40 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 41 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -77.92 355.03 4.40 -73.52 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.95 Total: 9.41 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.14 Total: -14.72 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -2.55 Total: -75.05 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.02 Total: -38.99 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -77.92 4.40 -73.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893705984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.290 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds