Wall clock time and date at job start Tue Mar 31 2020 07:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47122 * 2 1 4 4 C 1.53001 * 109.47122 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47591 * 180.02562 * 4 3 2 6 6 O 1.41599 * 120.00064 * 255.00392 * 5 4 3 7 7 C 1.34783 * 119.99931 * 74.99763 * 5 4 3 8 8 O 1.21281 * 119.99796 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99878 * 180.02562 * 7 5 4 10 10 C 1.50699 * 109.46970 * 180.02562 * 9 7 5 11 11 C 1.38328 * 119.96224 * 270.02075 * 10 9 7 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99515 * 10 9 7 25 25 H 1.09001 * 109.47056 * 59.99875 * 1 2 3 26 26 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46811 * 300.00311 * 1 2 3 28 28 H 1.09005 * 109.47047 * 240.00185 * 2 1 3 29 29 H 1.09001 * 109.47056 * 120.00124 * 2 1 3 30 30 H 1.08995 * 109.46977 * 60.00319 * 3 2 1 31 31 H 1.08993 * 109.47505 * 299.99849 * 3 2 1 32 32 H 1.09001 * 109.47267 * 59.99459 * 4 3 2 33 33 H 1.09001 * 109.47056 * 300.00124 * 4 3 2 34 34 H 0.96694 * 113.99726 * 359.97438 * 6 5 4 35 35 H 1.08996 * 109.47386 * 59.99804 * 9 7 5 36 36 H 1.08997 * 109.47038 * 299.99640 * 9 7 5 37 37 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 38 38 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 40 40 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0585 2.8236 0.0013 6 8 4.5942 3.3857 -1.1829 7 6 3.9978 3.5594 1.1289 8 8 3.5393 3.0778 2.1432 9 6 4.4997 4.9803 1.1294 10 6 4.3205 5.5759 2.5021 11 6 3.1467 6.2342 2.8217 12 6 2.9787 6.7824 4.0800 13 6 3.9805 6.6684 5.0240 14 6 5.1623 6.0131 4.7044 15 8 6.1512 5.9047 5.6281 16 6 5.9737 6.5574 6.7944 17 1 5.0417 7.0659 6.9922 18 6 6.9878 6.5759 7.7398 19 7 6.8147 7.2133 8.8776 20 14 8.6001 5.6970 7.3973 21 1 9.5421 6.6322 6.7317 22 1 9.1897 5.2280 8.6771 23 1 8.3503 4.5319 6.5111 24 6 5.3280 5.4634 3.4396 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9564 -0.8899 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 4.5962 2.7825 -1.9385 35 1 3.9358 5.5651 0.4028 36 1 5.5567 4.9924 0.8637 37 1 2.3601 6.3208 2.0867 38 1 2.0612 7.2962 4.3265 39 1 3.8466 7.0922 6.0083 40 1 7.5240 7.2259 9.5391 41 1 6.2444 4.9497 3.1893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904212316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:29 Heat of formation + Delta-G solvation = -45.453177 kcal Electronic energy + Delta-G solvation = -22876.996398 eV Core-core repulsion = 19338.724867 eV Total energy + Delta-G solvation = -3538.271531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02751 -38.96639 -37.20464 -36.45669 -35.61513 -32.38845 -32.31576 -32.08881 -29.53564 -29.02945 -26.88813 -25.13120 -24.01668 -21.74964 -21.55950 -20.89934 -20.14656 -18.05726 -17.59957 -17.22153 -16.89759 -15.79438 -15.63240 -15.13404 -14.84249 -14.63801 -14.17354 -13.90836 -13.79566 -13.56670 -13.46322 -13.26743 -13.09023 -12.70402 -12.49225 -12.37197 -12.10858 -11.78111 -11.60623 -11.54767 -11.41196 -11.25491 -10.89308 -10.78061 -10.75019 -10.64971 -10.10509 -9.88939 -9.32529 -8.82346 -8.81064 -8.07665 -7.28766 -6.35142 -4.01565 1.74704 2.16741 2.36749 2.59844 3.26486 3.29720 3.45801 4.01676 4.29651 4.47022 4.53817 4.63311 4.75127 4.82044 4.90634 5.09972 5.14544 5.15225 5.23968 5.31681 5.45602 5.49150 5.51691 5.62138 5.70113 5.80270 5.83785 5.91662 5.92601 6.03490 6.19034 6.32702 6.55817 6.64534 6.86642 7.17652 7.28647 7.29023 7.38838 7.67687 7.87679 8.10979 8.11407 9.00650 9.64327 10.72844 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.003196 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.638679 B = 8759.365359 C = 8888.707284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.141 4.141 4 C 0.105 3.895 5 N -0.484 5.484 6 O -0.331 6.331 7 C 0.542 3.458 8 O -0.502 6.502 9 C -0.083 4.083 10 C -0.038 4.038 11 C -0.187 4.187 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.160 3.840 15 O -0.220 6.220 16 C -0.387 4.387 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.174 4.174 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.387 0.613 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.278 0.722 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -11.064 -22.166 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.179 4.179 4 C -0.016 4.016 5 N -0.263 5.263 6 O -0.224 6.224 7 C 0.332 3.668 8 O -0.375 6.375 9 C -0.123 4.123 10 C -0.038 4.038 11 C -0.206 4.206 12 C -0.094 4.094 13 C -0.237 4.237 14 C 0.109 3.891 15 O -0.125 6.125 16 C -0.463 4.463 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.194 4.194 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.233 0.767 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.558 -10.855 -20.972 24.795 hybrid contribution 0.632 -0.670 -0.618 1.109 sum -6.926 -11.525 -21.590 25.435 Atomic orbital electron populations 1.21755 0.95510 1.01648 1.02056 1.21439 0.96326 0.95992 1.02096 1.22049 0.94659 0.97735 1.03484 1.21967 0.94927 0.81005 1.03739 1.49803 1.62678 1.12026 1.01836 1.89076 1.83742 1.35368 1.14205 1.20520 0.78073 0.88154 0.80039 1.90828 1.45300 1.72234 1.29180 1.20462 1.03581 0.91548 0.96659 1.18755 0.94240 0.97774 0.93080 1.20429 0.97388 1.05385 0.97438 1.20735 0.97693 0.97967 0.93049 1.21293 0.94620 1.06479 1.01262 1.19006 0.88193 0.93275 0.88654 1.83568 1.39877 1.64614 1.24467 1.20767 1.03968 1.31334 0.90251 0.87663 1.24449 0.98885 0.96440 0.94250 1.69649 1.34654 1.41007 1.06777 0.86190 0.82076 0.80803 0.77898 1.19924 1.20846 1.18369 1.19952 1.00351 1.07239 0.91812 0.92832 0.92665 0.92422 0.92094 0.91564 0.90322 0.91749 0.89850 0.89288 0.76678 0.88098 0.88059 0.87734 0.87174 0.84996 0.91150 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.14 -1.21 5.35 -26.73 -0.14 -1.36 16 4 C 0.10 0.89 5.57 -4.04 -0.02 0.87 16 5 N -0.48 -5.28 3.78 -60.30 -0.23 -5.51 16 6 O -0.33 -2.68 14.28 -11.47 -0.16 -2.84 16 7 C 0.54 8.06 7.57 -10.98 -0.08 7.98 16 8 O -0.50 -9.33 15.11 5.56 0.08 -9.25 16 9 C -0.08 -1.19 5.14 -29.04 -0.15 -1.34 16 10 C -0.04 -0.69 4.37 -104.65 -0.46 -1.15 16 11 C -0.19 -3.39 9.70 -39.53 -0.38 -3.78 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.87 16 13 C -0.22 -4.96 9.17 -39.39 -0.36 -5.32 16 14 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 15 O -0.22 -6.06 8.59 0.05 0.00 -6.06 16 16 C -0.39 -11.29 9.95 30.89 0.31 -10.98 16 17 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 18 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 19 N -0.88 -26.10 13.96 55.48 0.77 -25.33 16 20 Si 0.90 22.30 28.62 -169.99 -4.86 17.44 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.26 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.17 -3.72 9.64 -39.40 -0.38 -4.10 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.93 7.34 -51.93 -0.38 0.54 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.41 7.84 -51.93 -0.41 0.00 16 33 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 34 H 0.39 1.06 8.72 45.56 0.40 1.45 16 35 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 36 H 0.10 1.32 8.08 -51.93 -0.42 0.90 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 39 H 0.13 3.12 5.64 -52.49 -0.30 2.83 16 40 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -34.19 350.52 -6.49 -40.68 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.16 Total: 2.96 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.22 Total: -17.38 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.55 Total: -30.84 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.08 Total: -18.15 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.86 Total: 17.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.19 -6.49 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904212316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.772 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds