Wall clock time and date at job start Tue Mar 31 2020 07:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47191 * 2 1 4 4 C 1.52999 * 109.46699 * 119.99849 * 2 1 3 5 5 N 1.46501 * 109.47107 * 175.00083 * 4 2 1 6 6 C 1.35415 * 119.46632 * 89.99604 * 5 4 2 7 7 C 1.35788 * 121.24686 * 179.69954 * 6 5 4 8 8 C 1.39432 * 120.13505 * 0.30554 * 7 6 5 9 9 C 1.39421 * 118.95298 * 359.97037 * 8 7 6 10 10 C 1.46924 * 120.59438 * 179.97438 * 9 8 7 11 11 O 1.21574 * 119.99906 * 0.02562 * 10 9 8 12 12 O 1.34827 * 120.00004 * 180.02562 * 10 9 8 13 13 C 1.45192 * 116.99655 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46897 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.47251 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99505 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00094 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99790 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00259 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47096 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47693 * 119.99438 * 19 17 15 22 22 H 1.48502 * 109.47014 * 240.00129 * 19 17 15 23 23 C 1.34651 * 119.46690 * 270.25643 * 5 4 2 24 24 O 1.21877 * 120.10975 * 0.02562 * 23 5 4 25 25 H 1.08993 * 109.47347 * 300.00257 * 1 2 3 26 26 H 1.09005 * 109.46729 * 60.00376 * 1 2 3 27 27 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46933 * 239.99344 * 2 1 3 29 29 H 1.09001 * 109.47352 * 59.99426 * 3 2 1 30 30 H 1.09002 * 109.47122 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46977 * 299.99472 * 3 2 1 32 32 H 1.08995 * 109.47597 * 54.99810 * 4 2 1 33 33 H 1.09004 * 109.47296 * 295.00095 * 4 2 1 34 34 H 1.08002 * 119.38078 * 359.97438 * 6 5 4 35 35 H 1.07992 * 119.93417 * 180.27705 * 7 6 5 36 36 H 1.08009 * 120.52472 * 180.02562 * 8 7 6 37 37 H 1.08995 * 109.47852 * 300.00214 * 13 12 10 38 38 H 1.09000 * 109.47174 * 60.00559 * 13 12 10 39 39 H 1.09005 * 109.47361 * 300.00016 * 14 13 12 40 40 H 1.09000 * 109.46965 * 60.00170 * 14 13 12 41 41 H 0.96999 * 119.99777 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.2608 0.1601 1.7216 7 6 5.6168 0.0968 1.6926 8 6 6.2543 -0.9944 1.1035 9 6 5.4778 -2.0114 0.5497 10 6 6.1118 -3.1774 -0.0806 11 8 7.3239 -3.2618 -0.1222 12 8 5.3493 -4.1537 -0.6128 13 6 6.0436 -5.2753 -1.2195 14 6 5.0205 -6.2735 -1.7652 15 6 5.7410 -7.4381 -2.3944 16 1 6.8207 -7.4634 -2.4044 17 6 5.0219 -8.4706 -2.9581 18 7 3.7072 -8.4394 -2.9463 19 14 5.9150 -9.9137 -3.7386 20 1 7.3814 -9.7096 -3.6227 21 1 5.5328 -11.1680 -3.0416 22 1 5.5409 -10.0103 -5.1725 23 6 4.0638 -1.8999 0.6052 24 8 3.3624 -2.7751 0.1283 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 3.7799 1.0113 2.1806 35 1 6.2029 0.8935 2.1264 36 1 7.3325 -1.0514 1.0773 37 1 6.6710 -4.9162 -2.0352 38 1 6.6661 -5.7652 -0.4709 39 1 4.3927 -6.6329 -0.9497 40 1 4.3983 -5.7833 -2.5140 41 1 3.2013 -9.1660 -3.3425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909713604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:40 Heat of formation + Delta-G solvation = -127.965070 kcal Electronic energy + Delta-G solvation = -23297.292623 eV Core-core repulsion = 19755.443108 eV Total energy + Delta-G solvation = -3541.849516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.64495 -41.07122 -38.27152 -37.81454 -37.11493 -35.46867 -34.39982 -32.41884 -31.20196 -28.23831 -27.93716 -27.41040 -25.89274 -23.87803 -23.14408 -22.25692 -21.27849 -19.61693 -18.56475 -18.48639 -17.68084 -17.57603 -17.45696 -16.91251 -16.76472 -16.48791 -15.77109 -15.43910 -15.16709 -14.75793 -14.53727 -14.41830 -13.89708 -13.54435 -13.50973 -13.19892 -13.16465 -13.06629 -13.01074 -12.76244 -12.63077 -12.60255 -12.29453 -11.98207 -11.93150 -11.70668 -11.58646 -11.48467 -11.42560 -11.07057 -11.02173 -10.66446 -9.12580 -8.29656 -6.45282 -0.68570 0.83579 1.36749 1.37118 1.40184 1.46092 1.54186 1.90107 2.38640 2.61609 3.03230 3.45436 3.66713 3.76493 3.85393 3.86566 3.92765 4.12571 4.15359 4.16175 4.21115 4.33756 4.59896 4.62857 4.67795 4.77358 4.81831 4.89265 4.97122 4.99399 5.13975 5.23029 5.25981 5.36189 5.37938 5.38326 5.51674 5.53450 5.70244 5.93372 6.01270 6.67565 6.77542 6.92368 7.24667 8.84068 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.003474 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.065826 B = 8058.507416 C = 9296.510312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.087 3.913 5 N -0.487 5.487 6 C 0.201 3.799 7 C -0.245 4.245 8 C 0.094 3.906 9 C -0.325 4.325 10 C 0.510 3.490 11 O -0.552 6.552 12 O -0.351 6.351 13 C 0.088 3.912 14 C 0.036 3.964 15 C -0.551 4.551 16 H 0.068 0.932 17 C 0.001 3.999 18 N -0.930 5.930 19 Si 0.984 3.016 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.272 1.272 23 C 0.515 3.485 24 O -0.566 6.566 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.033 0.967 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.234 0.766 35 H 0.208 0.792 36 H 0.157 0.843 37 H 0.058 0.942 38 H 0.059 0.941 39 H -0.003 1.003 40 H -0.004 1.004 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 29.126 14.549 32.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.205 4.205 4 C -0.033 4.033 5 N -0.193 5.193 6 C 0.070 3.930 7 C -0.266 4.266 8 C 0.071 3.929 9 C -0.331 4.331 10 C 0.359 3.641 11 O -0.447 6.447 12 O -0.266 6.266 13 C 0.015 3.985 14 C -0.001 4.001 15 C -0.588 4.588 16 H 0.086 0.914 17 C -0.198 4.198 18 N -0.569 5.569 19 Si 0.807 3.193 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.198 1.198 23 C 0.316 3.684 24 O -0.449 6.449 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.250 0.750 35 H 0.225 0.775 36 H 0.174 0.826 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.515 28.367 14.144 31.892 hybrid contribution 0.322 -1.565 -0.968 1.869 sum -3.193 26.801 13.176 30.035 Atomic orbital electron populations 1.21736 0.92647 1.01833 1.03653 1.21441 0.97751 0.97830 0.96327 1.21954 1.00990 0.93428 1.04107 1.22482 0.75506 1.03605 1.01694 1.45752 1.10480 1.17774 1.45266 1.23449 0.92759 0.90188 0.86555 1.21215 0.93526 1.01804 1.10099 1.22391 1.01716 0.87711 0.81120 1.20035 0.93440 0.99803 1.19773 1.21125 0.85004 0.82814 0.75157 1.90742 1.15467 1.79718 1.58804 1.86844 1.41262 1.30921 1.67594 1.23143 0.95530 0.84046 0.95805 1.18920 0.93981 0.92392 0.94843 1.21404 0.93768 1.04982 1.38670 0.91365 1.26133 0.95741 1.01749 0.96131 1.70159 1.07297 1.34018 1.45440 0.85126 0.78824 0.77433 0.77955 1.18327 1.19729 1.19761 1.17108 0.88797 0.82390 0.80080 1.91039 1.64503 1.40550 1.48775 0.89370 0.91933 0.94000 0.94858 0.88616 0.92628 0.92379 0.90913 0.83161 0.75021 0.77465 0.82560 0.92344 0.92270 0.98468 0.98538 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 71.98 0.66 -1.08 16 2 C -0.11 -1.70 3.12 -10.79 -0.03 -1.73 16 3 C -0.15 -1.08 8.63 71.98 0.62 -0.46 16 4 C 0.09 1.25 4.83 86.38 0.42 1.67 16 5 N -0.49 -8.94 2.46 -649.64 -1.60 -10.54 16 6 C 0.20 1.33 8.20 83.57 0.69 2.02 16 7 C -0.25 -1.94 9.99 21.99 0.22 -1.72 16 8 C 0.09 1.89 9.70 22.84 0.22 2.11 16 9 C -0.33 -10.97 5.92 -19.80 -0.12 -11.09 16 10 C 0.51 23.11 7.88 70.10 0.55 23.66 16 11 O -0.55 -25.58 16.18 19.60 0.32 -25.27 16 12 O -0.35 -18.78 8.42 -50.51 -0.43 -19.21 16 13 C 0.09 4.84 5.42 71.98 0.39 5.23 16 14 C 0.04 2.26 5.35 29.85 0.16 2.42 16 15 C -0.55 -34.61 9.11 25.60 0.23 -34.37 16 16 H 0.07 4.07 7.74 -2.91 -0.02 4.04 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -60.55 13.29 21.45 0.28 -60.27 16 19 Si 0.98 46.74 29.54 68.60 2.03 48.76 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.51 17.29 7.44 85.18 0.63 17.92 16 24 O -0.57 -26.08 14.76 15.61 0.23 -25.85 16 25 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.05 0.40 6.33 -2.39 -0.02 0.39 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 1.60 7.39 -2.39 -0.02 1.58 16 33 H 0.15 0.44 8.00 -2.38 -0.02 0.42 16 34 H 0.23 -1.46 7.87 -2.91 -0.02 -1.48 16 35 H 0.21 -0.41 8.06 -2.91 -0.02 -0.43 16 36 H 0.16 2.88 7.69 -2.91 -0.02 2.86 16 37 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -96.98 349.01 6.95 -90.03 By element: Atomic # 1 Polarization: -3.77 SS G_CDS: 1.01 Total: -2.76 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 5.11 Total: 5.09 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.32 Total: -70.81 kcal Atomic # 8 Polarization: -70.44 SS G_CDS: 0.12 Total: -70.32 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -96.98 6.95 -90.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909713604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.935 kcal (2) G-P(sol) polarization free energy of solvation -96.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds