Wall clock time and date at job start Tue Mar 31 2020 06:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00154 * 2 1 4 4 C 1.53001 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47010 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.35910 * 117.00471 * 180.02562 * 6 5 4 8 8 C 1.38867 * 119.97929 * 359.97438 * 7 6 5 9 9 C 1.38261 * 120.25212 * 180.02562 * 8 7 6 10 10 C 1.37984 * 120.21333 * 359.72307 * 9 8 7 11 11 C 1.39636 * 119.95417 * 0.55174 * 10 9 8 12 12 C 1.47739 * 120.12183 * 179.72492 * 11 10 9 13 13 O 1.21593 * 120.00194 * 173.67421 * 12 11 10 14 14 N 1.34780 * 119.99852 * 353.94514 * 12 11 10 15 15 C 1.36881 * 119.99855 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99855 * 0.02562 * 15 14 12 17 17 C 1.39040 * 119.99727 * 180.02562 * 15 14 12 18 18 N 1.31357 * 120.00215 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99707 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47021 * 89.99964 * 19 17 15 21 21 H 1.48499 * 109.47140 * 210.00081 * 19 17 15 22 22 H 1.48497 * 109.47241 * 330.00079 * 19 17 15 23 23 C 1.38431 * 119.98267 * 179.97438 * 7 6 5 24 24 C 1.50701 * 120.10611 * 359.97438 * 23 7 6 25 25 H 1.08997 * 109.47721 * 299.99495 * 1 2 3 26 26 H 1.08998 * 109.47214 * 59.99932 * 1 2 3 27 27 H 1.09004 * 109.47386 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46929 * 60.00134 * 3 2 1 29 29 H 1.08998 * 109.47465 * 300.00320 * 3 2 1 30 30 H 1.09007 * 109.46574 * 60.00490 * 4 3 2 31 31 H 1.08998 * 109.47333 * 300.00656 * 4 3 2 32 32 H 1.08998 * 109.47123 * 60.00445 * 5 4 3 33 33 H 1.08998 * 109.47556 * 300.00455 * 5 4 3 34 34 H 1.08007 * 119.87548 * 0.04599 * 8 7 6 35 35 H 1.08001 * 119.88995 * 179.97438 * 9 8 7 36 36 H 1.07997 * 120.02307 * 180.27798 * 10 9 8 37 37 H 0.96992 * 120.00055 * 0.02562 * 14 12 11 38 38 H 0.97002 * 119.99828 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.46857 * 263.51576 * 24 23 7 40 40 H 1.08998 * 109.47022 * 23.51272 * 24 23 7 41 41 H 1.09004 * 109.46659 * 143.51345 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5823 0.0013 6 8 5.5822 2.4695 0.0013 7 6 6.2930 3.6280 0.0024 8 6 5.6306 4.8485 0.0029 9 6 6.3480 6.0304 0.0034 10 6 7.7276 6.0052 0.0093 11 6 8.4027 4.7829 0.0030 12 6 9.8797 4.7517 0.0031 13 8 10.4655 3.6919 0.1136 14 7 10.5780 5.8986 -0.1139 15 6 11.9465 5.8696 -0.1144 16 1 12.4667 4.9277 -0.0214 17 6 12.6668 7.0528 -0.2346 18 7 12.0341 8.1984 -0.3471 19 14 14.5345 7.0132 -0.2359 20 1 15.0254 6.8636 -1.6294 21 1 15.0568 8.2784 0.3398 22 1 15.0058 5.8660 0.5808 23 6 7.6768 3.5906 0.0030 24 6 8.3972 2.2669 0.0030 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8573 0.6436 -0.8892 31 1 3.8567 0.6438 0.8908 32 1 3.8357 3.1230 0.8913 33 1 3.8364 3.1235 -0.8886 34 1 4.5508 4.8746 0.0032 35 1 5.8269 6.9763 0.0034 36 1 8.2849 6.9303 0.0142 37 1 10.1108 6.7444 -0.1978 38 1 12.5367 9.0239 -0.4306 39 1 8.6723 2.0031 1.0241 40 1 7.7434 1.4974 -0.4074 41 1 9.2969 2.3430 -0.6077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:52 Heat of formation + Delta-G solvation = -122.771981 kcal Electronic energy + Delta-G solvation = -22567.524587 eV Core-core repulsion = 19025.900260 eV Total energy + Delta-G solvation = -3541.624326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.47873 -40.15287 -38.93627 -38.00123 -36.20716 -34.26192 -33.47407 -33.20849 -31.08544 -28.24129 -27.93048 -26.93219 -26.15979 -24.19424 -22.82831 -22.33173 -21.12230 -20.02975 -19.03152 -17.72723 -17.54904 -17.22056 -16.77550 -16.63429 -16.54484 -16.37094 -15.81918 -15.74470 -15.64545 -14.85293 -14.62066 -14.43860 -14.06559 -13.87524 -13.57231 -13.13377 -13.03493 -12.96840 -12.91959 -12.78069 -12.61691 -12.41999 -12.33927 -12.11526 -12.07020 -11.75265 -11.62720 -11.53852 -10.62606 -10.20201 -10.10848 -9.77943 -9.10994 -8.55071 -5.99312 -0.04972 0.44433 1.39848 1.40977 1.54405 1.97610 2.08310 2.27492 2.82068 2.95485 3.21080 3.28900 3.82393 3.88772 3.92387 4.08957 4.10836 4.17018 4.23694 4.33807 4.37559 4.43667 4.49812 4.57190 4.57204 4.65770 4.78053 4.87163 4.88052 4.93719 5.04150 5.10525 5.27424 5.33733 5.35797 5.46511 5.58234 5.74537 5.98606 6.21806 6.46532 6.52110 7.03580 7.44626 8.01829 8.62320 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.046171 B = 0.002555 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.300508 B =10958.053001 C =11521.353115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.067 3.933 4 C -0.117 4.117 5 C 0.057 3.943 6 O -0.325 6.325 7 C 0.119 3.881 8 C -0.183 4.183 9 C -0.080 4.080 10 C -0.141 4.141 11 C -0.095 4.095 12 C 0.463 3.537 13 O -0.620 6.620 14 N -0.553 5.553 15 C -0.335 4.335 16 H 0.084 0.916 17 C -0.011 4.011 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.267 1.267 22 H -0.272 1.272 23 C -0.094 4.094 24 C -0.094 4.094 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.125 0.875 37 H 0.397 0.603 38 H 0.282 0.718 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.996 -5.585 0.161 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.009 4.009 4 C -0.154 4.154 5 C -0.018 4.018 6 O -0.239 6.239 7 C 0.074 3.926 8 C -0.202 4.202 9 C -0.098 4.098 10 C -0.160 4.160 11 C -0.099 4.099 12 C 0.253 3.747 13 O -0.509 6.509 14 N -0.188 5.188 15 C -0.465 4.465 16 H 0.102 0.898 17 C -0.212 4.212 18 N -0.550 5.550 19 Si 0.822 3.178 20 H -0.194 1.194 21 H -0.191 1.191 22 H -0.197 1.197 23 C -0.096 4.096 24 C -0.151 4.151 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.187 0.813 35 H 0.184 0.816 36 H 0.143 0.857 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.346 -6.416 0.213 24.212 hybrid contribution 0.749 0.780 -0.020 1.081 sum -22.597 -5.637 0.193 23.290 Atomic orbital electron populations 1.22934 0.79136 1.03835 1.01116 1.87827 1.21753 1.28797 1.95692 1.22366 0.91810 0.84706 1.02054 1.21319 0.94103 0.95872 1.04126 1.22847 0.77073 0.98456 1.03412 1.86020 1.20693 1.28377 1.88829 1.18565 0.89741 0.86101 0.98241 1.21670 1.01846 0.90618 1.06032 1.21195 0.92203 0.99506 0.96903 1.21412 0.96143 0.96091 1.02357 1.19749 0.92273 0.94361 1.03499 1.18434 0.87645 0.84198 0.84442 1.90513 1.72028 1.30575 1.57782 1.41889 1.06779 1.07933 1.62167 1.19791 0.82160 0.95196 1.49317 0.89756 1.26179 1.05540 0.93783 0.95661 1.69642 1.38705 0.98635 1.48065 0.84839 0.75948 0.78131 0.78881 1.19403 1.19149 1.19652 1.19347 0.91325 0.95490 1.03422 1.20621 0.99716 0.92792 1.01950 0.92883 0.92886 0.88821 0.91390 0.91366 0.90986 0.91017 0.89906 0.89890 0.81312 0.81583 0.85718 0.76702 0.90809 0.92748 0.91316 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.06 10.70 -148.98 -1.59 -8.65 16 3 C 0.07 0.83 5.94 71.98 0.43 1.26 16 4 C -0.12 -1.88 5.95 30.59 0.18 -1.70 16 5 C 0.06 0.93 4.74 71.98 0.34 1.27 16 6 O -0.32 -8.70 9.07 -92.53 -0.84 -9.54 16 7 C 0.12 3.62 6.65 22.47 0.15 3.77 16 8 C -0.18 -4.32 9.03 22.43 0.20 -4.12 16 9 C -0.08 -2.04 10.02 22.22 0.22 -1.82 16 10 C -0.14 -4.90 9.52 22.55 0.21 -4.69 16 11 C -0.10 -4.08 5.87 -20.10 -0.12 -4.20 16 12 C 0.46 24.45 7.65 86.75 0.66 25.12 16 13 O -0.62 -36.24 12.91 -4.01 -0.05 -36.29 16 14 N -0.55 -30.05 5.23 -309.71 -1.62 -31.67 16 15 C -0.34 -19.47 9.68 84.10 0.81 -18.66 16 16 H 0.08 5.17 7.15 -2.91 -0.02 5.15 16 17 C -0.01 -0.57 5.50 84.96 0.47 -0.10 16 18 N -0.91 -48.98 13.05 21.68 0.28 -48.70 16 19 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C -0.09 -3.67 5.93 -19.49 -0.12 -3.78 16 24 C -0.09 -3.82 8.58 71.24 0.61 -3.21 16 25 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.05 7.66 -2.39 -0.02 1.03 16 33 H 0.08 1.05 7.66 -2.39 -0.02 1.03 16 34 H 0.17 2.44 6.28 -2.91 -0.02 2.42 16 35 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.12 4.37 6.44 -2.91 -0.02 4.35 16 37 H 0.40 20.39 5.96 -92.71 -0.55 19.84 16 38 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.42 7.34 -2.39 -0.02 2.40 16 41 H 0.07 3.11 5.84 -2.38 -0.01 3.09 16 Total: -1.00 -71.95 343.75 4.01 -67.94 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.49 Total: 31.43 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.31 Total: -9.36 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.34 Total: -80.37 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -2.49 Total: -54.49 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -71.95 4.01 -67.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.835 kcal (2) G-P(sol) polarization free energy of solvation -71.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds