Wall clock time and date at job start Tue Mar 31 2020 07:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47274 * 2 1 4 4 C 1.53004 * 109.46658 * 60.00339 * 3 2 1 5 5 O 1.42897 * 109.47367 * 300.00473 * 3 2 1 6 6 C 1.50691 * 109.47323 * 179.97438 * 3 2 1 7 7 O 1.21292 * 119.99952 * 335.00563 * 6 3 2 8 8 N 1.34772 * 120.00413 * 155.00264 * 6 3 2 9 9 C 1.46500 * 120.00610 * 180.02562 * 8 6 3 10 10 C 1.50695 * 109.47200 * 179.97438 * 9 8 6 11 11 C 1.38302 * 119.93412 * 269.72652 * 10 9 8 12 12 C 1.38102 * 120.07171 * 179.72952 * 11 10 9 13 13 C 1.38891 * 119.92487 * 0.56596 * 12 11 10 14 14 O 1.35749 * 120.06559 * 179.68333 * 13 12 11 15 15 C 1.34827 * 116.99816 * 174.48796 * 14 13 12 16 16 H 1.08000 * 119.99941 * 5.05807 * 15 14 13 17 17 C 1.38653 * 119.99851 * 185.05792 * 15 14 13 18 18 N 1.31555 * 120.00303 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00155 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46561 * 60.00000 * 19 17 15 21 21 H 1.48490 * 109.47459 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47327 * 300.00537 * 19 17 15 23 23 C 1.38875 * 119.86262 * 359.70808 * 13 12 11 24 24 C 1.38096 * 119.93141 * 359.97438 * 23 13 12 25 25 H 1.08998 * 109.47027 * 300.00099 * 1 2 3 26 26 H 1.09002 * 109.46909 * 59.99609 * 1 2 3 27 27 H 1.08996 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46992 * 240.00676 * 2 1 3 29 29 H 1.08994 * 109.47077 * 120.00633 * 2 1 3 30 30 H 1.08997 * 109.46789 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.46917 * 299.99684 * 4 3 2 32 32 H 1.09002 * 109.47418 * 59.99674 * 4 3 2 33 33 H 0.96703 * 113.99847 * 299.99514 * 5 3 2 34 34 H 0.97008 * 119.99564 * 359.97438 * 8 6 3 35 35 H 1.08994 * 109.47028 * 300.00079 * 9 8 6 36 36 H 1.09007 * 109.46745 * 60.00215 * 9 8 6 37 37 H 1.08001 * 119.96305 * 359.97438 * 11 10 9 38 38 H 1.07997 * 120.03602 * 180.27942 * 12 11 10 39 39 H 0.97001 * 120.00609 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.03306 * 179.97438 * 23 13 12 41 41 H 1.08000 * 119.96699 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 8 1.5637 2.1162 -1.1667 6 6 3.5470 1.4425 0.0006 7 8 4.1532 0.4905 0.4449 8 7 4.2211 2.5002 -0.4924 9 6 5.6861 2.5001 -0.4924 10 6 6.1887 3.7874 -1.0932 11 6 6.4242 3.8684 -2.4536 12 6 6.8794 5.0485 -3.0080 13 6 7.1119 6.1511 -2.1961 14 8 7.5655 7.3106 -2.7372 15 6 7.6612 8.3740 -1.9139 16 1 7.4612 8.2597 -0.8587 17 6 8.0164 9.6142 -2.4218 18 7 8.2595 9.7536 -3.7072 19 14 8.1484 11.0878 -1.2813 20 1 9.1742 10.8186 -0.2417 21 1 8.5410 12.2865 -2.0647 22 1 6.8356 11.3292 -0.6305 23 6 6.8798 6.0649 -0.8296 24 6 6.4184 4.8840 -0.2823 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.8930 3.1914 1.2491 31 1 0.4401 2.1637 1.2493 32 1 1.8934 1.6497 2.1393 33 1 1.8490 1.7127 -1.9979 34 1 3.7362 3.2614 -0.8481 35 1 6.0494 2.4103 0.5314 36 1 6.0493 1.6582 -1.0820 37 1 6.2481 3.0090 -3.0836 38 1 7.0588 5.1124 -4.0711 39 1 8.5084 10.6211 -4.0626 40 1 7.0601 6.9204 -0.1957 41 1 6.2381 4.8161 0.7804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931748730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:30 Heat of formation + Delta-G solvation = -125.111537 kcal Electronic energy + Delta-G solvation = -22836.903319 eV Core-core repulsion = 19295.177542 eV Total energy + Delta-G solvation = -3541.725777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40729 -40.76437 -38.71403 -38.10131 -35.77589 -34.30202 -34.03525 -31.87007 -31.58702 -30.32422 -27.75986 -26.76483 -25.69148 -23.66458 -22.79513 -22.08176 -20.98372 -19.89423 -19.29162 -18.78081 -17.32585 -16.85084 -16.66420 -16.42143 -16.27762 -15.98544 -15.57725 -15.55198 -15.26119 -14.92140 -14.43637 -14.35888 -14.05348 -13.73979 -13.58543 -13.39702 -13.25370 -13.06429 -12.97203 -12.78846 -12.54765 -12.48409 -12.39961 -12.25346 -12.15163 -11.85597 -11.43756 -11.21949 -10.83501 -10.51432 -10.11716 -9.82657 -9.01929 -8.48844 -6.17297 0.52631 0.56204 1.35535 1.45207 1.48527 1.51422 2.16279 2.18784 2.83186 3.14517 3.17048 3.47402 3.61879 3.77933 3.86903 3.93270 4.00875 4.15557 4.41114 4.44888 4.52797 4.54906 4.67079 4.69920 4.78393 4.83471 4.90828 5.02217 5.02763 5.11724 5.12906 5.24693 5.28749 5.38323 5.45965 5.50838 5.67778 5.72725 6.00438 6.14191 6.39607 6.69092 6.95779 7.15527 7.74626 8.73702 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027301 B = 0.002795 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.365562 B =10014.353021 C =10299.300311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.127 3.873 4 C -0.141 4.141 5 O -0.551 6.551 6 C 0.485 3.515 7 O -0.576 6.576 8 N -0.706 5.706 9 C 0.181 3.819 10 C -0.184 4.184 11 C -0.043 4.043 12 C -0.204 4.204 13 C 0.122 3.878 14 O -0.228 6.228 15 C -0.415 4.415 16 H 0.103 0.897 17 C -0.021 4.021 18 N -0.919 5.919 19 Si 1.017 2.983 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.244 4.244 24 C -0.047 4.047 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.393 0.607 34 H 0.413 0.587 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.149 0.851 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.121 0.879 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.976 -15.759 8.302 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.083 3.917 4 C -0.199 4.199 5 O -0.358 6.358 6 C 0.272 3.728 7 O -0.456 6.456 8 N -0.358 5.358 9 C 0.059 3.941 10 C -0.185 4.185 11 C -0.061 4.061 12 C -0.223 4.223 13 C 0.071 3.929 14 O -0.134 6.134 15 C -0.491 4.491 16 H 0.121 0.879 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.836 3.164 20 H -0.182 1.182 21 H -0.197 1.197 22 H -0.181 1.181 23 C -0.263 4.263 24 C -0.065 4.065 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.243 0.757 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.166 0.834 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.669 -15.824 8.674 22.638 hybrid contribution 0.665 0.951 -0.493 1.260 sum -13.004 -14.874 8.182 21.384 Atomic orbital electron populations 1.21745 0.93239 1.02351 1.02899 1.21959 0.97885 0.93747 1.03494 1.21398 0.86509 0.94695 0.89112 1.21839 1.03661 1.00520 0.93836 1.86579 1.76389 1.56878 1.15998 1.21952 0.91890 0.81858 0.77149 1.90691 1.71111 1.35900 1.47904 1.46250 1.07120 1.20668 1.61765 1.19932 0.79552 0.94050 1.00597 1.19493 1.09477 0.95766 0.93739 1.20878 0.94879 0.95858 0.94527 1.20461 1.09684 0.92757 0.99432 1.20004 0.92080 0.87615 0.93184 1.83947 1.73653 1.16644 1.39168 1.21793 1.49319 0.86016 0.91980 0.87942 1.26579 0.95751 1.01101 0.98454 1.70168 1.45167 1.26046 1.14257 0.84663 0.79808 0.74992 0.76890 1.18199 1.19701 1.18088 1.21240 1.10301 1.00437 0.94318 1.20936 0.94760 0.90953 0.99899 0.91780 0.91902 0.91737 0.91516 0.90900 0.91689 0.88957 0.90370 0.75724 0.75067 0.91204 0.90696 0.83368 0.86588 0.91759 0.86173 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.41 71.98 0.68 -1.03 16 2 C -0.13 -2.03 4.71 30.60 0.14 -1.89 16 3 C 0.13 2.13 1.00 -11.54 -0.01 2.12 16 4 C -0.14 -2.15 8.47 71.98 0.61 -1.54 16 5 O -0.55 -8.36 11.62 -148.98 -1.73 -10.09 16 6 C 0.49 10.86 6.69 87.65 0.59 11.45 16 7 O -0.58 -16.87 16.10 -3.07 -0.05 -16.92 16 8 N -0.71 -15.13 5.46 -466.80 -2.55 -17.68 16 9 C 0.18 4.33 5.80 85.63 0.50 4.83 16 10 C -0.18 -5.24 5.25 -19.84 -0.10 -5.35 16 11 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 12 C -0.20 -8.14 9.99 22.39 0.22 -7.92 16 13 C 0.12 5.81 6.65 22.58 0.15 5.96 16 14 O -0.23 -13.34 9.76 -22.70 -0.22 -13.56 16 15 C -0.42 -23.56 9.49 67.92 0.64 -22.92 16 16 H 0.10 5.30 5.20 -2.91 -0.02 5.29 16 17 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 18 N -0.92 -55.44 13.67 21.61 0.30 -55.15 16 19 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 23 C -0.24 -10.04 9.17 22.39 0.21 -9.84 16 24 C -0.05 -1.51 9.69 22.25 0.22 -1.29 16 25 H 0.06 0.69 6.43 -2.39 -0.02 0.68 16 26 H 0.06 0.74 7.68 -2.39 -0.02 0.73 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.28 7.87 -2.39 -0.02 1.26 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.16 6.43 -2.39 -0.02 1.15 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.39 3.86 9.04 -74.05 -0.67 3.19 16 34 H 0.41 8.33 7.90 -92.70 -0.73 7.60 16 35 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 36 H 0.07 1.75 8.08 -2.38 -0.02 1.73 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 39 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 41 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -71.06 346.39 1.95 -69.10 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -0.34 Total: 29.60 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 4.52 Total: -29.21 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -2.25 Total: -72.83 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -2.00 Total: -40.57 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -71.06 1.95 -69.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931748730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.010 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds