Wall clock time and date at job start Tue Mar 31 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47012 * 2 1 4 4 N 1.31908 * 119.39645 * 270.27200 * 3 2 1 5 5 C 1.32213 * 121.80154 * 180.28966 * 4 3 2 6 6 O 1.35413 * 119.80362 * 179.70624 * 5 4 3 7 7 C 1.40367 * 120.39021 * 359.43395 * 5 4 3 8 8 C 1.47387 * 120.60426 * 180.25092 * 7 5 4 9 9 O 1.21512 * 120.00054 * 0.02562 * 8 7 5 10 10 O 1.34757 * 120.00039 * 180.02562 * 8 7 5 11 11 C 1.45197 * 116.99647 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46829 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47106 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47283 * 179.97438 * 13 12 11 15 15 H 1.08010 * 119.99708 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00381 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00063 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00286 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47249 * 89.99653 * 18 16 14 20 20 H 1.48496 * 109.47216 * 209.99571 * 18 16 14 21 21 H 1.48504 * 109.46642 * 329.99515 * 18 16 14 22 22 C 1.40011 * 118.79494 * 0.27470 * 7 5 4 23 23 C 1.38321 * 119.40116 * 89.99628 * 3 2 1 24 24 C 1.50708 * 120.26638 * 359.97438 * 23 3 2 25 25 H 1.09002 * 109.47157 * 60.00347 * 1 2 3 26 26 H 1.09002 * 109.46852 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47353 * 300.00359 * 1 2 3 28 28 H 1.08997 * 109.47153 * 240.00126 * 2 1 3 29 29 H 1.08992 * 109.47201 * 119.99615 * 2 1 3 30 30 H 0.96700 * 114.00289 * 269.73082 * 6 5 4 31 31 H 1.08999 * 109.47540 * 299.99636 * 11 10 8 32 32 H 1.09004 * 109.47400 * 59.99897 * 11 10 8 33 33 H 1.08999 * 109.46836 * 300.00157 * 12 11 10 34 34 H 1.08996 * 109.46994 * 60.00059 * 12 11 10 35 35 H 1.08999 * 109.47082 * 300.00164 * 13 12 11 36 36 H 1.09004 * 109.47118 * 59.99990 * 13 12 11 37 37 H 0.97004 * 120.00548 * 180.02562 * 17 16 14 38 38 H 1.07994 * 120.83342 * 179.97438 * 22 7 5 39 39 H 1.08993 * 109.47257 * 270.01706 * 24 23 3 40 40 H 1.08993 * 109.46886 * 30.02404 * 24 23 3 41 41 H 1.09004 * 109.46441 * 150.02052 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2430 2.0332 -1.1492 5 6 2.6884 3.2768 -1.2047 6 8 2.8962 3.8642 -2.4070 7 6 2.9417 3.9936 -0.0248 8 6 3.4331 5.3820 -0.0812 9 8 3.6220 5.9165 -1.1560 10 8 3.6728 6.0588 1.0592 11 6 4.1546 7.4222 0.9277 12 6 4.3674 8.0242 2.3181 13 6 4.8757 9.4606 2.1796 14 6 5.0847 10.0538 3.5490 15 1 4.8761 9.4649 4.4302 16 6 5.5420 11.3481 3.6773 17 7 5.7964 12.0650 2.6045 18 14 5.8017 12.0832 5.3749 19 1 7.1905 11.8115 5.8248 20 1 5.5776 13.5501 5.3187 21 1 4.8432 11.4723 6.3306 22 6 2.7197 3.3656 1.2067 23 6 2.2586 2.0611 1.2051 24 6 2.0043 1.3438 2.5058 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8899 30 1 3.7894 3.7404 -2.7562 31 1 5.0986 7.4230 0.3827 32 1 3.4204 8.0162 0.3834 33 1 3.4232 8.0234 2.8627 34 1 5.1014 7.4303 2.8627 35 1 5.8200 9.4609 1.6352 36 1 4.1420 10.0547 1.6348 37 1 6.1185 12.9755 2.6946 38 1 2.9041 3.8862 2.1347 39 1 0.9742 1.5135 2.8190 40 1 2.1716 0.2753 2.3702 41 1 2.6834 1.7239 3.2691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924132308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:45 Heat of formation + Delta-G solvation = -116.294576 kcal Electronic energy + Delta-G solvation = -22571.069355 eV Core-core repulsion = 19029.725910 eV Total energy + Delta-G solvation = -3541.343445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26300 -39.79132 -37.82501 -36.28199 -34.46552 -33.97688 -33.66695 -31.77999 -30.93369 -27.20565 -27.16026 -25.52611 -23.78227 -22.71873 -22.34643 -20.74655 -20.33277 -18.90653 -17.71144 -17.24311 -16.60755 -16.39479 -15.96984 -15.76840 -15.27162 -14.53742 -14.47254 -14.12796 -14.01217 -13.81055 -13.55726 -13.13410 -12.95025 -12.64073 -12.41099 -12.20506 -12.10385 -11.91906 -11.87257 -11.71769 -11.31593 -10.98884 -10.70430 -10.66875 -10.51979 -10.40815 -10.13839 -9.81620 -9.74822 -9.50206 -9.18281 -9.01554 -8.40465 -6.05080 -4.08332 0.19151 0.76800 2.46190 2.71015 3.15231 3.29645 3.35945 3.39127 3.42046 4.09096 4.26268 4.37127 4.41654 4.47924 4.80440 4.86930 4.90825 4.98519 5.13503 5.20481 5.30852 5.32166 5.45720 5.49061 5.55378 5.58679 5.60931 5.62191 5.80334 5.83745 5.98686 6.12306 6.42873 6.50916 6.79419 6.94955 7.23366 7.51746 7.58219 7.69142 7.86744 7.93038 8.33833 8.97836 9.56014 11.06335 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026949 B = 0.002633 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.744926 B =10633.648678 C =11542.749160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C 0.182 3.818 4 N -0.504 5.504 5 C 0.372 3.628 6 O -0.460 6.460 7 C -0.192 4.192 8 C 0.506 3.494 9 O -0.491 6.491 10 O -0.355 6.355 11 C 0.070 3.930 12 C -0.108 4.108 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.003 4.003 23 C -0.160 4.160 24 C -0.111 4.111 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.406 0.594 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.157 0.843 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 -26.317 -3.521 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C 0.043 3.957 4 N -0.223 5.223 5 C 0.192 3.808 6 O -0.268 6.268 7 C -0.196 4.196 8 C 0.349 3.651 9 O -0.379 6.379 10 O -0.272 6.272 11 C -0.003 4.003 12 C -0.146 4.146 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.028 4.028 23 C -0.163 4.163 24 C -0.168 4.168 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.266 0.734 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.175 0.825 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.538 -26.124 -4.665 27.877 hybrid contribution 0.884 1.143 1.294 1.940 sum -7.654 -24.981 -3.371 26.344 Atomic orbital electron populations 1.21700 0.93560 1.02413 1.02672 1.20673 0.96969 0.90138 1.04172 1.21157 0.91537 0.96230 0.86732 1.67167 1.15457 1.09564 1.30102 1.19097 0.90495 0.86297 0.84867 1.84724 1.37274 1.72978 1.31812 1.20385 1.10127 0.94316 0.94816 1.20594 0.75486 0.86080 0.82920 1.90868 1.47821 1.69096 1.30124 1.86527 1.76804 1.30011 1.33876 1.23548 0.99054 0.76266 1.01425 1.21772 1.01604 0.99159 0.92069 1.19053 0.96505 0.88004 0.97769 1.21159 1.44460 0.98065 0.92309 0.92440 1.25035 0.95452 0.97175 0.96832 1.69964 1.45341 1.09796 1.28213 0.86542 0.78539 0.78297 0.84323 1.20608 1.21179 1.19817 1.21869 0.90091 0.93009 0.97860 1.20694 1.03372 0.95140 0.97049 1.20819 1.02848 1.00215 0.92896 0.92110 0.91576 0.92308 0.89576 0.89208 0.73351 0.91366 0.91343 0.92115 0.92135 0.96210 0.96188 0.92864 0.82513 0.90493 0.90606 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.08 -0.51 5.80 -27.88 -0.16 -0.68 16 3 C 0.18 1.73 6.03 -82.52 -0.50 1.23 16 4 N -0.50 -6.10 10.28 -9.19 -0.09 -6.19 16 5 C 0.37 4.92 7.77 -16.59 -0.13 4.79 16 6 O -0.46 -6.06 11.66 -39.70 -0.46 -6.52 16 7 C -0.19 -2.57 5.90 -104.71 -0.62 -3.19 16 8 C 0.51 8.21 7.90 34.45 0.27 8.48 16 9 O -0.49 -9.04 14.99 -26.56 -0.40 -9.44 16 10 O -0.36 -5.96 9.54 -40.65 -0.39 -6.34 16 11 C 0.07 1.29 5.48 37.16 0.20 1.49 16 12 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 13 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 14 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 18 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.00 -0.03 9.40 -38.87 -0.37 -0.40 16 23 C -0.16 -1.41 5.89 -104.54 -0.62 -2.03 16 24 C -0.11 -0.61 9.61 36.01 0.35 -0.26 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.37 5.91 -51.93 -0.31 0.06 16 30 H 0.41 3.57 9.06 45.56 0.41 3.99 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.16 1.50 7.70 -52.49 -0.40 1.09 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.29 5.93 -51.93 -0.31 -0.02 16 41 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -33.70 351.65 -7.44 -41.14 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.22 Total: -2.00 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.90 Total: -6.33 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.64 Total: -32.24 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.25 Total: -22.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.70 -7.44 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924132308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.155 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds