Wall clock time and date at job start Tue Mar 31 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47076 * 305.00401 * 3 2 1 5 5 O 1.42902 * 109.47000 * 64.99971 * 3 2 1 6 6 C 1.50699 * 109.47387 * 184.99796 * 3 2 1 7 7 O 1.21282 * 119.99760 * 25.00321 * 6 3 2 8 8 N 1.34768 * 120.00150 * 204.99947 * 6 3 2 9 9 C 1.46503 * 120.00179 * 180.02562 * 8 6 3 10 10 C 1.50701 * 109.47448 * 180.02562 * 9 8 6 11 11 C 1.38299 * 119.93217 * 269.73027 * 10 9 8 12 12 C 1.38093 * 120.06953 * 179.72477 * 11 10 9 13 13 C 1.38883 * 119.92808 * 0.56550 * 12 11 10 14 14 O 1.35754 * 120.06438 * 179.68623 * 13 12 11 15 15 C 1.34826 * 116.99724 * 174.49160 * 14 13 12 16 16 H 1.07998 * 120.00100 * 5.04739 * 15 14 13 17 17 C 1.38654 * 119.99970 * 185.05457 * 15 14 13 18 18 N 1.31562 * 120.00282 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00220 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47275 * 89.99838 * 19 17 15 21 21 H 1.48495 * 109.47094 * 210.00170 * 19 17 15 22 22 H 1.48506 * 109.46791 * 330.00186 * 19 17 15 23 23 C 1.38871 * 119.86468 * 359.70509 * 13 12 11 24 24 C 1.38101 * 119.93230 * 0.02562 * 23 13 12 25 25 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47211 * 299.99302 * 1 2 3 27 27 H 1.08994 * 109.47334 * 60.00081 * 1 2 3 28 28 H 1.09001 * 109.47400 * 240.00235 * 2 1 3 29 29 H 1.09001 * 109.47471 * 120.00287 * 2 1 3 30 30 H 1.09002 * 109.47342 * 299.99668 * 4 3 2 31 31 H 1.08999 * 109.47683 * 59.99717 * 4 3 2 32 32 H 1.09005 * 109.47066 * 179.97438 * 4 3 2 33 33 H 0.96698 * 113.99858 * 59.99915 * 5 3 2 34 34 H 0.97000 * 120.00448 * 0.02562 * 8 6 3 35 35 H 1.09002 * 109.46848 * 59.99850 * 9 8 6 36 36 H 1.09001 * 109.46885 * 300.00464 * 9 8 6 37 37 H 1.08005 * 119.96050 * 359.97425 * 11 10 9 38 38 H 1.07999 * 120.03730 * 180.26989 * 12 11 10 39 39 H 0.96996 * 120.00604 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.03853 * 179.97438 * 23 13 12 41 41 H 1.07997 * 119.96732 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1815 5 8 1.6620 2.0814 1.2211 6 6 3.5419 1.4444 -0.1238 7 8 4.1087 0.5065 -0.6435 8 7 4.2552 2.4882 0.3429 9 6 5.7153 2.4903 0.2221 10 6 6.2669 3.7602 0.8171 11 6 6.4356 4.8787 0.0213 12 6 6.9355 6.0456 0.5648 13 6 7.2799 6.0917 1.9094 14 8 7.7775 7.2355 2.4451 15 6 7.9838 7.2482 3.7775 16 1 7.8324 6.3488 4.3559 17 6 8.3903 8.4159 4.4050 18 7 8.5912 8.4284 5.7051 19 14 8.6528 9.9713 3.4045 20 1 7.3839 10.7402 3.3426 21 1 9.7037 10.8012 4.0463 22 1 9.0795 9.6089 2.0290 23 6 7.1145 4.9653 2.7047 24 6 6.6089 3.8030 2.1565 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7182 1.7119 -2.1130 31 1 0.3436 2.1979 -1.0920 32 1 1.7929 3.2270 -1.1813 33 1 2.0141 1.6542 2.0139 34 1 3.8020 3.2382 0.7589 35 1 5.9928 2.4312 -0.8303 36 1 6.1251 1.6320 0.7546 37 1 6.1723 4.8405 -1.0255 38 1 7.0629 6.9200 -0.0562 39 1 8.8759 9.2451 6.1441 40 1 7.3818 4.9980 3.7506 41 1 6.4805 2.9266 2.7743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931748735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:32 Heat of formation + Delta-G solvation = -121.704632 kcal Electronic energy + Delta-G solvation = -22863.233710 eV Core-core repulsion = 19321.655667 eV Total energy + Delta-G solvation = -3541.578043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42809 -40.87371 -38.80769 -38.12773 -35.79946 -34.46254 -34.09678 -31.92667 -31.67801 -30.29700 -27.87536 -26.67775 -25.66852 -23.74204 -22.75901 -22.03320 -20.97401 -19.87134 -19.32897 -19.02296 -17.35035 -16.89910 -16.72917 -16.45977 -16.29067 -15.86883 -15.67713 -15.48096 -15.43849 -14.82930 -14.55746 -14.32878 -14.12059 -14.07417 -13.67081 -13.39649 -13.30552 -13.14394 -12.98403 -12.78298 -12.58859 -12.49613 -12.48419 -12.35018 -11.95143 -11.84658 -11.44568 -11.32007 -10.94030 -10.52627 -10.12739 -9.85606 -9.10789 -8.51764 -6.24895 0.46632 0.52647 1.32056 1.35261 1.48074 1.51779 2.16359 2.26925 2.77065 3.02941 3.12623 3.16135 3.61628 3.76836 3.84661 3.92846 3.98764 4.11740 4.39238 4.43133 4.51861 4.53615 4.67288 4.68661 4.77827 4.83699 4.90591 4.93146 5.02991 5.11365 5.19886 5.28455 5.31638 5.37760 5.44992 5.51978 5.68175 5.76958 5.86626 6.17107 6.38292 6.67718 6.82368 7.14910 7.55043 8.59531 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.002814 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.485156 B = 9949.564167 C =10133.441114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.126 3.874 4 C -0.141 4.141 5 O -0.552 6.552 6 C 0.486 3.514 7 O -0.576 6.576 8 N -0.707 5.707 9 C 0.179 3.821 10 C -0.175 4.175 11 C -0.046 4.046 12 C -0.192 4.192 13 C 0.129 3.871 14 O -0.241 6.241 15 C -0.400 4.400 16 H 0.083 0.917 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.269 1.269 22 H -0.262 1.262 23 C -0.238 4.238 24 C -0.050 4.050 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.392 0.608 34 H 0.413 0.587 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.285 0.715 40 H 0.110 0.890 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.695 -13.202 -13.004 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.082 3.918 4 C -0.198 4.198 5 O -0.359 6.359 6 C 0.272 3.728 7 O -0.456 6.456 8 N -0.358 5.358 9 C 0.057 3.943 10 C -0.176 4.176 11 C -0.065 4.065 12 C -0.211 4.211 13 C 0.079 3.921 14 O -0.149 6.149 15 C -0.476 4.476 16 H 0.101 0.899 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.257 4.257 24 C -0.068 4.068 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.242 0.758 34 H 0.250 0.750 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.171 0.829 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.458 -13.135 -13.686 23.851 hybrid contribution 0.764 0.598 1.131 1.490 sum -13.694 -12.537 -12.554 22.413 Atomic orbital electron populations 1.21767 0.93272 1.02392 1.02888 1.21978 0.97954 0.93845 1.03470 1.21418 0.87309 0.95053 0.87999 1.21851 1.03029 1.00271 0.94674 1.86575 1.76689 1.57222 1.15455 1.21940 0.91523 0.81655 0.77700 1.90689 1.73072 1.36346 1.45449 1.46225 1.07236 1.22154 1.60205 1.19962 0.79470 0.94187 1.00715 1.19542 1.08147 0.96099 0.93839 1.20945 0.95063 0.90330 1.00120 1.20516 1.07835 1.00785 0.91950 1.19741 0.92345 0.86106 0.93866 1.83524 1.73820 1.33626 1.23883 1.20714 1.47472 0.99635 0.79822 0.89932 1.25285 0.95610 1.01588 0.96290 1.69725 1.46328 1.30695 1.09455 0.85223 0.78857 0.77686 0.79012 1.18994 1.19349 1.18617 1.21269 1.09276 0.94473 1.00673 1.20915 0.94791 0.96289 0.94809 0.91783 0.92007 0.91562 0.90864 0.91519 0.90283 0.88941 0.91499 0.75783 0.75030 0.90531 0.91201 0.82944 0.85077 0.90515 0.87207 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.32 71.98 0.67 -1.03 16 2 C -0.13 -2.04 4.84 30.59 0.15 -1.90 16 3 C 0.13 2.07 1.01 -11.54 -0.01 2.06 16 4 C -0.14 -2.02 8.34 71.98 0.60 -1.42 16 5 O -0.55 -8.38 11.83 -148.98 -1.76 -10.15 16 6 C 0.49 10.60 6.69 87.66 0.59 11.19 16 7 O -0.58 -16.56 15.99 -3.04 -0.05 -16.60 16 8 N -0.71 -14.56 5.46 -466.79 -2.55 -17.11 16 9 C 0.18 4.09 5.80 85.63 0.50 4.59 16 10 C -0.18 -4.74 5.25 -19.83 -0.10 -4.85 16 11 C -0.05 -1.28 9.69 22.25 0.22 -1.06 16 12 C -0.19 -6.77 9.99 22.39 0.22 -6.54 16 13 C 0.13 5.71 6.65 22.58 0.15 5.86 16 14 O -0.24 -12.66 8.59 -22.74 -0.20 -12.85 16 15 C -0.40 -22.96 9.95 67.92 0.68 -22.28 16 16 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16 17 C 0.01 0.63 5.49 84.83 0.47 1.09 16 18 N -0.92 -54.15 13.96 21.61 0.30 -53.85 16 19 Si 0.97 44.39 28.62 68.60 1.96 46.35 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 23 C -0.24 -9.81 9.17 22.39 0.21 -9.60 16 24 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.06 0.74 7.82 -2.39 -0.02 0.72 16 27 H 0.07 0.69 6.34 -2.39 -0.02 0.67 16 28 H 0.07 1.29 7.68 -2.39 -0.02 1.28 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.09 6.35 -2.39 -0.02 1.08 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 33 H 0.39 4.04 9.04 -74.06 -0.67 3.38 16 34 H 0.41 7.97 7.90 -92.71 -0.73 7.24 16 35 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.29 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.11 5.05 5.64 -2.91 -0.02 5.04 16 41 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -67.53 345.06 1.91 -65.61 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.34 Total: 23.85 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 4.54 Total: -25.25 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -2.25 Total: -70.96 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -2.01 Total: -39.60 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.96 Total: 46.35 kcal Total: -67.53 1.91 -65.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931748735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.091 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds