Wall clock time and date at job start Tue Mar 31 2020 07:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47162 * 2 1 4 4 C 1.52999 * 109.47032 * 120.00110 * 2 1 3 5 5 C 1.53001 * 109.47503 * 64.99644 * 4 2 1 6 6 N 1.46493 * 109.47643 * 180.02562 * 5 4 2 7 7 C 1.46498 * 120.00032 * 270.00542 * 6 5 4 8 8 C 1.50699 * 109.47290 * 94.33571 * 7 6 5 9 9 H 1.07992 * 119.99942 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99544 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00444 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99744 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47094 * 89.99955 * 12 10 8 14 14 H 1.48504 * 109.47224 * 210.00361 * 12 10 8 15 15 H 1.48502 * 109.46904 * 329.99849 * 12 10 8 16 16 C 1.34782 * 119.99870 * 89.99518 * 6 5 4 17 17 O 1.21592 * 120.00191 * 355.70570 * 16 6 5 18 18 C 1.47523 * 119.99645 * 175.69552 * 16 6 5 19 19 C 1.37972 * 126.74466 * 199.28635 * 18 16 6 20 20 O 1.33455 * 108.41363 * 179.83237 * 19 18 16 21 21 C 1.34968 * 109.87213 * 0.44621 * 20 19 18 22 22 C 1.41483 * 125.69554 * 179.72076 * 21 20 19 23 23 O 1.21427 * 119.99835 * 0.02562 * 22 21 20 24 24 C 1.36561 * 108.60932 * 359.72591 * 21 20 19 25 25 H 1.09005 * 109.46932 * 59.99641 * 1 2 3 26 26 H 1.08997 * 109.47495 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47396 * 300.00215 * 1 2 3 28 28 H 1.09001 * 109.46875 * 239.99799 * 2 1 3 29 29 H 1.09008 * 109.47012 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47178 * 299.99610 * 3 2 1 31 31 H 1.09001 * 109.47389 * 60.00114 * 3 2 1 32 32 H 1.09001 * 109.46771 * 304.99795 * 4 2 1 33 33 H 1.09001 * 109.47007 * 185.00015 * 4 2 1 34 34 H 1.09000 * 109.46750 * 59.99534 * 5 4 2 35 35 H 1.09000 * 109.46865 * 300.00520 * 5 4 2 36 36 H 1.09000 * 109.47052 * 214.33724 * 7 6 5 37 37 H 1.09007 * 109.47171 * 334.33480 * 7 6 5 38 38 H 0.97001 * 119.99453 * 179.97438 * 11 10 8 39 39 H 1.08000 * 125.79265 * 359.97377 * 19 18 16 40 40 H 1.07994 * 120.00492 * 180.02562 * 22 21 20 41 41 H 1.08000 * 126.70266 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1229 -2.8860 2.3844 7 6 3.4511 -3.5040 2.3832 8 6 4.4560 -2.5365 2.9534 9 1 4.1372 -1.5588 3.2833 10 6 5.7823 -2.8995 3.0538 11 7 6.1706 -4.0899 2.6516 12 14 7.0281 -1.6999 3.7600 13 1 7.1216 -1.8914 5.2296 14 1 8.3565 -1.9454 3.1432 15 1 6.5964 -0.3092 3.4685 16 6 1.3497 -2.9525 3.4864 17 8 0.2809 -2.3735 3.5151 18 6 1.8001 -3.7280 4.6577 19 6 1.0123 -4.2020 5.6864 20 8 1.7933 -4.8559 6.5487 21 6 3.0745 -4.8198 6.1257 22 6 4.1797 -5.4027 6.7893 23 8 4.0150 -5.9992 7.8341 24 6 3.1259 -4.1266 4.9502 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2617 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 2.0697 -2.6550 0.3003 35 1 0.5488 -2.2723 1.1421 36 1 3.4317 -4.4083 2.9915 37 1 3.7321 -3.7595 1.3614 38 1 7.1038 -4.3450 2.7220 39 1 -0.0556 -4.0687 5.7772 40 1 5.1699 -5.3172 6.3668 41 1 4.0066 -3.9221 4.3594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931943123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:16 Heat of formation + Delta-G solvation = -73.302158 kcal Electronic energy + Delta-G solvation = -24123.211011 eV Core-core repulsion = 20583.731858 eV Total energy + Delta-G solvation = -3539.479154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.80573 -40.69471 -39.74682 -37.79519 -36.66811 -34.60046 -34.22026 -31.62679 -30.54361 -28.98527 -27.97801 -25.68414 -25.45018 -24.79743 -23.20548 -22.00181 -20.84870 -19.80718 -18.68374 -18.39288 -17.81915 -17.38012 -17.04278 -16.83187 -16.41327 -16.19737 -15.80698 -15.66861 -14.95329 -14.82856 -14.59200 -14.50532 -14.37598 -14.18156 -13.59330 -13.49512 -13.13734 -13.01167 -12.76992 -12.68820 -12.27862 -12.25796 -12.02925 -11.85775 -11.56873 -11.47313 -11.34112 -11.23073 -11.00115 -10.87136 -10.51566 -9.82238 -9.41121 -8.19943 -6.32935 -0.30330 0.57327 1.43341 1.49929 1.55553 1.75450 1.86637 2.26451 2.31381 2.46287 3.08540 3.43964 3.72834 3.90239 3.97931 4.03016 4.12781 4.17662 4.30065 4.46933 4.61577 4.69201 4.75416 4.79895 4.82864 4.85117 4.92130 4.98459 5.05199 5.15674 5.21204 5.24394 5.37276 5.38221 5.52311 5.54172 5.65572 5.71227 5.86836 6.04968 6.40125 6.51779 6.81293 7.24971 7.38151 8.83362 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.006204 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.226667 B = 4511.775452 C = 6234.652056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.117 4.117 5 C 0.120 3.880 6 N -0.591 5.591 7 C 0.232 3.768 8 C -0.537 4.537 9 H 0.051 0.949 10 C 0.039 3.961 11 N -0.904 5.904 12 Si 0.936 3.064 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.279 1.279 16 C 0.584 3.416 17 O -0.590 6.590 18 C -0.272 4.272 19 C 0.091 3.909 20 O -0.153 6.153 21 C -0.172 4.172 22 C 0.425 3.575 23 O -0.502 6.502 24 C -0.078 4.078 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.026 0.974 38 H 0.273 0.727 39 H 0.255 0.745 40 H 0.167 0.833 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 3.022 -2.729 7.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.155 4.155 5 C -0.002 4.002 6 N -0.319 5.319 7 C 0.112 3.888 8 C -0.576 4.576 9 H 0.070 0.930 10 C -0.163 4.163 11 N -0.542 5.542 12 Si 0.762 3.238 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.204 1.204 16 C 0.374 3.626 17 O -0.474 6.474 18 C -0.276 4.276 19 C 0.017 3.983 20 O -0.046 6.046 21 C -0.220 4.220 22 C 0.289 3.711 23 O -0.380 6.380 24 C -0.096 4.096 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.271 0.729 40 H 0.183 0.817 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.224 2.705 -1.953 7.062 hybrid contribution 0.926 0.749 0.051 1.193 sum -5.298 3.454 -1.901 6.604 Atomic orbital electron populations 1.21841 0.94629 1.01779 1.01730 1.21058 0.96300 0.96442 0.97146 1.21799 1.00722 0.95532 1.01969 1.21866 1.00692 0.94923 0.98063 1.21565 0.99516 0.92489 0.86622 1.48063 1.17869 1.53447 1.12523 1.19737 0.77481 0.93591 0.98006 1.21496 0.92875 1.01103 1.42093 0.93048 1.25404 0.99178 0.96399 0.95357 1.69981 1.18164 1.19840 1.46166 0.85877 0.78881 0.79693 0.79335 1.19246 1.20747 1.20444 1.17397 0.83156 0.79718 0.82351 1.90663 1.24613 1.48931 1.83195 1.20814 0.95253 1.11033 1.00497 1.25717 0.97960 0.89284 0.85350 1.84045 1.17743 1.58231 1.44605 1.22374 0.85014 1.13838 1.00732 1.22591 0.92075 0.73445 0.82993 1.90553 1.88949 1.35050 1.23436 1.24269 1.00494 0.90963 0.93917 0.91144 0.92836 0.93762 0.90332 0.93247 0.91016 0.93436 0.94222 0.92646 0.89979 0.90499 0.93636 0.95597 0.91765 0.72905 0.81696 0.77308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.95 71.98 0.64 -2.66 16 2 C -0.09 -2.30 2.92 -10.80 -0.03 -2.33 16 3 C -0.14 -3.31 9.19 71.98 0.66 -2.65 16 4 C -0.12 -3.88 5.01 30.59 0.15 -3.73 16 5 C 0.12 4.13 5.17 86.38 0.45 4.58 16 6 N -0.59 -23.56 2.47 -829.94 -2.05 -25.61 16 7 C 0.23 10.03 4.74 85.63 0.41 10.44 16 8 C -0.54 -24.69 6.96 25.60 0.18 -24.51 16 9 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 10 C 0.04 1.80 4.86 84.65 0.41 2.21 16 11 N -0.90 -42.90 13.29 21.45 0.28 -42.62 16 12 Si 0.94 37.58 29.54 68.60 2.03 39.61 16 13 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 14 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 16 C 0.58 23.75 7.62 86.69 0.66 24.41 16 17 O -0.59 -25.30 16.59 -4.01 -0.07 -25.37 16 18 C -0.27 -10.16 5.86 -20.09 -0.12 -10.28 16 19 C 0.09 2.79 11.99 67.76 0.81 3.61 16 20 O -0.15 -5.14 10.57 9.11 0.10 -5.04 16 21 C -0.17 -6.00 6.89 22.68 0.16 -5.84 16 22 C 0.43 13.58 11.38 68.62 0.78 14.36 16 23 O -0.50 -18.67 17.88 6.88 0.12 -18.55 16 24 C -0.08 -2.95 8.16 22.68 0.19 -2.76 16 25 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.05 1.27 6.56 -2.39 -0.02 1.25 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 2.07 7.90 -2.39 -0.02 2.05 16 34 H 0.08 2.59 7.86 -2.39 -0.02 2.58 16 35 H 0.08 2.57 5.90 -2.39 -0.01 2.56 16 36 H 0.05 2.03 4.84 -2.39 -0.01 2.02 16 37 H 0.03 1.18 7.84 -2.38 -0.02 1.16 16 38 H 0.27 12.35 8.31 -92.71 -0.77 11.58 16 39 H 0.26 5.57 8.06 -2.91 -0.02 5.55 16 40 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 41 H 0.21 8.77 3.24 -2.91 -0.01 8.77 16 Total: -1.00 -57.15 344.74 6.80 -50.34 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 1.04 Total: 22.41 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.35 Total: 4.83 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -1.76 Total: -68.23 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: 0.15 Total: -48.96 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -57.15 6.80 -50.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931943123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.958 kcal (2) G-P(sol) polarization free energy of solvation -57.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds