Wall clock time and date at job start Tue Mar 31 2020 07:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 C 1.52997 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46624 * 54.99747 * 4 3 2 6 6 O 1.42903 * 109.46951 * 295.00310 * 4 3 2 7 7 C 1.42903 * 114.00020 * 149.99710 * 6 4 3 8 8 C 1.50698 * 109.47424 * 174.99758 * 4 3 2 9 9 O 1.21296 * 119.99664 * 114.99916 * 8 4 3 10 10 N 1.34774 * 120.00333 * 295.00566 * 8 4 3 11 11 C 1.39988 * 120.00024 * 175.48968 * 10 8 4 12 12 C 1.38926 * 119.99642 * 215.12301 * 11 10 8 13 13 C 1.38001 * 119.99484 * 180.02562 * 12 11 10 14 14 C 1.38904 * 120.00417 * 0.02562 * 13 12 11 15 15 O 1.35781 * 120.00099 * 179.97438 * 14 13 12 16 16 C 1.34821 * 116.99817 * 5.35570 * 15 14 13 17 17 H 1.08002 * 119.99841 * 354.95829 * 16 15 14 18 18 C 1.38624 * 120.00095 * 174.96166 * 16 15 14 19 19 N 1.31571 * 120.00330 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47012 * 90.00007 * 20 18 16 22 22 H 1.48503 * 109.47488 * 209.99607 * 20 18 16 23 23 H 1.48500 * 109.47340 * 330.00150 * 20 18 16 24 24 C 1.38907 * 120.00168 * 0.25864 * 14 13 12 25 25 C 1.38001 * 120.00203 * 359.44626 * 24 14 13 26 26 H 1.08996 * 109.47424 * 60.00135 * 1 2 3 27 27 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47006 * 300.00136 * 1 2 3 29 29 H 1.08991 * 109.47135 * 240.00366 * 2 1 3 30 30 H 1.08996 * 109.46961 * 119.99601 * 2 1 3 31 31 H 1.09005 * 109.47382 * 60.00094 * 3 2 1 32 32 H 1.09003 * 109.47271 * 300.00186 * 3 2 1 33 33 H 1.09000 * 109.47052 * 300.00306 * 7 6 4 34 34 H 1.09005 * 109.47303 * 59.99809 * 7 6 4 35 35 H 1.08989 * 109.47251 * 179.97438 * 7 6 4 36 36 H 0.97001 * 119.99804 * 355.47816 * 10 8 4 37 37 H 1.07995 * 120.00073 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.99664 * 180.02562 * 13 12 11 39 39 H 0.96995 * 120.00718 * 180.02562 * 19 18 16 40 40 H 1.08006 * 119.99736 * 179.70056 * 24 14 13 41 41 H 1.07998 * 119.99907 * 180.27096 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 8 4.0458 0.8734 1.2220 7 6 5.3055 0.2095 1.1018 8 6 4.0723 2.8580 -0.1232 9 8 4.6926 3.3633 0.7884 10 7 3.8323 3.5624 -1.2469 11 6 4.2157 4.9065 -1.3258 12 6 3.4316 5.8122 -2.0292 13 6 3.8098 7.1371 -2.1074 14 6 4.9747 7.5649 -1.4833 15 8 5.3470 8.8683 -1.5607 16 6 4.4880 9.7156 -2.1622 17 1 3.5909 9.3348 -2.6276 18 6 4.7562 11.0755 -2.1833 19 7 5.8488 11.5395 -1.6159 20 14 3.5662 12.2493 -3.0174 21 1 2.5583 12.7157 -2.0315 22 1 4.3139 13.4163 -3.5505 23 1 2.8803 11.5491 -4.1330 24 6 5.7617 6.6581 -0.7849 25 6 5.3805 5.3344 -0.7015 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.2208 -0.6028 0.3799 34 1 6.0597 0.9197 0.7627 35 1 5.5973 -0.1944 2.0712 36 1 3.3940 3.1380 -2.0010 37 1 2.5266 5.4794 -2.5155 38 1 3.2001 7.8414 -2.6539 39 1 6.0363 12.4910 -1.6304 40 1 6.6700 6.9898 -0.3037 41 1 5.9902 4.6303 -0.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117778502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:02 Heat of formation + Delta-G solvation = -111.622764 kcal Electronic energy + Delta-G solvation = -22888.312189 eV Core-core repulsion = 19347.171329 eV Total energy + Delta-G solvation = -3541.140860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68826 -40.54404 -38.98121 -37.83384 -35.91298 -35.20316 -34.15937 -31.89204 -31.28130 -29.28954 -27.42509 -27.21526 -25.58740 -23.93686 -22.97148 -22.08841 -21.46414 -19.91028 -19.07193 -18.73209 -18.16245 -17.38206 -16.64529 -16.36893 -16.24570 -15.86407 -15.64226 -15.58115 -15.46789 -15.11591 -14.60723 -14.40159 -14.26661 -14.07643 -13.61635 -13.37125 -13.23528 -13.16951 -12.99567 -12.68952 -12.49573 -12.34205 -12.11618 -11.97912 -11.94952 -11.55541 -11.45317 -11.36806 -11.04219 -10.56127 -10.30609 -9.85857 -8.64042 -8.45765 -6.13618 0.49184 0.52376 1.36873 1.44331 1.54798 1.55395 2.00925 2.19274 2.79005 2.81500 3.14469 3.50819 3.57046 3.84556 3.90825 4.05662 4.11672 4.24103 4.30991 4.46457 4.47700 4.53095 4.60760 4.70327 4.73530 4.77733 4.84849 4.95696 5.04193 5.06288 5.17473 5.28495 5.29309 5.38727 5.44816 5.52171 5.54297 5.66337 5.99854 6.02525 6.16292 6.53412 6.98257 7.20045 7.78827 8.77636 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.002929 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.998224 B = 9557.777067 C =10361.313703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.084 3.916 5 H 0.124 0.876 6 O -0.379 6.379 7 C 0.023 3.977 8 C 0.478 3.522 9 O -0.561 6.561 10 N -0.644 5.644 11 C 0.060 3.940 12 C -0.076 4.076 13 C -0.220 4.220 14 C 0.109 3.891 15 O -0.232 6.232 16 C -0.413 4.413 17 H 0.108 0.892 18 C -0.026 4.026 19 N -0.924 5.924 20 Si 1.021 2.979 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.247 1.247 24 C -0.193 4.193 25 C -0.075 4.075 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.096 0.904 36 H 0.427 0.573 37 H 0.163 0.837 38 H 0.134 0.866 39 H 0.272 0.728 40 H 0.109 0.891 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 -25.290 -2.791 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.149 4.149 4 C 0.023 3.977 5 H 0.142 0.858 6 O -0.296 6.296 7 C -0.072 4.072 8 C 0.266 3.734 9 O -0.439 6.439 10 N -0.293 5.293 11 C -0.034 4.034 12 C -0.096 4.096 13 C -0.240 4.240 14 C 0.058 3.942 15 O -0.138 6.138 16 C -0.489 4.489 17 H 0.125 0.875 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.840 3.160 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.171 1.171 24 C -0.213 4.213 25 C -0.095 4.095 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.115 0.885 36 H 0.266 0.734 37 H 0.180 0.820 38 H 0.152 0.848 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.817 -24.698 -1.829 26.640 hybrid contribution 0.235 0.960 -0.365 1.053 sum -9.582 -23.738 -2.194 25.693 Atomic orbital electron populations 1.21780 0.95183 1.02211 1.01957 1.21445 0.96247 0.94561 1.03024 1.21762 0.89347 0.99875 1.03893 1.22261 0.97109 0.88178 0.90194 0.85809 1.87985 1.37632 1.72337 1.31695 1.23023 0.84188 0.95903 1.04135 1.22401 0.79345 0.90363 0.81295 1.90712 1.40843 1.71660 1.40661 1.43195 1.60096 1.08585 1.17400 1.17410 0.95539 0.85078 1.05346 1.20874 0.98868 0.90640 0.99207 1.21152 0.98893 0.97401 1.06554 1.19861 0.94366 0.85301 0.94676 1.83964 1.44683 1.14359 1.70841 1.21892 1.04370 0.87834 1.34794 0.87491 1.26653 0.99436 0.98253 0.97952 1.70205 1.26814 1.15124 1.44040 0.84551 0.76530 0.76516 0.78390 1.19005 1.19834 1.17062 1.20257 1.02179 0.93136 1.05698 1.20820 0.95697 0.94180 0.98813 0.91847 0.91898 0.93576 0.89997 0.92139 0.92483 0.87823 0.90931 0.95248 0.88524 0.73402 0.81987 0.84844 0.91886 0.87247 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.18 5.83 30.60 0.18 -1.00 16 3 C -0.11 -1.51 4.89 30.59 0.15 -1.36 16 4 C 0.08 1.45 2.52 29.85 0.08 1.52 16 5 H 0.12 1.20 7.79 -2.39 -0.02 1.19 16 6 O -0.38 -8.29 9.42 -129.99 -1.22 -9.52 16 7 C 0.02 0.38 10.81 113.37 1.23 1.61 16 8 C 0.48 12.52 6.98 87.66 0.61 13.13 16 9 O -0.56 -20.95 13.95 15.91 0.22 -20.73 16 10 N -0.64 -14.86 5.22 -303.38 -1.58 -16.45 16 11 C 0.06 1.98 6.30 38.17 0.24 2.22 16 12 C -0.08 -2.46 9.96 22.38 0.22 -2.24 16 13 C -0.22 -9.29 9.16 22.37 0.20 -9.09 16 14 C 0.11 5.53 6.65 22.59 0.15 5.68 16 15 O -0.23 -14.16 9.76 -22.99 -0.22 -14.39 16 16 C -0.41 -23.94 9.48 67.91 0.64 -23.30 16 17 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 18 C -0.03 -1.47 5.49 84.82 0.47 -1.00 16 19 N -0.92 -57.40 13.67 21.61 0.30 -57.10 16 20 Si 1.02 42.53 29.55 68.60 2.03 44.56 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 24 C -0.19 -9.02 9.98 22.37 0.22 -8.80 16 25 C -0.08 -3.01 8.69 22.38 0.19 -2.81 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.77 7.82 -2.39 -0.02 0.76 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.10 0.94 7.91 -2.39 -0.02 0.92 16 33 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 34 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.43 5.65 8.68 -92.71 -0.80 4.85 16 37 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.13 5.52 5.63 -2.91 -0.02 5.50 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.11 5.18 8.06 -2.91 -0.02 5.15 16 41 H 0.13 5.13 6.23 -2.91 -0.02 5.11 16 Total: -1.00 -80.69 348.30 5.05 -75.65 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.24 Total: 24.20 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 5.30 Total: -26.21 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.29 Total: -73.55 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.23 Total: -44.64 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -80.69 5.05 -75.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117778502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.977 kcal (2) G-P(sol) polarization free energy of solvation -80.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds