Wall clock time and date at job start Tue Mar 31 2020 07:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 C 1.53007 * 109.47313 * 184.96933 * 3 2 1 5 5 H 1.08999 * 109.46712 * 304.93828 * 4 3 2 6 6 O 1.42900 * 109.46784 * 64.93347 * 4 3 2 7 7 C 1.42891 * 113.99760 * 205.20025 * 6 4 3 8 8 C 1.50698 * 109.47157 * 184.93514 * 4 3 2 9 9 O 1.21289 * 120.00274 * 245.00384 * 8 4 3 10 10 N 1.34780 * 119.99950 * 65.00013 * 8 4 3 11 11 C 1.39986 * 120.00121 * 185.00729 * 10 8 4 12 12 C 1.38916 * 120.00447 * 206.49024 * 11 10 8 13 13 C 1.38003 * 119.99728 * 179.79446 * 12 11 10 14 14 C 1.38901 * 120.00239 * 0.45831 * 13 12 11 15 15 O 1.35783 * 119.99965 * 179.76720 * 14 13 12 16 16 C 1.34813 * 117.00405 * 185.76506 * 15 14 13 17 17 H 1.08003 * 119.99575 * 5.40762 * 16 15 14 18 18 C 1.38625 * 120.00192 * 185.41477 * 16 15 14 19 19 N 1.31576 * 119.99890 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00067 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46848 * 89.99838 * 20 18 16 22 22 H 1.48500 * 109.47054 * 209.99972 * 20 18 16 23 23 H 1.48505 * 109.46676 * 329.99953 * 20 18 16 24 24 C 1.38905 * 120.00527 * 359.79471 * 14 13 12 25 25 C 1.37999 * 120.00194 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.47335 * 299.99657 * 1 2 3 27 27 H 1.09002 * 109.47398 * 60.00061 * 1 2 3 28 28 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47335 * 240.00343 * 2 1 3 30 30 H 1.09002 * 109.47398 * 119.99939 * 2 1 3 31 31 H 1.09001 * 109.47089 * 64.97326 * 3 2 1 32 32 H 1.09000 * 109.47541 * 304.97473 * 3 2 1 33 33 H 1.09010 * 109.47277 * 184.99475 * 7 6 4 34 34 H 1.08996 * 109.47738 * 304.99460 * 7 6 4 35 35 H 1.09003 * 109.47317 * 65.00218 * 7 6 4 36 36 H 0.96999 * 119.99486 * 5.00988 * 10 8 4 37 37 H 1.08001 * 120.00362 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.99839 * 180.22929 * 13 12 11 39 39 H 0.97002 * 119.99356 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.00125 * 179.97438 * 24 14 13 41 41 H 1.07997 * 120.00341 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4444 -0.1250 5 1 3.9951 0.8322 0.6677 6 8 3.9393 0.9096 -1.3962 7 6 5.2494 0.3398 -1.4240 8 6 4.0772 2.8564 -0.0033 9 8 4.6218 3.3874 -0.9480 10 7 3.9300 3.5292 1.1552 11 6 4.3103 4.8739 1.2369 12 6 4.6880 5.4161 2.4588 13 6 5.0669 6.7407 2.5384 14 6 5.0615 7.5343 1.3984 15 8 5.4298 8.8388 1.4777 16 6 5.2888 9.5835 0.3627 17 1 4.8174 9.1613 -0.5125 18 6 5.7489 10.8909 0.3396 19 7 6.3229 11.4053 1.4060 20 14 5.5542 11.9225 -1.2056 21 1 4.2563 12.6425 -1.1597 22 1 6.6635 12.9064 -1.2869 23 1 5.5881 11.0385 -2.3983 24 6 4.6788 6.9937 0.1775 25 6 4.3044 5.6679 0.0968 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7512 1.9300 0.9312 32 1 1.6057 1.9815 -0.8420 33 1 5.4923 0.0367 -2.4425 34 1 5.9743 1.0786 -1.0822 35 1 5.2810 -0.5306 -0.7686 36 1 3.5607 3.0815 1.9324 37 1 4.6887 4.8000 3.3459 38 1 5.3641 7.1612 3.4877 39 1 6.6452 12.3201 1.3897 40 1 4.6742 7.6110 -0.7088 41 1 4.0065 5.2477 -0.8524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117778501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:00 Heat of formation + Delta-G solvation = -111.237740 kcal Electronic energy + Delta-G solvation = -22952.261666 eV Core-core repulsion = 19411.137502 eV Total energy + Delta-G solvation = -3541.124164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73956 -40.53791 -38.98518 -37.83440 -35.93282 -35.21425 -34.17969 -31.88690 -31.28044 -29.33386 -27.41396 -27.20551 -25.60750 -24.01828 -23.00324 -22.10216 -21.29135 -20.00407 -19.26615 -18.37339 -18.33911 -17.43804 -16.72879 -16.32098 -16.20529 -15.90393 -15.61933 -15.51586 -15.40142 -15.24134 -14.67902 -14.46287 -14.21839 -14.06033 -13.59758 -13.40034 -13.29381 -13.12788 -13.03084 -12.71935 -12.50712 -12.38985 -12.15056 -12.03803 -11.94083 -11.56888 -11.46264 -11.32872 -11.15941 -10.61225 -10.26222 -9.84998 -8.58310 -8.48765 -6.15062 0.47652 0.52438 1.33564 1.40247 1.50571 1.58000 1.98654 2.16825 2.75554 2.81236 3.14492 3.48580 3.54822 3.84568 3.91406 4.08919 4.10839 4.23638 4.30822 4.45010 4.46704 4.52677 4.62717 4.70091 4.72067 4.75923 4.83734 4.95505 5.03272 5.05443 5.10996 5.28469 5.33370 5.38512 5.39576 5.51824 5.56084 5.69339 5.98444 6.01026 6.15643 6.53004 6.96219 7.18082 7.75646 8.74219 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.002975 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.490043 B = 9409.999552 C = 9623.337666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.110 4.110 4 C 0.084 3.916 5 H 0.124 0.876 6 O -0.378 6.378 7 C 0.025 3.975 8 C 0.475 3.525 9 O -0.560 6.560 10 N -0.641 5.641 11 C 0.065 3.935 12 C -0.079 4.079 13 C -0.177 4.177 14 C 0.104 3.896 15 O -0.227 6.227 16 C -0.413 4.413 17 H 0.095 0.905 18 C -0.020 4.020 19 N -0.917 5.917 20 Si 1.015 2.985 21 H -0.261 1.261 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.228 4.228 25 C -0.087 4.087 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.428 0.572 37 H 0.172 0.828 38 H 0.131 0.869 39 H 0.274 0.726 40 H 0.113 0.887 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 -25.415 0.791 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.148 4.148 4 C 0.023 3.977 5 H 0.142 0.858 6 O -0.295 6.295 7 C -0.071 4.071 8 C 0.264 3.736 9 O -0.437 6.437 10 N -0.290 5.290 11 C -0.029 4.029 12 C -0.099 4.099 13 C -0.197 4.197 14 C 0.053 3.947 15 O -0.134 6.134 16 C -0.490 4.490 17 H 0.112 0.888 18 C -0.217 4.217 19 N -0.556 5.556 20 Si 0.835 3.165 21 H -0.185 1.185 22 H -0.192 1.192 23 H -0.183 1.183 24 C -0.247 4.247 25 C -0.107 4.107 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.267 0.733 37 H 0.189 0.811 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.131 0.869 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.552 -24.798 0.179 26.232 hybrid contribution 0.345 0.938 -0.410 1.080 sum -8.207 -23.860 -0.231 25.233 Atomic orbital electron populations 1.21779 0.95278 1.02210 1.01880 1.21450 0.96209 0.94527 1.03112 1.21746 0.89408 0.99898 1.03728 1.22260 0.98111 0.88444 0.88894 0.85828 1.87972 1.33593 1.76595 1.31379 1.22983 0.82900 0.97060 1.04170 1.22435 0.78564 0.90452 0.82182 1.90704 1.43043 1.70311 1.39691 1.43223 1.62477 1.08596 1.14694 1.17453 1.06563 0.84585 0.94290 1.20759 0.98192 0.93819 0.97137 1.20345 1.08490 0.94271 0.96550 1.19948 0.94705 0.85199 0.94835 1.83941 1.75243 1.16771 1.37407 1.21730 1.40600 0.94660 0.91969 0.88789 1.26511 0.95377 0.97352 1.02506 1.70174 1.38746 1.16022 1.30611 0.84638 0.78862 0.77442 0.75600 1.18548 1.19250 1.18295 1.21090 1.09526 0.96560 0.97574 1.20961 0.98962 0.91866 0.98900 0.91959 0.93633 0.91846 0.92027 0.89872 0.87878 0.92435 0.88708 0.95368 0.90916 0.73286 0.81106 0.85132 0.91743 0.86904 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.20 5.88 30.59 0.18 -1.02 16 3 C -0.11 -1.51 4.89 30.60 0.15 -1.36 16 4 C 0.08 1.46 2.51 29.85 0.07 1.53 16 5 H 0.12 1.20 7.89 -2.39 -0.02 1.19 16 6 O -0.38 -8.32 9.38 -129.99 -1.22 -9.54 16 7 C 0.02 0.43 10.70 113.37 1.21 1.64 16 8 C 0.48 12.48 6.72 87.66 0.59 13.06 16 9 O -0.56 -20.98 13.51 15.93 0.22 -20.76 16 10 N -0.64 -14.72 5.25 -303.37 -1.59 -16.31 16 11 C 0.07 2.15 6.40 38.17 0.24 2.39 16 12 C -0.08 -2.46 9.94 22.38 0.22 -2.24 16 13 C -0.18 -7.24 9.98 22.37 0.22 -7.02 16 14 C 0.10 5.29 6.65 22.59 0.15 5.44 16 15 O -0.23 -13.87 9.75 -22.93 -0.22 -14.09 16 16 C -0.41 -24.86 9.44 67.91 0.64 -24.22 16 17 H 0.09 5.34 5.29 -2.91 -0.02 5.32 16 18 C -0.02 -1.14 5.49 84.82 0.47 -0.68 16 19 N -0.92 -56.86 13.67 21.61 0.30 -56.57 16 20 Si 1.02 44.30 29.55 68.60 2.03 46.32 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 C -0.23 -10.94 9.13 22.37 0.20 -10.73 16 25 C -0.09 -3.59 8.69 22.38 0.19 -3.40 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 0.79 7.69 -2.39 -0.02 0.77 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.97 7.93 -2.39 -0.02 0.95 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.03 0.59 7.79 -2.39 -0.02 0.57 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.43 5.45 8.67 -92.71 -0.80 4.65 16 37 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.11 5.66 5.70 -2.91 -0.02 5.65 16 41 H 0.12 5.27 5.91 -2.91 -0.02 5.25 16 Total: -1.00 -81.07 347.07 5.01 -76.06 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.24 Total: 22.33 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 5.27 Total: -27.44 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.30 Total: -72.88 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.23 Total: -44.40 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -81.07 5.01 -76.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117778501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.178 kcal (2) G-P(sol) polarization free energy of solvation -81.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds