Wall clock time and date at job start Tue Mar 31 2020 07:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47162 * 2 1 4 4 C 1.52999 * 109.47032 * 120.00110 * 2 1 3 5 5 C 1.53001 * 109.47503 * 64.99644 * 4 2 1 6 6 N 1.46493 * 109.47643 * 180.02562 * 5 4 2 7 7 C 1.46498 * 120.00032 * 270.00542 * 6 5 4 8 8 C 1.50699 * 109.47290 * 94.33571 * 7 6 5 9 9 H 1.07992 * 119.99942 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99544 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00444 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99744 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47094 * 89.99955 * 12 10 8 14 14 H 1.48504 * 109.47224 * 210.00361 * 12 10 8 15 15 H 1.48502 * 109.46904 * 329.99849 * 12 10 8 16 16 C 1.34782 * 119.99870 * 89.99518 * 6 5 4 17 17 O 1.21592 * 120.00191 * 355.70570 * 16 6 5 18 18 C 1.47523 * 119.99645 * 175.69552 * 16 6 5 19 19 C 1.37972 * 126.74466 * 199.28635 * 18 16 6 20 20 O 1.33455 * 108.41363 * 179.83237 * 19 18 16 21 21 C 1.34968 * 109.87213 * 0.44621 * 20 19 18 22 22 C 1.41483 * 125.69554 * 179.72076 * 21 20 19 23 23 O 1.21427 * 119.99835 * 0.02562 * 22 21 20 24 24 C 1.36561 * 108.60932 * 359.72591 * 21 20 19 25 25 H 1.09005 * 109.46932 * 59.99641 * 1 2 3 26 26 H 1.08997 * 109.47495 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47396 * 300.00215 * 1 2 3 28 28 H 1.09001 * 109.46875 * 239.99799 * 2 1 3 29 29 H 1.09008 * 109.47012 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47178 * 299.99610 * 3 2 1 31 31 H 1.09001 * 109.47389 * 60.00114 * 3 2 1 32 32 H 1.09001 * 109.46771 * 304.99795 * 4 2 1 33 33 H 1.09001 * 109.47007 * 185.00015 * 4 2 1 34 34 H 1.09000 * 109.46750 * 59.99534 * 5 4 2 35 35 H 1.09000 * 109.46865 * 300.00520 * 5 4 2 36 36 H 1.09000 * 109.47052 * 214.33724 * 7 6 5 37 37 H 1.09007 * 109.47171 * 334.33480 * 7 6 5 38 38 H 0.97001 * 119.99453 * 179.97438 * 11 10 8 39 39 H 1.08000 * 125.79265 * 359.97377 * 19 18 16 40 40 H 1.07994 * 120.00492 * 180.02562 * 22 21 20 41 41 H 1.08000 * 126.70266 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1229 -2.8860 2.3844 7 6 3.4511 -3.5040 2.3832 8 6 4.4560 -2.5365 2.9534 9 1 4.1372 -1.5588 3.2833 10 6 5.7823 -2.8995 3.0538 11 7 6.1706 -4.0899 2.6516 12 14 7.0281 -1.6999 3.7600 13 1 7.1216 -1.8914 5.2296 14 1 8.3565 -1.9454 3.1432 15 1 6.5964 -0.3092 3.4685 16 6 1.3497 -2.9525 3.4864 17 8 0.2809 -2.3735 3.5151 18 6 1.8001 -3.7280 4.6577 19 6 1.0123 -4.2020 5.6864 20 8 1.7933 -4.8559 6.5487 21 6 3.0745 -4.8198 6.1257 22 6 4.1797 -5.4027 6.7893 23 8 4.0150 -5.9992 7.8341 24 6 3.1259 -4.1266 4.9502 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2617 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 2.0697 -2.6550 0.3003 35 1 0.5488 -2.2723 1.1421 36 1 3.4317 -4.4083 2.9915 37 1 3.7321 -3.7595 1.3614 38 1 7.1038 -4.3450 2.7220 39 1 -0.0556 -4.0687 5.7772 40 1 5.1699 -5.3172 6.3668 41 1 4.0066 -3.9221 4.3594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931943123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:17 Heat of formation + Delta-G solvation = -60.003919 kcal Electronic energy + Delta-G solvation = -24122.634357 eV Core-core repulsion = 20583.731858 eV Total energy + Delta-G solvation = -3538.902499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.38182 -39.13654 -38.33245 -36.49003 -35.11502 -33.03978 -32.62392 -30.21593 -29.11975 -27.32539 -26.97340 -24.31023 -23.97658 -23.15227 -21.75344 -20.58388 -19.67889 -18.34273 -17.07982 -16.73127 -16.32016 -15.94267 -15.62356 -15.37905 -14.95466 -14.77701 -14.29907 -14.24129 -13.62638 -13.49451 -13.25424 -13.05796 -12.88046 -12.56195 -12.23230 -12.05660 -12.02125 -11.63847 -11.29214 -11.10552 -10.96939 -10.71501 -10.56587 -10.52779 -10.27629 -9.98995 -9.85538 -9.80337 -9.48096 -9.27208 -8.76150 -8.38698 -7.82141 -6.41198 -4.49711 1.06906 2.04019 3.08697 3.09934 3.19385 3.22436 3.27242 3.78853 3.87332 4.16100 4.78113 4.88875 5.08820 5.17417 5.19601 5.23680 5.30557 5.46770 5.62658 5.76725 5.86335 5.89013 5.95138 5.99343 6.04969 6.13422 6.15287 6.24665 6.27207 6.34863 6.44978 6.60494 6.70328 6.84714 6.89715 7.00882 7.09049 7.41751 7.56014 7.75109 7.82460 8.16742 8.59828 8.87223 9.16883 10.62436 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.006204 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.226667 B = 4511.775452 C = 6234.652056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.125 3.875 6 N -0.587 5.587 7 C 0.219 3.781 8 C -0.538 4.538 9 H 0.067 0.933 10 C 0.065 3.935 11 N -0.884 5.884 12 Si 0.891 3.109 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.271 1.271 16 C 0.587 3.413 17 O -0.573 6.573 18 C -0.239 4.239 19 C 0.061 3.939 20 O -0.150 6.150 21 C -0.167 4.167 22 C 0.417 3.583 23 O -0.477 6.477 24 C -0.071 4.071 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.040 0.960 38 H 0.270 0.730 39 H 0.217 0.783 40 H 0.135 0.865 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 2.682 -2.552 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C 0.002 3.998 6 N -0.316 5.316 7 C 0.099 3.901 8 C -0.577 4.577 9 H 0.085 0.915 10 C -0.139 4.139 11 N -0.521 5.521 12 Si 0.718 3.282 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.196 1.196 16 C 0.377 3.623 17 O -0.455 6.455 18 C -0.244 4.244 19 C -0.014 4.014 20 O -0.044 6.044 21 C -0.215 4.215 22 C 0.279 3.721 23 O -0.353 6.353 24 C -0.090 4.090 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.234 0.766 40 H 0.151 0.849 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.798 2.364 -1.767 6.505 hybrid contribution 0.843 0.851 0.013 1.198 sum -4.955 3.215 -1.753 6.161 Atomic orbital electron populations 1.21880 0.95619 1.01787 1.01097 1.21065 0.95532 0.96063 0.98651 1.21813 1.01096 0.96182 1.01107 1.22000 1.02364 0.95105 0.97171 1.21384 0.99199 0.92191 0.87072 1.48007 1.18422 1.53436 1.11746 1.20001 0.76995 0.93892 0.99223 1.21547 0.92336 1.01704 1.42098 0.91464 1.24994 0.98208 0.95502 0.95190 1.69932 1.17785 1.18954 1.45426 0.86571 0.80528 0.81639 0.79474 1.20055 1.20817 1.19557 1.17187 0.83354 0.79825 0.81969 1.90687 1.23984 1.48075 1.82786 1.20756 0.94639 1.09313 0.99669 1.25065 0.96916 0.92109 0.87271 1.84009 1.17681 1.58239 1.44422 1.22166 0.84519 1.13865 1.00977 1.22107 0.91418 0.74783 0.83785 1.90557 1.88619 1.33839 1.22274 1.24531 1.00810 0.90181 0.93476 0.93434 0.92494 0.92766 0.91426 0.92633 0.93249 0.92931 0.92010 0.90399 0.91153 0.91005 0.93261 0.94210 0.91988 0.76649 0.84902 0.75746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.48 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.14 -1.77 9.19 37.15 0.34 -1.43 16 4 C -0.13 -2.10 5.01 -26.73 -0.13 -2.24 16 5 C 0.12 2.14 5.17 -4.04 -0.02 2.12 16 6 N -0.59 -11.62 2.47 -176.30 -0.43 -12.05 16 7 C 0.22 4.66 4.74 -5.20 -0.02 4.64 16 8 C -0.54 -12.24 6.96 -34.44 -0.24 -12.48 16 9 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.07 1.51 4.86 -17.82 -0.09 1.42 16 11 N -0.88 -21.10 13.29 55.43 0.74 -20.36 16 12 Si 0.89 18.50 29.54 -169.99 -5.02 13.48 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 16 C 0.59 11.99 7.62 -12.47 -0.09 11.90 16 17 O -0.57 -12.41 16.59 5.28 0.09 -12.32 16 18 C -0.24 -4.56 5.86 -104.97 -0.61 -5.17 16 19 C 0.06 0.99 11.99 30.63 0.37 1.36 16 20 O -0.15 -2.65 10.57 -4.79 -0.05 -2.70 16 21 C -0.17 -3.02 6.89 -38.95 -0.27 -3.28 16 22 C 0.42 6.94 11.38 31.97 0.36 7.30 16 23 O -0.48 -9.15 17.88 -5.41 -0.10 -9.24 16 24 C -0.07 -1.37 8.16 -38.95 -0.32 -1.69 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 34 H 0.07 1.12 7.86 -51.93 -0.41 0.72 16 35 H 0.07 1.21 5.90 -51.93 -0.31 0.91 16 36 H 0.05 1.08 4.84 -51.93 -0.25 0.83 16 37 H 0.04 0.89 7.84 -51.93 -0.41 0.49 16 38 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 39 H 0.22 2.72 8.06 -52.49 -0.42 2.29 16 40 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.23 4.71 3.24 -52.49 -0.17 4.54 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -27.08 344.74 -5.89 -32.97 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.64 Total: 5.59 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.66 Total: -0.56 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.30 Total: -32.42 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.08 -5.89 -32.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931943123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.033 kcal (2) G-P(sol) polarization free energy of solvation -27.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds