Wall clock time and date at job start Tue Mar 31 2020 07:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47191 * 2 1 4 4 C 1.52999 * 109.46699 * 119.99849 * 2 1 3 5 5 N 1.46501 * 109.47107 * 175.00083 * 4 2 1 6 6 C 1.35415 * 119.46632 * 89.99604 * 5 4 2 7 7 C 1.35788 * 121.24686 * 179.69954 * 6 5 4 8 8 C 1.39432 * 120.13505 * 0.30554 * 7 6 5 9 9 C 1.39421 * 118.95298 * 359.97037 * 8 7 6 10 10 C 1.46924 * 120.59438 * 179.97438 * 9 8 7 11 11 O 1.21574 * 119.99906 * 0.02562 * 10 9 8 12 12 O 1.34827 * 120.00004 * 180.02562 * 10 9 8 13 13 C 1.45192 * 116.99655 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46897 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.47251 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99505 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00094 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99790 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00259 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47096 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47693 * 119.99438 * 19 17 15 22 22 H 1.48502 * 109.47014 * 240.00129 * 19 17 15 23 23 C 1.34651 * 119.46690 * 270.25643 * 5 4 2 24 24 O 1.21877 * 120.10975 * 0.02562 * 23 5 4 25 25 H 1.08993 * 109.47347 * 300.00257 * 1 2 3 26 26 H 1.09005 * 109.46729 * 60.00376 * 1 2 3 27 27 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46933 * 239.99344 * 2 1 3 29 29 H 1.09001 * 109.47352 * 59.99426 * 3 2 1 30 30 H 1.09002 * 109.47122 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46977 * 299.99472 * 3 2 1 32 32 H 1.08995 * 109.47597 * 54.99810 * 4 2 1 33 33 H 1.09004 * 109.47296 * 295.00095 * 4 2 1 34 34 H 1.08002 * 119.38078 * 359.97438 * 6 5 4 35 35 H 1.07992 * 119.93417 * 180.27705 * 7 6 5 36 36 H 1.08009 * 120.52472 * 180.02562 * 8 7 6 37 37 H 1.08995 * 109.47852 * 300.00214 * 13 12 10 38 38 H 1.09000 * 109.47174 * 60.00559 * 13 12 10 39 39 H 1.09005 * 109.47361 * 300.00016 * 14 13 12 40 40 H 1.09000 * 109.46965 * 60.00170 * 14 13 12 41 41 H 0.96999 * 119.99777 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.2608 0.1601 1.7216 7 6 5.6168 0.0968 1.6926 8 6 6.2543 -0.9944 1.1035 9 6 5.4778 -2.0114 0.5497 10 6 6.1118 -3.1774 -0.0806 11 8 7.3239 -3.2618 -0.1222 12 8 5.3493 -4.1537 -0.6128 13 6 6.0436 -5.2753 -1.2195 14 6 5.0205 -6.2735 -1.7652 15 6 5.7410 -7.4381 -2.3944 16 1 6.8207 -7.4634 -2.4044 17 6 5.0219 -8.4706 -2.9581 18 7 3.7072 -8.4394 -2.9463 19 14 5.9150 -9.9137 -3.7386 20 1 7.3814 -9.7096 -3.6227 21 1 5.5328 -11.1680 -3.0416 22 1 5.5409 -10.0103 -5.1725 23 6 4.0638 -1.8999 0.6052 24 8 3.3624 -2.7751 0.1283 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 3.7799 1.0113 2.1806 35 1 6.2029 0.8935 2.1264 36 1 7.3325 -1.0514 1.0773 37 1 6.6710 -4.9162 -2.0352 38 1 6.6661 -5.7652 -0.4709 39 1 4.3927 -6.6329 -0.9497 40 1 4.3983 -5.7833 -2.5140 41 1 3.2013 -9.1660 -3.3425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909713604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:41 Heat of formation + Delta-G solvation = -103.062789 kcal Electronic energy + Delta-G solvation = -23296.212779 eV Core-core repulsion = 19755.443108 eV Total energy + Delta-G solvation = -3540.769672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.66931 -39.45313 -37.14877 -36.70760 -35.72236 -33.55950 -33.17490 -30.55073 -29.86955 -27.68072 -27.25742 -25.68424 -24.33065 -22.96517 -21.34518 -20.65993 -20.44885 -18.25996 -17.55501 -16.82264 -16.40200 -16.19772 -15.89693 -15.54798 -15.49356 -15.06950 -14.60465 -14.39914 -14.10443 -13.39525 -13.04470 -13.00348 -12.75940 -12.58680 -12.42291 -12.29337 -12.23450 -12.09089 -11.67999 -11.35526 -11.11025 -11.08473 -10.88321 -10.61220 -10.60403 -10.22554 -10.18898 -9.85392 -9.47673 -9.42575 -9.13653 -8.32619 -8.15941 -5.98139 -4.02016 0.22903 1.71855 2.32085 2.74761 3.34790 3.38387 3.42923 3.49630 3.72145 4.14298 4.23507 4.39307 4.48881 4.56812 4.62235 4.76007 4.88087 4.97297 5.17355 5.21084 5.24207 5.35555 5.37721 5.40521 5.49552 5.61619 5.71123 5.75748 5.87594 5.94262 5.98905 6.23163 6.27982 6.29452 6.79500 6.83288 7.18375 7.73335 7.82157 7.98120 8.01942 8.35195 8.47217 9.04294 9.61235 11.13446 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.003474 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.065826 B = 8058.507416 C = 9296.510312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.153 4.153 4 C 0.091 3.909 5 N -0.494 5.494 6 C 0.170 3.830 7 C -0.253 4.253 8 C 0.060 3.940 9 C -0.254 4.254 10 C 0.518 3.482 11 O -0.528 6.528 12 O -0.325 6.325 13 C 0.074 3.926 14 C 0.026 3.974 15 C -0.523 4.523 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.522 3.478 24 O -0.492 6.492 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 25.393 12.286 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.210 4.210 4 C -0.030 4.030 5 N -0.204 5.204 6 C 0.039 3.961 7 C -0.276 4.276 8 C 0.038 3.962 9 C -0.259 4.259 10 C 0.364 3.636 11 O -0.421 6.421 12 O -0.240 6.240 13 C 0.001 3.999 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.321 3.679 24 O -0.368 6.368 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.182 0.818 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.231 24.568 11.849 27.602 hybrid contribution 0.636 -0.710 -0.416 1.040 sum -3.595 23.857 11.434 26.699 Atomic orbital electron populations 1.21747 0.93544 1.02705 1.02133 1.21482 0.96960 0.96428 0.98511 1.21965 1.01071 0.95621 1.02382 1.22215 0.77112 1.04342 0.99319 1.45735 1.09066 1.18589 1.46998 1.22210 0.92613 0.90815 0.90435 1.20567 0.92942 1.02507 1.11619 1.22011 1.01368 0.88611 0.84235 1.20287 0.92697 0.99006 1.13941 1.20236 0.84995 0.82551 0.75818 1.90800 1.14934 1.79069 1.57337 1.86835 1.40263 1.30280 1.66620 1.23616 0.96969 0.83711 0.95644 1.19134 0.93850 0.91395 0.96724 1.21055 0.93180 1.04206 1.37680 0.92269 1.24993 0.94865 0.98370 0.96048 1.70010 1.05268 1.32633 1.44904 0.86434 0.79905 0.82137 0.78926 1.19616 1.20904 1.20909 1.17030 0.88965 0.81677 0.80271 1.91088 1.63177 1.37464 1.45092 0.92477 0.91957 0.91835 0.89801 0.92385 0.92655 0.91946 0.87533 0.88944 0.81842 0.82921 0.83354 0.92556 0.92542 0.95348 0.95353 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.19 37.16 0.34 -0.61 16 2 C -0.11 -0.91 3.12 -90.62 -0.28 -1.19 16 3 C -0.15 -0.87 8.63 37.15 0.32 -0.55 16 4 C 0.09 0.74 4.83 -4.04 -0.02 0.72 16 5 N -0.49 -5.02 2.46 -119.32 -0.29 -5.32 16 6 C 0.17 1.08 8.20 -16.85 -0.14 0.94 16 7 C -0.25 -1.74 9.99 -40.01 -0.40 -2.14 16 8 C 0.06 0.67 9.70 -38.70 -0.38 0.29 16 9 C -0.25 -4.09 5.92 -104.52 -0.62 -4.71 16 10 C 0.52 10.84 7.88 34.25 0.27 11.11 16 11 O -0.53 -11.53 16.18 -19.32 -0.31 -11.84 16 12 O -0.33 -7.88 8.42 -48.04 -0.40 -8.28 16 13 C 0.07 1.85 5.42 37.16 0.20 2.05 16 14 C 0.03 0.76 5.35 -27.88 -0.15 0.61 16 15 C -0.52 -15.69 9.11 -34.44 -0.31 -16.01 16 16 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 19 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.52 8.28 7.44 -14.90 -0.11 8.17 16 24 O -0.49 -10.11 14.76 -16.44 -0.24 -10.35 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.33 6.33 -51.93 -0.33 0.00 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 1.09 7.39 -51.93 -0.38 0.71 16 33 H 0.09 0.41 8.00 -51.93 -0.42 -0.01 16 34 H 0.16 0.31 7.87 -52.49 -0.41 -0.10 16 35 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.15 1.52 7.69 -52.48 -0.40 1.11 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -38.05 349.01 -7.79 -45.84 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -6.14 Total: -5.91 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.37 Total: 0.33 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.44 Total: -32.40 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.96 Total: -30.48 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.05 -7.79 -45.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909713604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.227 kcal (2) G-P(sol) polarization free energy of solvation -38.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds