Wall clock time and date at job start Tue Mar 31 2020 07:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 C 1.53007 * 109.47313 * 184.96933 * 3 2 1 5 5 H 1.08999 * 109.46712 * 304.93828 * 4 3 2 6 6 O 1.42900 * 109.46784 * 64.93347 * 4 3 2 7 7 C 1.42891 * 113.99760 * 205.20025 * 6 4 3 8 8 C 1.50698 * 109.47157 * 184.93514 * 4 3 2 9 9 O 1.21289 * 120.00274 * 245.00384 * 8 4 3 10 10 N 1.34780 * 119.99950 * 65.00013 * 8 4 3 11 11 C 1.39986 * 120.00121 * 185.00729 * 10 8 4 12 12 C 1.38916 * 120.00447 * 206.49024 * 11 10 8 13 13 C 1.38003 * 119.99728 * 179.79446 * 12 11 10 14 14 C 1.38901 * 120.00239 * 0.45831 * 13 12 11 15 15 O 1.35783 * 119.99965 * 179.76720 * 14 13 12 16 16 C 1.34813 * 117.00405 * 185.76506 * 15 14 13 17 17 H 1.08003 * 119.99575 * 5.40762 * 16 15 14 18 18 C 1.38625 * 120.00192 * 185.41477 * 16 15 14 19 19 N 1.31576 * 119.99890 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00067 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46848 * 89.99838 * 20 18 16 22 22 H 1.48500 * 109.47054 * 209.99972 * 20 18 16 23 23 H 1.48505 * 109.46676 * 329.99953 * 20 18 16 24 24 C 1.38905 * 120.00527 * 359.79471 * 14 13 12 25 25 C 1.37999 * 120.00194 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.47335 * 299.99657 * 1 2 3 27 27 H 1.09002 * 109.47398 * 60.00061 * 1 2 3 28 28 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47335 * 240.00343 * 2 1 3 30 30 H 1.09002 * 109.47398 * 119.99939 * 2 1 3 31 31 H 1.09001 * 109.47089 * 64.97326 * 3 2 1 32 32 H 1.09000 * 109.47541 * 304.97473 * 3 2 1 33 33 H 1.09010 * 109.47277 * 184.99475 * 7 6 4 34 34 H 1.08996 * 109.47738 * 304.99460 * 7 6 4 35 35 H 1.09003 * 109.47317 * 65.00218 * 7 6 4 36 36 H 0.96999 * 119.99486 * 5.00988 * 10 8 4 37 37 H 1.08001 * 120.00362 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.99839 * 180.22929 * 13 12 11 39 39 H 0.97002 * 119.99356 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.00125 * 179.97438 * 24 14 13 41 41 H 1.07997 * 120.00341 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4444 -0.1250 5 1 3.9951 0.8322 0.6677 6 8 3.9393 0.9096 -1.3962 7 6 5.2494 0.3398 -1.4240 8 6 4.0772 2.8564 -0.0033 9 8 4.6218 3.3874 -0.9480 10 7 3.9300 3.5292 1.1552 11 6 4.3103 4.8739 1.2369 12 6 4.6880 5.4161 2.4588 13 6 5.0669 6.7407 2.5384 14 6 5.0615 7.5343 1.3984 15 8 5.4298 8.8388 1.4777 16 6 5.2888 9.5835 0.3627 17 1 4.8174 9.1613 -0.5125 18 6 5.7489 10.8909 0.3396 19 7 6.3229 11.4053 1.4060 20 14 5.5542 11.9225 -1.2056 21 1 4.2563 12.6425 -1.1597 22 1 6.6635 12.9064 -1.2869 23 1 5.5881 11.0385 -2.3983 24 6 4.6788 6.9937 0.1775 25 6 4.3044 5.6679 0.0968 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7512 1.9300 0.9312 32 1 1.6057 1.9815 -0.8420 33 1 5.4923 0.0367 -2.4425 34 1 5.9743 1.0786 -1.0822 35 1 5.2810 -0.5306 -0.7686 36 1 3.5607 3.0815 1.9324 37 1 4.6887 4.8000 3.3459 38 1 5.3641 7.1612 3.4877 39 1 6.6452 12.3201 1.3897 40 1 4.6742 7.6110 -0.7088 41 1 4.0065 5.2477 -0.8524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117778501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:01 Heat of formation + Delta-G solvation = -88.384617 kcal Electronic energy + Delta-G solvation = -22951.270680 eV Core-core repulsion = 19411.137502 eV Total energy + Delta-G solvation = -3540.133178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47956 -38.91767 -37.77230 -36.29632 -35.14709 -33.90334 -32.18612 -30.42336 -30.17798 -27.87948 -26.53637 -25.41605 -24.59594 -22.41925 -21.59849 -21.35013 -20.02088 -18.24173 -17.70710 -17.31307 -16.77065 -16.26968 -15.66397 -15.06236 -14.88967 -14.68003 -14.47990 -13.98640 -13.76130 -13.63168 -13.52911 -13.44776 -12.88757 -12.66441 -12.55867 -12.29283 -11.79946 -11.70565 -11.59582 -11.58413 -11.39211 -11.23165 -10.99987 -10.91037 -10.80312 -10.53175 -10.42166 -9.66995 -9.44723 -9.06756 -8.67613 -8.20349 -6.89483 -6.43520 -4.00844 2.02716 2.20339 2.82564 3.09872 3.15815 3.16649 3.21408 3.57817 3.99212 4.42010 4.54889 4.57169 4.70221 4.79362 4.92344 5.12134 5.12171 5.20904 5.25002 5.29898 5.34898 5.50408 5.54887 5.58533 5.66491 5.75587 5.80506 5.90657 6.02932 6.13366 6.15740 6.32524 6.71202 6.75909 6.87824 7.00446 7.10293 7.30416 7.44945 7.69141 7.78210 8.01711 8.32643 9.02485 9.71951 10.74515 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.002975 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.490043 B = 9409.999552 C = 9623.337666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.077 3.923 5 H 0.084 0.916 6 O -0.356 6.356 7 C 0.029 3.971 8 C 0.477 3.523 9 O -0.510 6.510 10 N -0.657 5.657 11 C 0.036 3.964 12 C -0.097 4.097 13 C -0.176 4.176 14 C 0.144 3.856 15 O -0.177 6.177 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.217 4.217 25 C -0.072 4.072 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.401 0.599 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.270 0.730 40 H 0.130 0.870 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 -22.033 -0.149 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.150 4.150 4 C 0.015 3.985 5 H 0.102 0.898 6 O -0.273 6.273 7 C -0.067 4.067 8 C 0.263 3.737 9 O -0.384 6.384 10 N -0.303 5.303 11 C -0.056 4.056 12 C -0.118 4.118 13 C -0.196 4.196 14 C 0.090 3.910 15 O -0.080 6.080 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.237 4.237 25 C -0.092 4.092 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.235 0.765 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.341 -21.319 -0.792 22.562 hybrid contribution 0.063 0.298 -0.164 0.346 sum -7.278 -21.021 -0.956 22.266 Atomic orbital electron populations 1.21771 0.95534 1.01682 1.02049 1.21487 0.96054 0.95762 1.02564 1.21687 0.90986 0.98714 1.03613 1.22067 0.97029 0.91151 0.88208 0.89833 1.87980 1.32660 1.76556 1.30069 1.22846 0.84319 0.96678 1.02906 1.21458 0.80068 0.88973 0.83177 1.90710 1.40927 1.68848 1.37954 1.43297 1.62954 1.10539 1.13470 1.17310 1.10145 0.82930 0.95215 1.20295 1.00972 0.95015 0.95490 1.19974 1.09214 0.93108 0.97331 1.19419 0.92937 0.85659 0.92998 1.83986 1.72378 1.14808 1.36875 1.21326 1.39871 0.93777 0.91625 0.89076 1.25282 0.95986 0.96420 0.98834 1.70048 1.36449 1.15310 1.28024 0.85718 0.78286 0.79374 0.80127 1.19865 1.20259 1.19129 1.21125 1.08718 0.95519 0.98337 1.20921 0.98120 0.92496 0.97637 0.92671 0.92528 0.92681 0.90969 0.92052 0.89973 0.90159 0.89284 0.93395 0.94105 0.76481 0.86758 0.86054 0.92043 0.85199 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.85 5.88 -26.73 -0.16 -1.00 16 3 C -0.11 -0.96 4.89 -26.73 -0.13 -1.09 16 4 C 0.08 0.80 2.51 -27.88 -0.07 0.73 16 5 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 6 O -0.36 -4.31 9.38 -55.09 -0.52 -4.82 16 7 C 0.03 0.28 10.70 101.05 1.08 1.36 16 8 C 0.48 6.88 6.72 -10.98 -0.07 6.81 16 9 O -0.51 -9.72 13.51 -14.31 -0.19 -9.92 16 10 N -0.66 -8.84 5.25 -9.82 -0.05 -8.90 16 11 C 0.04 0.65 6.40 -83.63 -0.54 0.11 16 12 C -0.10 -1.69 9.94 -39.42 -0.39 -2.08 16 13 C -0.18 -3.68 9.98 -39.42 -0.39 -4.07 16 14 C 0.14 3.53 6.65 -39.09 -0.26 3.27 16 15 O -0.18 -5.10 9.75 0.00 0.00 -5.10 16 16 C -0.39 -11.07 9.44 30.88 0.29 -10.78 16 17 H 0.09 2.42 5.29 -52.48 -0.28 2.14 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 20 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C -0.22 -5.00 9.13 -39.42 -0.36 -5.36 16 25 C -0.07 -1.48 8.69 -39.41 -0.34 -1.83 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.07 0.57 7.69 -51.93 -0.40 0.17 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.05 0.54 7.79 -51.93 -0.40 0.13 16 35 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.40 3.73 8.67 -40.82 -0.35 3.38 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 3.03 5.70 -52.49 -0.30 2.73 16 41 H 0.13 2.68 5.91 -52.49 -0.31 2.37 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -34.07 347.07 -6.67 -40.74 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.81 Total: 5.19 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.07 Total: -13.55 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.71 Total: -33.65 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.71 Total: -19.84 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.07 -6.67 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117778501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.641 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds