Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.46847 * 300.00241 * 3 2 1 6 6 H 1.48499 * 109.46568 * 59.99848 * 3 2 1 7 7 C 1.37882 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46652 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46901 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47276 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47277 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99701 * 359.97438 * 13 12 11 15 15 O 1.34228 * 119.99785 * 180.02562 * 13 12 11 16 16 C 1.45203 * 116.99498 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.46921 * 179.97438 * 16 15 13 18 18 C 1.35449 * 126.77663 * 89.98074 * 17 16 15 19 19 C 1.41387 * 103.98917 * 180.02562 * 18 17 16 20 20 C 1.50694 * 126.80435 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.49958 * 343.74850 * 20 19 18 22 22 C 1.52995 * 117.50195 * 275.08673 * 20 19 18 23 23 N 1.30173 * 106.39214 * 0.02562 * 19 18 17 24 24 O 1.20923 * 111.60616 * 359.97438 * 23 19 18 25 25 H 0.96997 * 120.00337 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47342 * 59.99587 * 9 7 2 27 27 H 1.09002 * 109.46832 * 299.99142 * 9 7 2 28 28 H 1.08993 * 109.47659 * 59.99690 * 10 9 7 29 29 H 1.09003 * 109.47248 * 299.99158 * 10 9 7 30 30 H 1.09005 * 109.47219 * 59.99826 * 11 10 9 31 31 H 1.08994 * 109.47255 * 299.99490 * 11 10 9 32 32 H 1.09005 * 109.46821 * 59.99972 * 12 11 10 33 33 H 1.08994 * 109.47401 * 300.00151 * 12 11 10 34 34 H 1.08998 * 109.47223 * 59.99949 * 16 15 13 35 35 H 1.08996 * 109.46859 * 299.99747 * 16 15 13 36 36 H 1.08004 * 128.00729 * 0.07331 * 18 17 16 37 37 H 1.09005 * 115.55017 * 129.41236 * 20 19 18 38 38 H 1.08998 * 117.49821 * 359.97438 * 21 20 19 39 39 H 1.09000 * 117.50048 * 145.02131 * 21 20 19 40 40 H 1.08998 * 117.50084 * 214.97900 * 22 20 19 41 41 H 1.09006 * 117.49384 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4746 -6.1500 -0.0024 13 6 1.7211 -7.4552 -0.0023 14 8 0.5129 -7.4551 -0.0015 15 8 2.3923 -8.6176 -0.0021 16 6 1.6014 -9.8353 -0.0026 17 6 2.5194 -11.0304 -0.0029 18 6 3.0136 -11.6737 1.0819 19 6 3.8080 -12.7070 0.5340 20 6 4.6005 -13.7372 1.2965 21 6 4.8714 -13.4660 2.7777 22 6 6.0065 -13.3480 1.7575 23 7 3.7202 -12.5913 -0.7596 24 8 3.0089 -11.6662 -1.0766 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8713 -3.6047 0.8889 29 1 2.8726 -3.6039 -0.8910 30 1 0.8540 -5.0447 -0.8923 31 1 0.8534 -5.0450 0.8877 32 1 3.1012 -6.0926 0.8877 33 1 3.1013 -6.0920 -0.8922 34 1 0.9730 -9.8601 -0.8928 35 1 0.9722 -9.8602 0.8871 36 1 2.8402 -11.4497 2.1241 37 1 4.4379 -14.7724 0.9960 38 1 4.4768 -12.5421 3.2005 39 1 4.8875 -14.3226 3.4515 40 1 6.7688 -14.1270 1.7606 41 1 6.3584 -12.3467 1.5089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118463785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = -21.454089 kcal Electronic energy + Delta-G solvation = -21688.895812 eV Core-core repulsion = 18151.664959 eV Total energy + Delta-G solvation = -3537.230853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.37145 -40.61287 -38.05622 -37.01004 -35.03051 -33.85942 -32.99459 -32.65586 -30.04628 -27.78037 -25.71993 -25.10492 -23.32978 -22.80917 -22.48066 -20.71599 -20.31075 -20.06704 -18.14236 -17.91427 -17.46534 -16.86312 -16.51539 -16.19135 -15.88632 -15.07451 -14.94637 -14.52938 -14.40364 -13.94880 -13.36519 -12.99635 -12.67751 -12.51385 -12.34864 -12.10071 -12.01912 -11.77428 -11.69275 -11.60562 -11.09040 -11.03980 -10.86899 -10.68273 -10.63124 -10.50890 -10.47988 -10.21439 -9.90186 -9.67904 -9.31136 -9.02783 -8.33524 -5.98090 -4.00609 0.80933 1.67926 2.14642 2.35252 2.89826 3.14092 3.31888 3.39324 3.43228 3.57663 3.97099 4.28267 4.38720 4.47033 4.49245 4.56314 4.63805 4.73948 4.85953 5.03204 5.08565 5.18184 5.20006 5.22397 5.30920 5.37620 5.49505 5.55697 5.56931 5.65395 6.01527 6.11841 6.21290 6.43002 6.73250 6.91196 7.13577 7.64696 7.70667 7.81769 7.84808 8.02583 8.44357 9.07156 9.63396 11.13217 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032630 B = 0.001956 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.897030 B =14311.397502 C =14757.914858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.111 4.111 13 C 0.464 3.536 14 O -0.500 6.500 15 O -0.357 6.357 16 C 0.147 3.853 17 C -0.034 4.034 18 C -0.197 4.197 19 C 0.045 3.955 20 C -0.090 4.090 21 C -0.162 4.162 22 C -0.162 4.162 23 N -0.350 5.350 24 O 0.113 5.887 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.176 0.824 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -28.598 4.215 30.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.308 3.692 14 O -0.386 6.386 15 O -0.275 6.275 16 C 0.072 3.928 17 C -0.097 4.097 18 C -0.219 4.219 19 C -0.113 4.113 20 C -0.109 4.109 21 C -0.200 4.200 22 C -0.200 4.200 23 N -0.051 5.051 24 O 0.043 5.957 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.193 0.807 37 H 0.142 0.858 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.287 -29.195 3.176 30.515 hybrid contribution 0.050 1.091 0.716 1.306 sum 8.337 -28.104 3.892 29.572 Atomic orbital electron populations 1.69975 1.06051 1.26451 1.50952 1.25045 0.94851 0.99282 0.95421 0.86548 0.80096 0.83869 0.77554 1.19754 1.21041 1.21057 1.21311 0.93059 0.91121 1.50385 0.92628 1.19106 0.94037 0.91244 0.97394 1.21654 0.99167 0.93498 1.00471 1.21599 0.97073 0.92633 1.03339 1.21654 1.00007 0.87410 1.05739 1.24302 0.87678 0.85386 0.71860 1.90697 1.15531 1.87579 1.44831 1.86599 1.41740 1.14366 1.84801 1.21004 0.89133 0.77103 1.05529 1.23852 1.01439 0.97948 0.86478 1.22457 1.01016 0.97281 1.01119 1.22660 1.00434 0.98498 0.89692 1.20118 0.98027 0.96676 0.96035 1.23063 1.02251 1.04081 0.90562 1.23056 0.90808 1.03637 1.02502 1.73855 1.09814 1.05287 1.16180 1.84878 1.45984 1.31956 1.32879 0.93074 0.96502 0.96524 0.93173 0.93147 0.91428 0.91451 0.87702 0.87639 0.88478 0.87425 0.80691 0.85820 0.88094 0.87642 0.87758 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.11 -1.37 5.81 -27.88 -0.16 -1.53 16 13 C 0.46 6.01 7.96 36.01 0.29 6.29 16 14 O -0.50 -7.83 15.73 -18.75 -0.29 -8.13 16 15 O -0.36 -4.02 10.20 -39.25 -0.40 -4.42 16 16 C 0.15 1.32 6.03 36.00 0.22 1.54 16 17 C -0.03 -0.32 7.13 -35.31 -0.25 -0.57 16 18 C -0.20 -1.64 10.40 -39.38 -0.41 -2.05 16 19 C 0.05 0.43 6.95 -82.10 -0.57 -0.14 16 20 C -0.09 -0.62 6.33 -91.78 -0.58 -1.20 16 21 C -0.16 -0.79 10.05 -26.69 -0.27 -1.06 16 22 C -0.16 -0.94 10.24 -26.70 -0.27 -1.21 16 23 N -0.35 -4.05 12.07 33.42 0.40 -3.64 16 24 O 0.11 1.26 11.20 17.17 0.19 1.45 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.10 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.11 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.18 1.00 7.63 -52.48 -0.40 0.60 16 37 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.47 7.34 -51.93 -0.38 0.09 16 39 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -33.15 358.34 -8.04 -41.19 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -6.24 Total: -4.77 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.82 Total: -17.35 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 1.14 Total: -30.02 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.50 Total: -11.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.15 -8.04 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118463785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.736 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds