Wall clock time and date at job start Tue Mar 31 2020 07:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47122 * 2 1 4 4 C 1.53001 * 109.47122 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47591 * 180.02562 * 4 3 2 6 6 O 1.41599 * 120.00064 * 255.00392 * 5 4 3 7 7 C 1.34783 * 119.99931 * 74.99763 * 5 4 3 8 8 O 1.21281 * 119.99796 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99878 * 180.02562 * 7 5 4 10 10 C 1.50699 * 109.46970 * 180.02562 * 9 7 5 11 11 C 1.38328 * 119.96224 * 270.02075 * 10 9 7 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99515 * 10 9 7 25 25 H 1.09001 * 109.47056 * 59.99875 * 1 2 3 26 26 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46811 * 300.00311 * 1 2 3 28 28 H 1.09005 * 109.47047 * 240.00185 * 2 1 3 29 29 H 1.09001 * 109.47056 * 120.00124 * 2 1 3 30 30 H 1.08995 * 109.46977 * 60.00319 * 3 2 1 31 31 H 1.08993 * 109.47505 * 299.99849 * 3 2 1 32 32 H 1.09001 * 109.47267 * 59.99459 * 4 3 2 33 33 H 1.09001 * 109.47056 * 300.00124 * 4 3 2 34 34 H 0.96694 * 113.99726 * 359.97438 * 6 5 4 35 35 H 1.08996 * 109.47386 * 59.99804 * 9 7 5 36 36 H 1.08997 * 109.47038 * 299.99640 * 9 7 5 37 37 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 38 38 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 40 40 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0585 2.8236 0.0013 6 8 4.5942 3.3857 -1.1829 7 6 3.9978 3.5594 1.1289 8 8 3.5393 3.0778 2.1432 9 6 4.4997 4.9803 1.1294 10 6 4.3205 5.5759 2.5021 11 6 3.1467 6.2342 2.8217 12 6 2.9787 6.7824 4.0800 13 6 3.9805 6.6684 5.0240 14 6 5.1623 6.0131 4.7044 15 8 6.1512 5.9047 5.6281 16 6 5.9737 6.5574 6.7944 17 1 5.0417 7.0659 6.9922 18 6 6.9878 6.5759 7.7398 19 7 6.8147 7.2133 8.8776 20 14 8.6001 5.6970 7.3973 21 1 9.5421 6.6322 6.7317 22 1 9.1897 5.2280 8.6771 23 1 8.3503 4.5319 6.5111 24 6 5.3280 5.4634 3.4396 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9564 -0.8899 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 4.5962 2.7825 -1.9385 35 1 3.9358 5.5651 0.4028 36 1 5.5567 4.9924 0.8637 37 1 2.3601 6.3208 2.0867 38 1 2.0612 7.2962 4.3265 39 1 3.8466 7.0922 6.0083 40 1 7.5240 7.2259 9.5391 41 1 6.2444 4.9497 3.1893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904212316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:28 Heat of formation + Delta-G solvation = -68.771408 kcal Electronic energy + Delta-G solvation = -22878.007553 eV Core-core repulsion = 19338.724867 eV Total energy + Delta-G solvation = -3539.282686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25227 -40.57317 -38.51298 -37.76399 -36.25539 -34.48459 -33.55495 -33.06341 -31.14095 -30.08980 -28.12320 -27.16284 -24.86050 -23.34537 -22.53803 -22.08389 -21.28955 -19.69427 -19.12312 -18.47791 -18.11417 -16.94884 -16.85780 -16.33797 -16.30773 -15.84447 -15.72225 -15.56771 -15.02371 -14.80418 -14.62459 -14.36832 -14.16418 -14.00567 -13.90472 -13.74171 -13.35266 -13.05308 -12.88501 -12.54403 -12.46529 -12.35889 -12.30967 -12.19792 -12.01640 -11.93647 -11.50806 -11.32124 -11.05011 -10.90297 -9.68937 -9.66778 -9.07797 -8.50561 -6.23288 0.45161 0.68504 1.08101 1.29359 1.34242 1.50925 1.51404 2.27797 2.72586 3.02181 3.05750 3.39798 3.78845 3.85938 3.95718 4.06283 4.12614 4.28410 4.30651 4.40598 4.47447 4.51763 4.56702 4.65121 4.66719 4.70496 4.85256 4.93841 4.95612 5.05425 5.22638 5.24316 5.33019 5.38518 5.43300 5.64071 5.71262 5.75333 5.78966 5.91366 6.24117 6.60373 6.83754 7.17922 7.58531 8.61342 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.003196 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.638679 B = 8759.365359 C = 8888.707284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.134 4.134 4 C 0.101 3.899 5 N -0.476 5.476 6 O -0.327 6.327 7 C 0.536 3.464 8 O -0.554 6.554 9 C -0.079 4.079 10 C -0.030 4.030 11 C -0.171 4.171 12 C -0.076 4.076 13 C -0.239 4.239 14 C 0.121 3.879 15 O -0.247 6.247 16 C -0.400 4.400 17 H 0.081 0.919 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.971 3.029 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.181 4.181 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.413 0.587 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.109 0.891 40 H 0.285 0.715 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.868 -12.305 -26.491 30.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.172 4.172 4 C -0.019 4.019 5 N -0.252 5.252 6 O -0.225 6.225 7 C 0.326 3.674 8 O -0.432 6.432 9 C -0.118 4.118 10 C -0.031 4.031 11 C -0.189 4.189 12 C -0.094 4.094 13 C -0.258 4.258 14 C 0.072 3.928 15 O -0.154 6.154 16 C -0.477 4.477 17 H 0.098 0.902 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.192 1.192 24 C -0.200 4.200 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.264 0.736 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.740 -12.118 -25.386 29.175 hybrid contribution 0.452 -0.310 0.382 0.668 sum -7.288 -12.427 -25.004 28.857 Atomic orbital electron populations 1.21772 0.95606 1.02134 1.01623 1.21432 0.96240 0.95071 1.02809 1.21961 0.94699 0.98431 1.02145 1.22170 0.94826 0.79829 1.05044 1.49476 1.61114 1.12310 1.02278 1.89059 1.83260 1.36237 1.13926 1.20445 0.77969 0.88431 0.80516 1.90819 1.47752 1.73291 1.31332 1.20514 1.05254 0.91680 0.94399 1.19241 0.93128 0.96260 0.94474 1.20988 0.97932 1.02651 0.97369 1.21111 0.97771 0.97621 0.92857 1.21329 0.95657 1.07407 1.01411 1.19556 0.88458 0.95236 0.89552 1.83507 1.41397 1.66051 1.24490 1.20727 1.03537 1.31820 0.91569 0.90199 1.25276 1.02293 0.97300 0.93951 1.69729 1.36123 1.42832 1.07786 0.85220 0.77896 0.79357 0.78235 1.18691 1.18979 1.19180 1.20241 1.01757 1.06891 0.91155 0.92018 0.91755 0.94113 0.89571 0.92603 0.94118 0.90499 0.85243 0.91298 0.73634 0.84991 0.86490 0.83639 0.83978 0.87291 0.90539 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.41 5.93 30.60 0.18 -1.22 16 3 C -0.13 -2.03 5.35 30.60 0.16 -1.86 16 4 C 0.10 1.44 5.57 86.38 0.48 1.92 16 5 N -0.48 -8.78 3.78 -463.06 -1.75 -10.53 16 6 O -0.33 -3.69 14.28 -38.78 -0.55 -4.24 16 7 C 0.54 14.70 7.57 87.66 0.66 15.37 16 8 O -0.55 -20.31 15.11 -3.03 -0.05 -20.36 16 9 C -0.08 -1.99 5.14 29.10 0.15 -1.84 16 10 C -0.03 -1.06 4.37 -19.88 -0.09 -1.14 16 11 C -0.17 -5.72 9.70 22.30 0.22 -5.50 16 12 C -0.08 -2.86 10.04 22.25 0.22 -2.63 16 13 C -0.24 -11.37 9.17 22.39 0.21 -11.16 16 14 C 0.12 6.14 6.65 22.58 0.15 6.29 16 15 O -0.25 -14.29 8.59 -22.74 -0.20 -14.48 16 16 C -0.40 -24.75 9.95 67.92 0.68 -24.08 16 17 H 0.08 5.17 5.44 -2.91 -0.02 5.15 16 18 C 0.01 0.60 5.49 84.83 0.47 1.06 16 19 N -0.92 -56.88 13.96 21.61 0.30 -56.58 16 20 Si 0.97 47.26 28.62 68.60 1.96 49.22 16 21 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 24 C -0.18 -7.74 9.64 22.39 0.22 -7.53 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.94 7.34 -2.39 -0.02 0.92 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 0.63 7.84 -2.39 -0.02 0.61 16 33 H 0.07 1.30 7.90 -2.39 -0.02 1.28 16 34 H 0.41 -0.08 8.72 -74.06 -0.65 -0.72 16 35 H 0.13 2.52 8.09 -2.39 -0.02 2.51 16 36 H 0.12 2.62 8.08 -2.39 -0.02 2.60 16 37 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.11 5.61 5.64 -2.91 -0.02 5.59 16 40 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 41 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -79.90 350.52 4.53 -75.37 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.39 Total: 15.14 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 4.42 Total: -33.53 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -1.45 Total: -67.12 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.79 Total: -39.08 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.96 Total: 49.22 kcal Total: -79.90 4.53 -75.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904212316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.598 kcal (2) G-P(sol) polarization free energy of solvation -79.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds