Wall clock time and date at job start Tue Mar 31 2020 07:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 C 1.52997 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46624 * 54.99747 * 4 3 2 6 6 O 1.42903 * 109.46951 * 295.00310 * 4 3 2 7 7 C 1.42903 * 114.00020 * 149.99710 * 6 4 3 8 8 C 1.50698 * 109.47424 * 174.99758 * 4 3 2 9 9 O 1.21296 * 119.99664 * 114.99916 * 8 4 3 10 10 N 1.34774 * 120.00333 * 295.00566 * 8 4 3 11 11 C 1.39988 * 120.00024 * 175.48968 * 10 8 4 12 12 C 1.38926 * 119.99642 * 215.12301 * 11 10 8 13 13 C 1.38001 * 119.99484 * 180.02562 * 12 11 10 14 14 C 1.38904 * 120.00417 * 0.02562 * 13 12 11 15 15 O 1.35781 * 120.00099 * 179.97438 * 14 13 12 16 16 C 1.34821 * 116.99817 * 5.35570 * 15 14 13 17 17 H 1.08002 * 119.99841 * 354.95829 * 16 15 14 18 18 C 1.38624 * 120.00095 * 174.96166 * 16 15 14 19 19 N 1.31571 * 120.00330 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47012 * 90.00007 * 20 18 16 22 22 H 1.48503 * 109.47488 * 209.99607 * 20 18 16 23 23 H 1.48500 * 109.47340 * 330.00150 * 20 18 16 24 24 C 1.38907 * 120.00168 * 0.25864 * 14 13 12 25 25 C 1.38001 * 120.00203 * 359.44626 * 24 14 13 26 26 H 1.08996 * 109.47424 * 60.00135 * 1 2 3 27 27 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47006 * 300.00136 * 1 2 3 29 29 H 1.08991 * 109.47135 * 240.00366 * 2 1 3 30 30 H 1.08996 * 109.46961 * 119.99601 * 2 1 3 31 31 H 1.09005 * 109.47382 * 60.00094 * 3 2 1 32 32 H 1.09003 * 109.47271 * 300.00186 * 3 2 1 33 33 H 1.09000 * 109.47052 * 300.00306 * 7 6 4 34 34 H 1.09005 * 109.47303 * 59.99809 * 7 6 4 35 35 H 1.08989 * 109.47251 * 179.97438 * 7 6 4 36 36 H 0.97001 * 119.99804 * 355.47816 * 10 8 4 37 37 H 1.07995 * 120.00073 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.99664 * 180.02562 * 13 12 11 39 39 H 0.96995 * 120.00718 * 180.02562 * 19 18 16 40 40 H 1.08006 * 119.99736 * 179.70056 * 24 14 13 41 41 H 1.07998 * 119.99907 * 180.27096 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 8 4.0458 0.8734 1.2220 7 6 5.3055 0.2095 1.1018 8 6 4.0723 2.8580 -0.1232 9 8 4.6926 3.3633 0.7884 10 7 3.8323 3.5624 -1.2469 11 6 4.2157 4.9065 -1.3258 12 6 3.4316 5.8122 -2.0292 13 6 3.8098 7.1371 -2.1074 14 6 4.9747 7.5649 -1.4833 15 8 5.3470 8.8683 -1.5607 16 6 4.4880 9.7156 -2.1622 17 1 3.5909 9.3348 -2.6276 18 6 4.7562 11.0755 -2.1833 19 7 5.8488 11.5395 -1.6159 20 14 3.5662 12.2493 -3.0174 21 1 2.5583 12.7157 -2.0315 22 1 4.3139 13.4163 -3.5505 23 1 2.8803 11.5491 -4.1330 24 6 5.7617 6.6581 -0.7849 25 6 5.3805 5.3344 -0.7015 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.2208 -0.6028 0.3799 34 1 6.0597 0.9197 0.7627 35 1 5.5973 -0.1944 2.0712 36 1 3.3940 3.1380 -2.0010 37 1 2.5266 5.4794 -2.5155 38 1 3.2001 7.8414 -2.6539 39 1 6.0363 12.4910 -1.6304 40 1 6.6700 6.9898 -0.3037 41 1 5.9902 4.6303 -0.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117778502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:03 Heat of formation + Delta-G solvation = -88.928653 kcal Electronic energy + Delta-G solvation = -22887.328098 eV Core-core repulsion = 19347.171329 eV Total energy + Delta-G solvation = -3540.156769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43102 -38.92839 -37.78477 -36.29334 -35.13845 -33.89331 -32.20092 -30.40081 -30.22205 -27.83745 -26.56235 -25.46256 -24.60850 -22.29263 -21.59597 -21.36746 -20.16033 -18.12440 -17.71831 -17.28891 -16.92093 -16.17478 -15.65360 -15.04699 -14.92899 -14.59856 -14.56997 -14.19622 -13.72582 -13.59332 -13.55549 -13.38405 -12.83310 -12.67098 -12.52521 -12.32373 -11.85586 -11.73026 -11.58183 -11.51228 -11.39689 -11.26377 -11.02273 -10.91220 -10.77457 -10.57302 -10.42154 -9.66152 -9.35835 -9.13412 -8.70918 -8.21214 -6.94476 -6.44563 -4.02865 2.07214 2.20042 2.74632 3.10783 3.12953 3.16808 3.18239 3.59624 3.96769 4.40857 4.56053 4.58482 4.67856 4.78696 4.92706 5.09185 5.10300 5.19253 5.31044 5.32503 5.33046 5.49666 5.52323 5.54560 5.58661 5.77988 5.80414 5.90610 6.02322 6.13249 6.21214 6.26651 6.75415 6.80471 6.85160 6.99904 7.15311 7.21840 7.40657 7.69276 7.77903 7.99768 8.34729 9.00665 9.71004 10.73433 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.002929 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.998224 B = 9557.777067 C =10361.313703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.077 3.923 5 H 0.085 0.915 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.480 3.520 9 O -0.511 6.511 10 N -0.659 5.659 11 C 0.033 3.967 12 C -0.089 4.089 13 C -0.220 4.220 14 C 0.148 3.852 15 O -0.176 6.176 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.179 4.179 25 C -0.067 4.067 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.401 0.599 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.270 0.730 40 H 0.121 0.879 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 -22.243 -0.863 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.151 4.151 4 C 0.015 3.985 5 H 0.102 0.898 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.266 3.734 9 O -0.385 6.385 10 N -0.305 5.305 11 C -0.059 4.059 12 C -0.109 4.109 13 C -0.240 4.240 14 C 0.094 3.906 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.199 4.199 25 C -0.087 4.087 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.235 0.765 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.867 -21.547 0.124 22.615 hybrid contribution -0.669 0.414 -1.065 1.324 sum -7.536 -21.133 -0.940 22.456 Atomic orbital electron populations 1.21773 0.95541 1.01686 1.02054 1.21484 0.96013 0.95792 1.02536 1.21703 0.90847 0.98621 1.03938 1.22075 0.96155 0.90966 0.89264 0.89754 1.87995 1.36677 1.72189 1.30354 1.22863 0.85581 0.95654 1.02679 1.21429 0.80824 0.88923 0.82269 1.90719 1.38624 1.70314 1.38834 1.43267 1.60484 1.10501 1.16288 1.17269 0.97324 0.82885 1.08437 1.20482 0.97712 0.92497 1.00231 1.20973 1.00137 0.95584 1.07302 1.19414 0.92325 0.86135 0.92758 1.83995 1.42983 1.12546 1.68442 1.21315 1.03781 0.87186 1.34539 0.89069 1.25290 0.97431 0.96538 0.97292 1.70043 1.23969 1.14638 1.41032 0.85711 0.79194 0.79390 0.79115 1.19876 1.20266 1.19208 1.20154 1.02280 0.92105 1.05375 1.20721 0.94447 0.95269 0.98288 0.92664 0.92676 0.92532 0.92082 0.91030 0.90160 0.90012 0.94052 0.93548 0.89248 0.76512 0.87151 0.85089 0.91997 0.86137 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.84 5.83 -26.73 -0.16 -1.00 16 3 C -0.11 -0.98 4.89 -26.73 -0.13 -1.11 16 4 C 0.08 0.80 2.52 -27.89 -0.07 0.73 16 5 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 6 O -0.36 -4.27 9.42 -55.09 -0.52 -4.79 16 7 C 0.03 0.27 10.81 101.05 1.09 1.36 16 8 C 0.48 6.93 6.98 -10.99 -0.08 6.85 16 9 O -0.51 -9.74 13.95 -14.32 -0.20 -9.94 16 10 N -0.66 -8.91 5.22 -9.82 -0.05 -8.96 16 11 C 0.03 0.59 6.30 -83.63 -0.53 0.06 16 12 C -0.09 -1.60 9.96 -39.41 -0.39 -1.99 16 13 C -0.22 -4.73 9.16 -39.42 -0.36 -5.09 16 14 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 15 O -0.18 -5.08 9.76 -0.02 0.00 -5.08 16 16 C -0.39 -10.95 9.48 30.87 0.29 -10.66 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.42 13.67 55.48 0.76 -24.67 16 20 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 25 C -0.07 -1.35 8.69 -39.42 -0.34 -1.70 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.56 7.82 -51.93 -0.41 0.15 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 33 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 3.80 8.68 -40.82 -0.35 3.44 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 41 H 0.13 2.52 6.23 -52.49 -0.33 2.19 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -34.01 348.30 -6.67 -40.68 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.83 Total: 5.28 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.05 Total: -13.22 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.71 Total: -33.63 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.72 Total: -19.80 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.01 -6.67 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117778502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.251 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds