Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.46847 * 300.00241 * 3 2 1 6 6 H 1.48499 * 109.46568 * 59.99848 * 3 2 1 7 7 C 1.37882 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46652 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46901 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47276 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47277 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99701 * 359.97438 * 13 12 11 15 15 O 1.34228 * 119.99785 * 180.02562 * 13 12 11 16 16 C 1.45203 * 116.99498 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.46921 * 179.97438 * 16 15 13 18 18 C 1.35449 * 126.77663 * 89.98074 * 17 16 15 19 19 C 1.41387 * 103.98917 * 180.02562 * 18 17 16 20 20 C 1.50694 * 126.80435 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.49958 * 343.74850 * 20 19 18 22 22 C 1.52995 * 117.50195 * 275.08673 * 20 19 18 23 23 N 1.30173 * 106.39214 * 0.02562 * 19 18 17 24 24 O 1.20923 * 111.60616 * 359.97438 * 23 19 18 25 25 H 0.96997 * 120.00337 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47342 * 59.99587 * 9 7 2 27 27 H 1.09002 * 109.46832 * 299.99142 * 9 7 2 28 28 H 1.08993 * 109.47659 * 59.99690 * 10 9 7 29 29 H 1.09003 * 109.47248 * 299.99158 * 10 9 7 30 30 H 1.09005 * 109.47219 * 59.99826 * 11 10 9 31 31 H 1.08994 * 109.47255 * 299.99490 * 11 10 9 32 32 H 1.09005 * 109.46821 * 59.99972 * 12 11 10 33 33 H 1.08994 * 109.47401 * 300.00151 * 12 11 10 34 34 H 1.08998 * 109.47223 * 59.99949 * 16 15 13 35 35 H 1.08996 * 109.46859 * 299.99747 * 16 15 13 36 36 H 1.08004 * 128.00729 * 0.07331 * 18 17 16 37 37 H 1.09005 * 115.55017 * 129.41236 * 20 19 18 38 38 H 1.08998 * 117.49821 * 359.97438 * 21 20 19 39 39 H 1.09000 * 117.50048 * 145.02131 * 21 20 19 40 40 H 1.08998 * 117.50084 * 214.97900 * 22 20 19 41 41 H 1.09006 * 117.49384 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4746 -6.1500 -0.0024 13 6 1.7211 -7.4552 -0.0023 14 8 0.5129 -7.4551 -0.0015 15 8 2.3923 -8.6176 -0.0021 16 6 1.6014 -9.8353 -0.0026 17 6 2.5194 -11.0304 -0.0029 18 6 3.0136 -11.6737 1.0819 19 6 3.8080 -12.7070 0.5340 20 6 4.6005 -13.7372 1.2965 21 6 4.8714 -13.4660 2.7777 22 6 6.0065 -13.3480 1.7575 23 7 3.7202 -12.5913 -0.7596 24 8 3.0089 -11.6662 -1.0766 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8713 -3.6047 0.8889 29 1 2.8726 -3.6039 -0.8910 30 1 0.8540 -5.0447 -0.8923 31 1 0.8534 -5.0450 0.8877 32 1 3.1012 -6.0926 0.8877 33 1 3.1013 -6.0920 -0.8922 34 1 0.9730 -9.8601 -0.8928 35 1 0.9722 -9.8602 0.8871 36 1 2.8402 -11.4497 2.1241 37 1 4.4379 -14.7724 0.9960 38 1 4.4768 -12.5421 3.2005 39 1 4.8875 -14.3226 3.4515 40 1 6.7688 -14.1270 1.7606 41 1 6.3584 -12.3467 1.5089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118463785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = -38.928674 kcal Electronic energy + Delta-G solvation = -21689.653567 eV Core-core repulsion = 18151.664959 eV Total energy + Delta-G solvation = -3537.988608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.10448 -41.60980 -38.53497 -38.01730 -36.61633 -34.67441 -34.51114 -33.69027 -31.66635 -28.76590 -27.32853 -25.71577 -24.52610 -23.80337 -22.99432 -22.09588 -21.46811 -20.93553 -18.99903 -18.66991 -18.44809 -18.31515 -17.81397 -17.25113 -16.63474 -16.42354 -16.21486 -15.54088 -15.14059 -14.97318 -14.57549 -14.36444 -13.91392 -13.64671 -13.54703 -13.28191 -13.04593 -12.85837 -12.76513 -12.42986 -12.32477 -12.20237 -12.17479 -12.16622 -11.84847 -11.71131 -11.38745 -11.35653 -11.28747 -11.06299 -10.81031 -10.62279 -10.53772 -8.17600 -6.28852 0.06642 1.00111 1.14567 1.41943 1.42166 1.55560 1.57805 2.10293 2.43101 2.66187 3.01403 3.15576 3.32818 3.72332 3.79217 3.86564 3.90006 4.00078 4.03965 4.11945 4.15439 4.18220 4.38802 4.54503 4.57170 4.66342 4.73863 4.81830 4.87173 4.88479 4.99711 5.07315 5.17781 5.18989 5.20323 5.34625 5.40510 5.59061 5.80705 5.90680 6.27499 6.66617 6.90055 7.09779 7.40652 8.94563 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032630 B = 0.001956 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.897030 B =14311.397502 C =14757.914858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.017 3.983 10 C -0.097 4.097 11 C -0.101 4.101 12 C -0.103 4.103 13 C 0.473 3.527 14 O -0.534 6.534 15 O -0.356 6.356 16 C 0.146 3.854 17 C -0.041 4.041 18 C -0.190 4.190 19 C 0.043 3.957 20 C -0.110 4.110 21 C -0.145 4.145 22 C -0.165 4.165 23 N -0.381 5.381 24 O 0.092 5.908 25 H 0.262 0.738 26 H -0.013 1.013 27 H -0.012 1.012 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.203 0.797 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.313 -29.166 5.406 31.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.020 4.020 10 C -0.135 4.135 11 C -0.138 4.138 12 C -0.140 4.140 13 C 0.318 3.682 14 O -0.422 6.422 15 O -0.273 6.273 16 C 0.071 3.929 17 C -0.105 4.105 18 C -0.211 4.211 19 C -0.115 4.115 20 C -0.129 4.129 21 C -0.182 4.182 22 C -0.203 4.203 23 N -0.086 5.086 24 O 0.025 5.975 25 H 0.071 0.929 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.220 0.780 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.319 -29.773 4.360 31.811 hybrid contribution -0.591 1.193 0.361 1.379 sum 9.728 -28.580 4.720 30.557 Atomic orbital electron populations 1.70119 1.07939 1.27624 1.52007 1.26054 0.95780 1.03605 0.94926 0.85370 0.79215 0.78658 0.77619 1.18209 1.20603 1.20533 1.21796 0.93757 0.92296 1.49973 0.91658 1.19069 0.94712 0.93577 0.94616 1.21446 0.97912 0.92515 1.01613 1.21365 0.97424 0.93005 1.02046 1.21522 0.98933 0.85441 1.08114 1.24247 0.87061 0.85957 0.70937 1.90697 1.16929 1.88057 1.46562 1.86559 1.41829 1.14572 1.84308 1.21208 0.88963 0.75983 1.06701 1.24004 1.01764 0.98152 0.86543 1.22829 0.99831 0.96318 1.02096 1.23172 1.00108 0.98894 0.89305 1.20282 0.98775 0.96308 0.97541 1.23194 1.00475 1.04994 0.89512 1.23122 0.90829 1.03491 1.02848 1.73850 1.10986 1.06147 1.17610 1.84838 1.46542 1.32353 1.33732 0.92895 0.99439 0.99317 0.91815 0.92009 0.92984 0.92718 0.85078 0.85444 0.88164 0.85564 0.78018 0.85378 0.87578 0.85738 0.86379 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.29 21.45 0.28 -57.60 16 2 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.74 5.15 30.59 0.16 -3.58 16 11 C -0.10 -3.25 4.50 30.60 0.14 -3.12 16 12 C -0.10 -2.31 5.81 29.85 0.17 -2.14 16 13 C 0.47 11.50 7.96 71.24 0.57 12.07 16 14 O -0.53 -16.41 15.73 21.98 0.35 -16.07 16 15 O -0.36 -7.35 10.20 -51.40 -0.52 -7.88 16 16 C 0.15 2.43 6.03 71.23 0.43 2.86 16 17 C -0.04 -0.74 7.13 25.04 0.18 -0.56 16 18 C -0.19 -2.84 10.40 22.40 0.23 -2.61 16 19 C 0.04 0.78 6.95 43.58 0.30 1.08 16 20 C -0.11 -1.37 6.33 -11.54 -0.07 -1.44 16 21 C -0.14 -1.04 10.05 30.62 0.31 -0.74 16 22 C -0.17 -1.64 10.24 30.62 0.31 -1.33 16 23 N -0.38 -8.83 12.07 -49.55 -0.60 -9.43 16 24 O 0.09 2.07 11.20 71.61 0.80 2.87 16 25 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.83 8.10 -2.38 -0.02 1.81 16 31 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 32 H 0.13 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.10 1.62 8.13 -2.39 -0.02 1.60 16 35 H 0.13 1.65 8.13 -2.39 -0.02 1.63 16 36 H 0.20 1.73 7.63 -2.91 -0.02 1.70 16 37 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.11 0.66 7.34 -2.39 -0.02 0.65 16 39 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -73.09 358.34 6.92 -66.17 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.02 Total: 4.40 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.57 Total: -28.77 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.31 Total: -67.03 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.62 Total: -21.07 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.09 6.92 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118463785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.237 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds