Wall clock time and date at job start Tue Mar 31 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47012 * 2 1 4 4 N 1.31908 * 119.39645 * 270.27200 * 3 2 1 5 5 C 1.32213 * 121.80154 * 180.28966 * 4 3 2 6 6 O 1.35413 * 119.80362 * 179.70624 * 5 4 3 7 7 C 1.40367 * 120.39021 * 359.43395 * 5 4 3 8 8 C 1.47387 * 120.60426 * 180.25092 * 7 5 4 9 9 O 1.21512 * 120.00054 * 0.02562 * 8 7 5 10 10 O 1.34757 * 120.00039 * 180.02562 * 8 7 5 11 11 C 1.45197 * 116.99647 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46829 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47106 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47283 * 179.97438 * 13 12 11 15 15 H 1.08010 * 119.99708 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00381 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00063 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00286 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47249 * 89.99653 * 18 16 14 20 20 H 1.48496 * 109.47216 * 209.99571 * 18 16 14 21 21 H 1.48504 * 109.46642 * 329.99515 * 18 16 14 22 22 C 1.40011 * 118.79494 * 0.27470 * 7 5 4 23 23 C 1.38321 * 119.40116 * 89.99628 * 3 2 1 24 24 C 1.50708 * 120.26638 * 359.97438 * 23 3 2 25 25 H 1.09002 * 109.47157 * 60.00347 * 1 2 3 26 26 H 1.09002 * 109.46852 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47353 * 300.00359 * 1 2 3 28 28 H 1.08997 * 109.47153 * 240.00126 * 2 1 3 29 29 H 1.08992 * 109.47201 * 119.99615 * 2 1 3 30 30 H 0.96700 * 114.00289 * 269.73082 * 6 5 4 31 31 H 1.08999 * 109.47540 * 299.99636 * 11 10 8 32 32 H 1.09004 * 109.47400 * 59.99897 * 11 10 8 33 33 H 1.08999 * 109.46836 * 300.00157 * 12 11 10 34 34 H 1.08996 * 109.46994 * 60.00059 * 12 11 10 35 35 H 1.08999 * 109.47082 * 300.00164 * 13 12 11 36 36 H 1.09004 * 109.47118 * 59.99990 * 13 12 11 37 37 H 0.97004 * 120.00548 * 180.02562 * 17 16 14 38 38 H 1.07994 * 120.83342 * 179.97438 * 22 7 5 39 39 H 1.08993 * 109.47257 * 270.01706 * 24 23 3 40 40 H 1.08993 * 109.46886 * 30.02404 * 24 23 3 41 41 H 1.09004 * 109.46441 * 150.02052 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2430 2.0332 -1.1492 5 6 2.6884 3.2768 -1.2047 6 8 2.8962 3.8642 -2.4070 7 6 2.9417 3.9936 -0.0248 8 6 3.4331 5.3820 -0.0812 9 8 3.6220 5.9165 -1.1560 10 8 3.6728 6.0588 1.0592 11 6 4.1546 7.4222 0.9277 12 6 4.3674 8.0242 2.3181 13 6 4.8757 9.4606 2.1796 14 6 5.0847 10.0538 3.5490 15 1 4.8761 9.4649 4.4302 16 6 5.5420 11.3481 3.6773 17 7 5.7964 12.0650 2.6045 18 14 5.8017 12.0832 5.3749 19 1 7.1905 11.8115 5.8248 20 1 5.5776 13.5501 5.3187 21 1 4.8432 11.4723 6.3306 22 6 2.7197 3.3656 1.2067 23 6 2.2586 2.0611 1.2051 24 6 2.0043 1.3438 2.5058 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8899 30 1 3.7894 3.7404 -2.7562 31 1 5.0986 7.4230 0.3827 32 1 3.4204 8.0162 0.3834 33 1 3.4232 8.0234 2.8627 34 1 5.1014 7.4303 2.8627 35 1 5.8200 9.4609 1.6352 36 1 4.1420 10.0547 1.6348 37 1 6.1185 12.9755 2.6946 38 1 2.9041 3.8862 2.1347 39 1 0.9742 1.5135 2.8190 40 1 2.1716 0.2753 2.3702 41 1 2.6834 1.7239 3.2691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924132308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:44 Heat of formation + Delta-G solvation = -138.592634 kcal Electronic energy + Delta-G solvation = -22572.036271 eV Core-core repulsion = 19029.725910 eV Total energy + Delta-G solvation = -3542.310361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.22302 -41.00272 -38.76087 -37.66873 -35.96160 -35.12336 -34.45759 -33.66855 -31.73828 -29.04083 -27.79642 -26.46828 -25.30542 -23.91063 -23.07251 -22.19087 -21.78842 -19.83033 -18.90412 -18.51564 -18.22567 -17.77514 -17.31247 -16.75330 -16.48822 -15.96364 -15.57365 -15.18043 -14.97702 -14.76708 -14.34290 -14.17068 -13.92772 -13.88397 -13.72647 -13.52188 -13.18347 -12.98100 -12.83066 -12.73164 -12.52090 -12.42709 -12.27071 -12.10617 -11.92223 -11.73136 -11.50909 -11.44630 -11.26834 -11.00926 -10.62872 -10.57796 -9.80403 -8.22083 -6.33790 -0.73410 -0.05390 1.32370 1.40263 1.43166 1.44547 1.54714 2.28852 2.41076 2.53068 3.11920 3.27497 3.47848 3.59250 3.71680 3.97536 4.00427 4.03368 4.19266 4.34550 4.38099 4.41061 4.53136 4.66278 4.76757 4.78115 4.84372 4.90670 5.02271 5.05944 5.09279 5.15759 5.23754 5.31976 5.32862 5.48518 5.55782 5.62648 5.79434 6.18051 6.39938 6.56298 6.68873 6.82270 7.35851 8.90180 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026949 B = 0.002633 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.744926 B =10633.648678 C =11542.749160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C 0.180 3.820 4 N -0.521 5.521 5 C 0.360 3.640 6 O -0.479 6.479 7 C -0.213 4.213 8 C 0.507 3.493 9 O -0.521 6.521 10 O -0.350 6.350 11 C 0.079 3.921 12 C -0.092 4.092 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.260 1.260 22 C -0.005 4.005 23 C -0.149 4.149 24 C -0.111 4.111 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.419 0.581 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.070 0.930 35 H -0.003 1.003 36 H -0.005 1.005 37 H 0.264 0.736 38 H 0.169 0.831 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 -28.789 -1.067 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C 0.042 3.958 4 N -0.240 5.240 5 C 0.181 3.819 6 O -0.289 6.289 7 C -0.218 4.218 8 C 0.352 3.648 9 O -0.411 6.411 10 O -0.266 6.266 11 C 0.006 3.994 12 C -0.129 4.129 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.030 4.030 23 C -0.151 4.151 24 C -0.168 4.168 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.139 0.861 30 H 0.281 0.719 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.015 0.985 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.186 0.814 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.226 -28.626 -2.206 30.157 hybrid contribution 1.053 1.780 0.491 2.126 sum -8.174 -26.846 -1.715 28.115 Atomic orbital electron populations 1.21702 0.93006 1.03575 1.01872 1.20845 0.97238 0.88024 1.05681 1.21874 0.90058 0.97542 0.86326 1.67252 1.16094 1.09089 1.31598 1.19209 0.91142 0.86865 0.84698 1.84668 1.38558 1.73434 1.32219 1.20277 1.12473 0.92841 0.96228 1.21122 0.74597 0.86931 0.82144 1.90848 1.49358 1.69960 1.30945 1.86501 1.76883 1.28899 1.34344 1.23197 0.98869 0.77352 0.99999 1.21457 1.01927 0.96228 0.93330 1.18940 0.94879 0.90904 0.96485 1.21617 1.44284 0.98648 0.93411 0.91498 1.26033 0.95028 0.97763 1.01234 1.70105 1.46294 1.10249 1.30817 0.85375 0.78936 0.77249 0.79057 1.19676 1.20944 1.18434 1.22083 0.89870 0.93889 0.97126 1.21073 1.01339 0.94277 0.98446 1.20962 1.03807 1.01101 0.90890 0.94303 0.89460 0.91732 0.89650 0.86147 0.71865 0.91653 0.92079 0.91325 0.91097 0.98472 0.98631 0.92700 0.81394 0.89178 0.88374 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 71.98 0.71 -0.56 16 2 C -0.08 -0.77 5.80 29.85 0.17 -0.60 16 3 C 0.18 3.07 6.03 42.57 0.26 3.33 16 4 N -0.52 -12.34 10.28 -296.03 -3.04 -15.38 16 5 C 0.36 9.67 7.77 85.15 0.66 10.33 16 6 O -0.48 -13.17 11.66 -66.26 -0.77 -13.94 16 7 C -0.21 -5.72 5.90 -19.92 -0.12 -5.84 16 8 C 0.51 16.77 7.90 70.23 0.55 17.33 16 9 O -0.52 -19.93 14.99 26.77 0.40 -19.53 16 10 O -0.35 -11.70 9.54 -56.68 -0.54 -12.24 16 11 C 0.08 2.98 5.48 71.98 0.39 3.37 16 12 C -0.09 -3.76 5.53 30.60 0.17 -3.59 16 13 C 0.03 1.32 4.97 29.85 0.15 1.47 16 14 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 15 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 16 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 17 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 18 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 C 0.00 -0.10 9.40 22.73 0.21 0.12 16 23 C -0.15 -2.25 5.89 -19.81 -0.12 -2.37 16 24 C -0.11 -0.76 9.61 71.24 0.68 -0.08 16 25 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.12 0.43 5.91 -2.39 -0.01 0.42 16 30 H 0.42 7.98 9.06 -74.06 -0.67 7.31 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 36 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 37 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.17 2.89 7.70 -2.91 -0.02 2.87 16 39 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.10 0.26 5.93 -2.39 -0.01 0.25 16 41 H 0.08 0.50 8.09 -2.38 -0.02 0.48 16 Total: -1.00 -73.94 351.65 3.16 -70.78 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.37 Total: 8.23 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.43 Total: -7.00 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -2.76 Total: -72.08 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.91 Total: -45.72 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.94 3.16 -70.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924132308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.811 kcal (2) G-P(sol) polarization free energy of solvation -73.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds