Wall clock time and date at job start Tue Mar 31 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47076 * 305.00401 * 3 2 1 5 5 O 1.42902 * 109.47000 * 64.99971 * 3 2 1 6 6 C 1.50699 * 109.47387 * 184.99796 * 3 2 1 7 7 O 1.21282 * 119.99760 * 25.00321 * 6 3 2 8 8 N 1.34768 * 120.00150 * 204.99947 * 6 3 2 9 9 C 1.46503 * 120.00179 * 180.02562 * 8 6 3 10 10 C 1.50701 * 109.47448 * 180.02562 * 9 8 6 11 11 C 1.38299 * 119.93217 * 269.73027 * 10 9 8 12 12 C 1.38093 * 120.06953 * 179.72477 * 11 10 9 13 13 C 1.38883 * 119.92808 * 0.56550 * 12 11 10 14 14 O 1.35754 * 120.06438 * 179.68623 * 13 12 11 15 15 C 1.34826 * 116.99724 * 174.49160 * 14 13 12 16 16 H 1.07998 * 120.00100 * 5.04739 * 15 14 13 17 17 C 1.38654 * 119.99970 * 185.05457 * 15 14 13 18 18 N 1.31562 * 120.00282 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00220 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47275 * 89.99838 * 19 17 15 21 21 H 1.48495 * 109.47094 * 210.00170 * 19 17 15 22 22 H 1.48506 * 109.46791 * 330.00186 * 19 17 15 23 23 C 1.38871 * 119.86468 * 359.70509 * 13 12 11 24 24 C 1.38101 * 119.93230 * 0.02562 * 23 13 12 25 25 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47211 * 299.99302 * 1 2 3 27 27 H 1.08994 * 109.47334 * 60.00081 * 1 2 3 28 28 H 1.09001 * 109.47400 * 240.00235 * 2 1 3 29 29 H 1.09001 * 109.47471 * 120.00287 * 2 1 3 30 30 H 1.09002 * 109.47342 * 299.99668 * 4 3 2 31 31 H 1.08999 * 109.47683 * 59.99717 * 4 3 2 32 32 H 1.09005 * 109.47066 * 179.97438 * 4 3 2 33 33 H 0.96698 * 113.99858 * 59.99915 * 5 3 2 34 34 H 0.97000 * 120.00448 * 0.02562 * 8 6 3 35 35 H 1.09002 * 109.46848 * 59.99850 * 9 8 6 36 36 H 1.09001 * 109.46885 * 300.00464 * 9 8 6 37 37 H 1.08005 * 119.96050 * 359.97425 * 11 10 9 38 38 H 1.07999 * 120.03730 * 180.26989 * 12 11 10 39 39 H 0.96996 * 120.00604 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.03853 * 179.97438 * 23 13 12 41 41 H 1.07997 * 119.96732 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1815 5 8 1.6620 2.0814 1.2211 6 6 3.5419 1.4444 -0.1238 7 8 4.1087 0.5065 -0.6435 8 7 4.2552 2.4882 0.3429 9 6 5.7153 2.4903 0.2221 10 6 6.2669 3.7602 0.8171 11 6 6.4356 4.8787 0.0213 12 6 6.9355 6.0456 0.5648 13 6 7.2799 6.0917 1.9094 14 8 7.7775 7.2355 2.4451 15 6 7.9838 7.2482 3.7775 16 1 7.8324 6.3488 4.3559 17 6 8.3903 8.4159 4.4050 18 7 8.5912 8.4284 5.7051 19 14 8.6528 9.9713 3.4045 20 1 7.3839 10.7402 3.3426 21 1 9.7037 10.8012 4.0463 22 1 9.0795 9.6089 2.0290 23 6 7.1145 4.9653 2.7047 24 6 6.6089 3.8030 2.1565 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7182 1.7119 -2.1130 31 1 0.3436 2.1979 -1.0920 32 1 1.7929 3.2270 -1.1813 33 1 2.0141 1.6542 2.0139 34 1 3.8020 3.2382 0.7589 35 1 5.9928 2.4312 -0.8303 36 1 6.1251 1.6320 0.7546 37 1 6.1723 4.8405 -1.0255 38 1 7.0629 6.9200 -0.0562 39 1 8.8759 9.2451 6.1441 40 1 7.3818 4.9980 3.7506 41 1 6.4805 2.9266 2.7743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931748735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:33 Heat of formation + Delta-G solvation = -100.146622 kcal Electronic energy + Delta-G solvation = -22862.298884 eV Core-core repulsion = 19321.655667 eV Total energy + Delta-G solvation = -3540.643217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45136 -39.31590 -37.58465 -36.94346 -34.64699 -33.39784 -32.49133 -30.53946 -30.34183 -29.46601 -26.39648 -25.48588 -24.46446 -22.22445 -21.82374 -20.64447 -20.13378 -18.37278 -17.98903 -17.36737 -16.42894 -15.97720 -15.65184 -15.12884 -14.97320 -14.68210 -14.18545 -14.12710 -13.90493 -13.55406 -13.45615 -13.00554 -12.80095 -12.73864 -12.68391 -12.40165 -12.28983 -12.12368 -12.00855 -11.74278 -11.50041 -11.21455 -11.00398 -10.86650 -10.80116 -10.73989 -10.24189 -9.59814 -9.50577 -9.07044 -8.96312 -8.40565 -7.50132 -6.51528 -4.18580 1.92005 2.00273 2.44633 3.13781 3.18383 3.21188 3.33819 3.83278 4.15416 4.32795 4.42105 4.54943 4.67130 4.72657 5.00426 5.04426 5.10259 5.16537 5.29019 5.31097 5.44992 5.52524 5.53562 5.64131 5.68435 5.70358 5.80718 5.91988 6.00489 6.01623 6.21650 6.39376 6.44077 6.65124 6.87071 7.09520 7.12086 7.16203 7.47250 7.53536 7.68819 7.92481 8.11843 8.82969 9.43418 10.55614 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.002814 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.485156 B = 9949.564167 C =10133.441114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.119 3.881 4 C -0.140 4.140 5 O -0.548 6.548 6 C 0.484 3.516 7 O -0.543 6.543 8 N -0.712 5.712 9 C 0.175 3.825 10 C -0.207 4.207 11 C -0.056 4.056 12 C -0.195 4.195 13 C 0.167 3.833 14 O -0.212 6.212 15 C -0.392 4.392 16 H 0.108 0.892 17 C 0.065 3.935 18 N -0.875 5.875 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.224 4.224 24 C -0.052 4.052 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.382 0.618 34 H 0.408 0.592 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.281 0.719 40 H 0.135 0.865 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 -12.271 -10.520 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.075 3.925 4 C -0.197 4.197 5 O -0.354 6.354 6 C 0.268 3.732 7 O -0.421 6.421 8 N -0.364 5.364 9 C 0.053 3.947 10 C -0.208 4.208 11 C -0.075 4.075 12 C -0.214 4.214 13 C 0.114 3.886 14 O -0.116 6.116 15 C -0.467 4.467 16 H 0.125 0.875 17 C -0.139 4.139 18 N -0.512 5.512 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.243 4.243 24 C -0.071 4.071 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.230 0.770 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.152 0.848 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.750 -12.174 -11.189 20.880 hybrid contribution 0.389 0.657 0.537 0.933 sum -12.362 -11.517 -10.652 19.973 Atomic orbital electron populations 1.21792 0.94642 1.01710 1.02609 1.21994 0.96847 0.94573 1.04025 1.21463 0.89392 0.94307 0.87327 1.21801 1.02236 1.00603 0.95045 1.86580 1.76748 1.56962 1.15133 1.21450 0.90433 0.82515 0.78772 1.90697 1.72225 1.35204 1.44001 1.46364 1.07891 1.21858 1.60241 1.20036 0.78654 0.95641 1.00370 1.19262 1.11319 0.95464 0.94781 1.20527 0.96966 0.91673 0.98317 1.20211 1.08682 0.99119 0.93370 1.19180 0.90767 0.86418 0.92263 1.83576 1.70888 1.31852 1.25323 1.20787 1.47169 1.00123 0.78645 0.87491 1.24491 0.95567 0.98585 0.95283 1.69640 1.43934 1.29628 1.08027 0.86172 0.78495 0.81366 0.80840 1.19777 1.20669 1.18317 1.21275 1.08183 0.93224 1.01588 1.20685 0.95813 0.96861 0.93711 0.92584 0.91978 0.92213 0.89776 0.91425 0.90549 0.90231 0.91303 0.77029 0.75641 0.91445 0.91449 0.86807 0.86336 0.90880 0.84766 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.32 37.16 0.35 -0.72 16 2 C -0.14 -1.18 4.84 -26.73 -0.13 -1.31 16 3 C 0.12 1.13 1.01 -91.77 -0.09 1.04 16 4 C -0.14 -1.19 8.34 37.16 0.31 -0.88 16 5 O -0.55 -4.91 11.83 -35.23 -0.42 -5.33 16 6 C 0.48 5.92 6.69 -10.99 -0.07 5.84 16 7 O -0.54 -8.42 15.99 5.56 0.09 -8.33 16 8 N -0.71 -8.50 5.46 -61.47 -0.34 -8.84 16 9 C 0.18 2.33 5.80 -5.19 -0.03 2.29 16 10 C -0.21 -3.14 5.25 -104.57 -0.55 -3.69 16 11 C -0.06 -0.88 9.69 -39.61 -0.38 -1.26 16 12 C -0.19 -3.61 9.99 -39.40 -0.39 -4.01 16 13 C 0.17 3.65 6.65 -39.11 -0.26 3.39 16 14 O -0.21 -5.38 8.59 0.05 0.00 -5.38 16 15 C -0.39 -10.68 9.95 30.89 0.31 -10.37 16 16 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 17 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 18 N -0.88 -24.64 13.96 55.48 0.77 -23.86 16 19 Si 0.91 21.05 28.62 -169.99 -4.86 16.19 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.22 -4.52 9.17 -39.40 -0.36 -4.89 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.45 7.82 -51.93 -0.41 0.04 16 27 H 0.06 0.39 6.34 -51.93 -0.33 0.06 16 28 H 0.08 0.81 7.68 -51.93 -0.40 0.41 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.59 6.35 -51.93 -0.33 0.26 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.38 2.46 9.04 45.56 0.41 2.87 16 34 H 0.41 4.63 7.90 -40.82 -0.32 4.31 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 38 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 39 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -30.10 345.06 -6.23 -36.34 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -4.89 Total: 8.15 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.79 Total: -14.14 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.44 Total: -32.70 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.33 Total: -19.04 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.10 -6.23 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931748735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.809 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds